Wall clock time and date at job start Tue Mar 31 2020 19:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30178 * 126.80593 * 2 1 4 4 O 1.20892 * 111.74066 * 180.27077 * 3 2 1 5 5 C 1.34289 * 111.63308 * 359.72281 * 4 3 2 6 6 C 1.50695 * 126.82444 * 180.02562 * 5 4 3 7 7 C 1.52999 * 117.50065 * 8.70495 * 6 5 4 8 8 C 1.53003 * 117.49817 * 300.04580 * 6 5 4 9 9 C 1.35862 * 106.35553 * 0.02562 * 5 4 3 10 10 N 1.40772 * 128.05523 * 179.97438 * 9 5 4 11 11 C 1.34779 * 119.99875 * 140.80220 * 10 9 5 12 12 O 1.21603 * 119.99710 * 2.32531 * 11 10 9 13 13 N 1.34775 * 120.00062 * 182.31975 * 11 10 9 14 14 C 1.47079 * 120.88052 * 354.67150 * 13 11 10 15 15 C 1.53244 * 108.51926 * 129.08485 * 14 13 11 16 16 N 1.46896 * 109.33977 * 53.83215 * 15 14 13 17 17 C 1.46899 * 111.00340 * 172.74540 * 16 15 14 18 18 C 1.50700 * 109.47031 * 294.30212 * 17 16 15 19 19 H 1.08004 * 120.00041 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00199 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99805 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00110 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46947 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46826 * 120.00281 * 22 20 18 25 25 H 1.48493 * 109.47252 * 240.00300 * 22 20 18 26 26 C 1.46898 * 111.26832 * 296.89558 * 16 15 14 27 27 C 1.47074 * 120.88006 * 174.95133 * 13 11 10 28 28 H 1.09003 * 109.47055 * 273.09232 * 1 2 3 29 29 H 1.08996 * 109.47350 * 33.09203 * 1 2 3 30 30 H 1.08999 * 109.47113 * 153.09982 * 1 2 3 31 31 H 1.09000 * 115.54959 * 154.37498 * 6 5 4 32 32 H 1.09003 * 117.49560 * 0.02562 * 7 6 5 33 33 H 1.08994 * 117.50022 * 145.01570 * 7 6 5 34 34 H 1.08998 * 117.49906 * 214.97898 * 8 6 5 35 35 H 1.08994 * 117.50135 * 359.97438 * 8 6 5 36 36 H 0.96998 * 120.00040 * 320.79625 * 10 9 5 37 37 H 1.08995 * 109.62936 * 248.79503 * 14 13 11 38 38 H 1.09004 * 109.62887 * 9.37786 * 14 13 11 39 39 H 1.08998 * 109.49726 * 293.87098 * 15 14 13 40 40 H 1.08996 * 109.49254 * 173.79191 * 15 14 13 41 41 H 1.09001 * 109.47122 * 54.30033 * 17 16 15 42 42 H 1.09004 * 109.47544 * 174.30176 * 17 16 15 43 43 H 0.97000 * 120.00034 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.49326 * 303.14478 * 26 16 15 45 45 H 1.09006 * 109.49507 * 183.06084 * 26 16 15 46 46 H 1.09003 * 109.63424 * 350.62432 * 27 13 11 47 47 H 1.09008 * 109.63112 * 111.20435 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4542 0.7281 -0.0053 5 6 3.6078 -0.6060 -0.0036 6 6 4.9095 -1.3653 -0.0083 7 6 6.1966 -0.5622 0.1898 8 6 5.8567 -1.1364 -1.1878 9 6 2.3565 -1.1352 0.0031 10 7 1.9891 -2.4941 0.0067 11 6 0.9435 -2.9075 0.7500 12 8 0.2915 -2.1003 1.3841 13 7 0.6205 -4.2153 0.7902 14 6 1.3204 -5.1922 -0.0578 15 6 1.7969 -6.3503 0.8254 16 7 0.6570 -6.8873 1.5804 17 6 1.0346 -8.1062 2.3080 18 6 1.3671 -9.1968 1.3226 19 1 1.3037 -9.0038 0.2618 20 6 1.7521 -10.4410 1.7751 21 7 1.8288 -10.6762 3.0667 22 14 2.1635 -11.7931 0.5535 23 1 1.9997 -11.2773 -0.8294 24 1 3.5681 -12.2314 0.7548 25 1 1.2505 -12.9451 0.7641 26 6 0.1007 -5.8801 2.4936 27 6 -0.4453 -4.7026 1.6789 28 1 -0.3633 0.0554 1.0262 29 1 -0.3634 0.8609 -0.5611 30 1 -0.3633 -0.9165 -0.4649 31 1 4.8708 -2.3673 0.4190 32 1 6.1018 0.5154 0.3239 33 1 7.0047 -1.0359 0.7471 34 1 6.4414 -1.9877 -1.5363 35 1 5.5382 -0.4370 -1.9607 36 1 2.4883 -3.1329 -0.5258 37 1 0.6392 -5.5695 -0.8204 38 1 2.1787 -4.7165 -0.5324 39 1 2.5558 -5.9899 1.5199 40 1 2.2203 -7.1352 0.1988 41 1 1.9051 -7.9022 2.9315 42 1 0.2039 -8.4260 2.9372 43 1 2.0993 -11.5516 3.3851 44 1 0.8832 -5.5261 3.1649 45 1 -0.7061 -6.3239 3.0769 46 1 -0.7545 -3.9034 2.3525 47 1 -1.2963 -5.0329 1.0832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602943855.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:38 Heat of formation + Delta-G solvation = 81.867652 kcal Electronic energy + Delta-G solvation = -29255.887618 eV Core-core repulsion = 25250.702594 eV Total energy + Delta-G solvation = -4005.185024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.06239 -40.53008 -37.99124 -37.67827 -35.69641 -34.64678 -33.60831 -32.46010 -31.18580 -30.47458 -28.64422 -28.24918 -25.67194 -24.06029 -23.56556 -23.22381 -22.75928 -21.94423 -20.86631 -20.22180 -19.29865 -18.29156 -17.83468 -17.61004 -16.60256 -16.42368 -15.94099 -15.52726 -15.31404 -14.79341 -14.52214 -14.29424 -14.14294 -13.91438 -13.69922 -13.38308 -13.33850 -13.17264 -12.65988 -12.39661 -12.35877 -12.01234 -11.95829 -11.65141 -11.60199 -11.37252 -11.16407 -11.08017 -10.93935 -10.85679 -10.73867 -10.62875 -10.58639 -10.06905 -9.93787 -9.68034 -9.34194 -8.78964 -8.54792 -8.39710 -7.41930 -6.12719 -4.15135 1.15638 2.00207 2.26314 2.89037 3.11788 3.23695 3.31887 3.35064 3.45243 3.65973 3.99633 4.19881 4.32613 4.39345 4.53846 4.59796 4.67172 4.99523 5.08654 5.15930 5.22746 5.25045 5.27451 5.32650 5.44833 5.45996 5.54290 5.60487 5.64020 5.66057 5.71008 5.72768 5.75523 5.94358 6.15728 6.19858 6.28650 6.34250 6.35013 6.48354 6.78494 7.14064 7.20211 7.65948 7.71741 7.93351 8.03887 8.12406 8.39046 8.41768 8.92236 9.49817 10.98067 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015083 B = 0.002749 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.888091 B =10181.437276 C =11483.978262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.040 3.960 3 N -0.361 5.361 4 O 0.103 5.897 5 C -0.031 4.031 6 C -0.084 4.084 7 C -0.163 4.163 8 C -0.163 4.163 9 C 0.068 3.932 10 N -0.657 5.657 11 C 0.708 3.292 12 O -0.575 6.575 13 N -0.618 5.618 14 C 0.113 3.887 15 C 0.051 3.949 16 N -0.534 5.534 17 C 0.193 3.807 18 C -0.510 4.510 19 H 0.064 0.936 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.039 3.961 27 C 0.137 3.863 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.135 0.865 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.410 0.590 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.025 0.975 40 H 0.098 0.902 41 H -0.009 1.009 42 H 0.032 0.968 43 H 0.262 0.738 44 H 0.027 0.973 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.775 18.481 -8.323 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.121 4.121 3 N -0.069 5.069 4 O 0.040 5.960 5 C -0.098 4.098 6 C -0.103 4.103 7 C -0.200 4.200 8 C -0.200 4.200 9 C -0.032 4.032 10 N -0.312 5.312 11 C 0.410 3.590 12 O -0.452 6.452 13 N -0.355 5.355 14 C -0.011 4.011 15 C -0.079 4.079 16 N -0.259 5.259 17 C 0.069 3.931 18 C -0.549 4.549 19 H 0.083 0.917 20 C -0.146 4.146 21 N -0.536 5.536 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.090 4.090 27 C 0.014 3.986 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.249 0.751 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.117 0.883 41 H 0.009 0.991 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.045 0.955 45 H 0.102 0.898 46 H 0.108 0.892 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.718 20.060 -8.033 21.926 hybrid contribution 1.095 -1.981 -0.140 2.268 sum 4.813 18.079 -8.173 20.416 Atomic orbital electron populations 1.20108 0.85108 1.02117 1.03933 1.23443 0.99310 0.87354 1.01983 1.73822 0.89065 1.23292 1.20683 1.84820 1.21460 1.20954 1.68749 1.22806 0.95281 0.84038 1.07637 1.20344 0.84662 0.99048 1.06222 1.23060 0.96731 1.00640 0.99566 1.23146 1.01228 1.03928 0.91692 1.17642 0.90984 0.85570 1.09008 1.41942 1.34050 1.05126 1.50053 1.15738 0.80368 0.82886 0.80001 1.90932 1.53706 1.52201 1.48377 1.47387 1.39337 1.04395 1.44345 1.21946 0.95925 0.89557 0.93640 1.22319 0.92578 0.95819 0.97156 1.62076 1.31036 1.05334 1.27497 1.19737 0.95093 0.85049 0.93257 1.21160 1.44961 0.95421 0.93358 0.91745 1.25001 0.95658 0.98679 0.95239 1.69963 1.48018 1.22825 1.12779 0.86445 0.77874 0.81809 0.81300 1.19624 1.21114 1.20967 1.22450 0.99600 0.92606 0.94359 1.21705 0.88451 0.96033 0.92383 0.89163 0.91830 0.90655 0.84757 0.87761 0.87544 0.87424 0.88152 0.75065 0.90158 0.91407 0.95675 0.88341 0.99093 0.94946 0.92867 0.95497 0.89832 0.89184 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 8.52 36.00 0.31 -0.39 16 2 C 0.04 0.55 6.98 -81.94 -0.57 -0.02 16 3 N -0.36 -5.05 12.06 33.56 0.40 -4.65 16 4 O 0.10 1.28 11.00 16.52 0.18 1.46 16 5 C -0.03 -0.34 6.97 -35.16 -0.24 -0.59 16 6 C -0.08 -0.67 6.27 -91.77 -0.58 -1.25 16 7 C -0.16 -1.07 10.19 -26.69 -0.27 -1.34 16 8 C -0.16 -1.00 10.24 -26.69 -0.27 -1.27 16 9 C 0.07 0.86 6.68 -83.24 -0.56 0.30 16 10 N -0.66 -7.75 5.39 -13.99 -0.08 -7.83 16 11 C 0.71 10.12 7.79 -86.92 -0.68 9.44 16 12 O -0.58 -9.62 11.95 5.28 0.06 -9.56 16 13 N -0.62 -8.55 3.01 -178.18 -0.54 -9.09 16 14 C 0.11 1.42 6.60 -3.60 -0.02 1.40 16 15 C 0.05 0.84 5.46 -3.70 -0.02 0.82 16 16 N -0.53 -10.40 4.62 -235.76 -1.09 -11.49 16 17 C 0.19 4.71 4.72 -4.98 -0.02 4.69 16 18 C -0.51 -13.38 8.41 -34.44 -0.29 -13.67 16 19 H 0.06 1.65 7.13 -52.48 -0.37 1.27 16 20 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 21 N -0.90 -25.64 13.29 55.43 0.74 -24.90 16 22 Si 0.90 20.55 29.54 -169.99 -5.02 15.52 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 27 C 0.14 1.97 6.58 -3.60 -0.02 1.95 16 28 H 0.09 1.23 7.38 -51.93 -0.38 0.85 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.97 7.11 -51.93 -0.37 0.60 16 31 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.10 0.71 8.02 -51.93 -0.42 0.29 16 33 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.41 3.79 6.31 -40.82 -0.26 3.53 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 0.64 5.62 -51.93 -0.29 0.34 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.10 1.74 6.67 -51.93 -0.35 1.39 16 41 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 42 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.08 1.37 7.99 -51.93 -0.41 0.95 16 46 H 0.09 1.29 7.10 -51.93 -0.37 0.92 16 47 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -31.34 379.67 -9.98 -41.31 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.00 Total: 1.36 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -3.36 Total: 2.13 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.56 Total: -57.95 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.24 Total: -8.10 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.34 -9.98 -41.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602943855.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.180 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds