Wall clock time and date at job start Tue Mar 31 2020 19:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30178 * 126.80593 * 2 1 4 4 O 1.20892 * 111.74066 * 180.27077 * 3 2 1 5 5 C 1.34289 * 111.63308 * 359.72281 * 4 3 2 6 6 C 1.50695 * 126.82444 * 180.02562 * 5 4 3 7 7 C 1.52999 * 117.50065 * 8.70495 * 6 5 4 8 8 C 1.53003 * 117.49817 * 300.04580 * 6 5 4 9 9 C 1.35862 * 106.35553 * 0.02562 * 5 4 3 10 10 N 1.40772 * 128.05523 * 179.97438 * 9 5 4 11 11 C 1.34779 * 119.99875 * 140.80220 * 10 9 5 12 12 O 1.21603 * 119.99710 * 2.32531 * 11 10 9 13 13 N 1.34775 * 120.00062 * 182.31975 * 11 10 9 14 14 C 1.47079 * 120.88052 * 354.67150 * 13 11 10 15 15 C 1.53244 * 108.51926 * 129.08485 * 14 13 11 16 16 N 1.46896 * 109.33977 * 53.83215 * 15 14 13 17 17 C 1.46899 * 111.00340 * 172.74540 * 16 15 14 18 18 C 1.50700 * 109.47031 * 294.30212 * 17 16 15 19 19 H 1.08004 * 120.00041 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00199 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99805 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00110 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46947 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46826 * 120.00281 * 22 20 18 25 25 H 1.48493 * 109.47252 * 240.00300 * 22 20 18 26 26 C 1.46898 * 111.26832 * 296.89558 * 16 15 14 27 27 C 1.47074 * 120.88006 * 174.95133 * 13 11 10 28 28 H 1.09003 * 109.47055 * 273.09232 * 1 2 3 29 29 H 1.08996 * 109.47350 * 33.09203 * 1 2 3 30 30 H 1.08999 * 109.47113 * 153.09982 * 1 2 3 31 31 H 1.09000 * 115.54959 * 154.37498 * 6 5 4 32 32 H 1.09003 * 117.49560 * 0.02562 * 7 6 5 33 33 H 1.08994 * 117.50022 * 145.01570 * 7 6 5 34 34 H 1.08998 * 117.49906 * 214.97898 * 8 6 5 35 35 H 1.08994 * 117.50135 * 359.97438 * 8 6 5 36 36 H 0.96998 * 120.00040 * 320.79625 * 10 9 5 37 37 H 1.08995 * 109.62936 * 248.79503 * 14 13 11 38 38 H 1.09004 * 109.62887 * 9.37786 * 14 13 11 39 39 H 1.08998 * 109.49726 * 293.87098 * 15 14 13 40 40 H 1.08996 * 109.49254 * 173.79191 * 15 14 13 41 41 H 1.09001 * 109.47122 * 54.30033 * 17 16 15 42 42 H 1.09004 * 109.47544 * 174.30176 * 17 16 15 43 43 H 0.97000 * 120.00034 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.49326 * 303.14478 * 26 16 15 45 45 H 1.09006 * 109.49507 * 183.06084 * 26 16 15 46 46 H 1.09003 * 109.63424 * 350.62432 * 27 13 11 47 47 H 1.09008 * 109.63112 * 111.20435 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4542 0.7281 -0.0053 5 6 3.6078 -0.6060 -0.0036 6 6 4.9095 -1.3653 -0.0083 7 6 6.1966 -0.5622 0.1898 8 6 5.8567 -1.1364 -1.1878 9 6 2.3565 -1.1352 0.0031 10 7 1.9891 -2.4941 0.0067 11 6 0.9435 -2.9075 0.7500 12 8 0.2915 -2.1003 1.3841 13 7 0.6205 -4.2153 0.7902 14 6 1.3204 -5.1922 -0.0578 15 6 1.7969 -6.3503 0.8254 16 7 0.6570 -6.8873 1.5804 17 6 1.0346 -8.1062 2.3080 18 6 1.3671 -9.1968 1.3226 19 1 1.3037 -9.0038 0.2618 20 6 1.7521 -10.4410 1.7751 21 7 1.8288 -10.6762 3.0667 22 14 2.1635 -11.7931 0.5535 23 1 1.9997 -11.2773 -0.8294 24 1 3.5681 -12.2314 0.7548 25 1 1.2505 -12.9451 0.7641 26 6 0.1007 -5.8801 2.4936 27 6 -0.4453 -4.7026 1.6789 28 1 -0.3633 0.0554 1.0262 29 1 -0.3634 0.8609 -0.5611 30 1 -0.3633 -0.9165 -0.4649 31 1 4.8708 -2.3673 0.4190 32 1 6.1018 0.5154 0.3239 33 1 7.0047 -1.0359 0.7471 34 1 6.4414 -1.9877 -1.5363 35 1 5.5382 -0.4370 -1.9607 36 1 2.4883 -3.1329 -0.5258 37 1 0.6392 -5.5695 -0.8204 38 1 2.1787 -4.7165 -0.5324 39 1 2.5558 -5.9899 1.5199 40 1 2.2203 -7.1352 0.1988 41 1 1.9051 -7.9022 2.9315 42 1 0.2039 -8.4260 2.9372 43 1 2.0993 -11.5516 3.3851 44 1 0.8832 -5.5261 3.1649 45 1 -0.7061 -6.3239 3.0769 46 1 -0.7545 -3.9034 2.3525 47 1 -1.2963 -5.0329 1.0832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602943855.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:37 Heat of formation + Delta-G solvation = 62.097297 kcal Electronic energy + Delta-G solvation = -29256.744925 eV Core-core repulsion = 25250.702594 eV Total energy + Delta-G solvation = -4006.042331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.04191 -41.66072 -39.30284 -38.30693 -36.75759 -36.05719 -34.80953 -34.20418 -32.33740 -31.55049 -29.91170 -29.62802 -27.29609 -24.93681 -24.65654 -24.53153 -23.51247 -23.21594 -22.16313 -21.18025 -20.41255 -19.34464 -18.80655 -18.64424 -18.45944 -17.41381 -16.90994 -16.77811 -16.48700 -16.21255 -15.99290 -15.51401 -15.34532 -15.15909 -14.94038 -14.61153 -14.26564 -14.20524 -14.04990 -13.76289 -13.46405 -13.17553 -13.04226 -12.76588 -12.60523 -12.57470 -12.46431 -12.40502 -12.31865 -12.30562 -12.11962 -11.77823 -11.65848 -11.38794 -11.25618 -11.16183 -10.64032 -10.61174 -9.90734 -9.42556 -9.03840 -8.18775 -6.28906 0.25792 0.97790 1.25357 1.44345 1.46084 1.58502 1.94490 2.06905 2.42384 2.64994 2.89936 3.14011 3.19704 3.23859 3.29183 3.66995 3.86253 3.92884 4.02972 4.03923 4.12192 4.18591 4.23982 4.38574 4.44453 4.51910 4.54397 4.65106 4.73296 4.75029 4.81114 4.85095 4.95355 4.98683 5.02446 5.10473 5.13260 5.19224 5.23818 5.25860 5.32896 5.40266 5.64507 5.73631 6.04374 6.27964 6.56578 6.69052 6.87792 7.17067 7.32888 7.41428 8.92731 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015083 B = 0.002749 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.888091 B =10181.437276 C =11483.978262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.023 3.977 3 N -0.381 5.381 4 O 0.101 5.899 5 C -0.012 4.012 6 C -0.103 4.103 7 C -0.160 4.160 8 C -0.146 4.146 9 C 0.044 3.956 10 N -0.642 5.642 11 C 0.707 3.293 12 O -0.601 6.601 13 N -0.619 5.619 14 C 0.123 3.877 15 C 0.050 3.950 16 N -0.537 5.537 17 C 0.208 3.792 18 C -0.518 4.518 19 H 0.072 0.928 20 C 0.000 4.000 21 N -0.937 5.937 22 Si 0.969 3.031 23 H -0.257 1.257 24 H -0.281 1.281 25 H -0.284 1.284 26 C 0.042 3.958 27 C 0.148 3.852 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.099 0.901 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.423 0.577 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.016 0.984 40 H 0.089 0.911 41 H -0.041 1.041 42 H 0.004 0.996 43 H 0.263 0.737 44 H 0.014 0.986 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.034 18.664 -10.699 22.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.137 4.137 3 N -0.090 5.090 4 O 0.039 5.961 5 C -0.079 4.079 6 C -0.122 4.122 7 C -0.197 4.197 8 C -0.183 4.183 9 C -0.056 4.056 10 N -0.297 5.297 11 C 0.410 3.590 12 O -0.480 6.480 13 N -0.355 5.355 14 C 0.000 4.000 15 C -0.079 4.079 16 N -0.262 5.262 17 C 0.082 3.918 18 C -0.556 4.556 19 H 0.090 0.910 20 C -0.198 4.198 21 N -0.578 5.578 22 Si 0.794 3.206 23 H -0.180 1.180 24 H -0.207 1.207 25 H -0.210 1.210 26 C -0.087 4.087 27 C 0.025 3.975 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.161 0.839 32 H 0.118 0.882 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.117 0.883 36 H 0.265 0.735 37 H 0.109 0.891 38 H 0.124 0.876 39 H 0.034 0.966 40 H 0.107 0.893 41 H -0.023 1.023 42 H 0.022 0.978 43 H 0.072 0.928 44 H 0.032 0.968 45 H 0.100 0.900 46 H 0.110 0.890 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.996 20.267 -10.447 23.342 hybrid contribution 0.762 -1.963 0.645 2.203 sum 5.758 18.303 -9.802 21.547 Atomic orbital electron populations 1.20020 0.84772 1.02563 1.03164 1.23718 0.99890 0.87936 1.02165 1.73806 0.89571 1.23789 1.21792 1.84795 1.20968 1.21775 1.68529 1.23345 0.96153 0.83418 1.04962 1.20545 0.83776 0.99257 1.08597 1.23171 0.95975 1.00375 1.00215 1.23244 0.99631 1.04306 0.91097 1.17740 0.91406 0.85632 1.10814 1.41673 1.33344 1.05105 1.49604 1.15802 0.80632 0.82623 0.79961 1.90925 1.54720 1.52855 1.49526 1.47366 1.39245 1.04548 1.44369 1.21947 0.97473 0.88008 0.92526 1.22363 0.91550 0.96974 0.96969 1.62001 1.32082 1.04837 1.27279 1.19376 0.92551 0.87243 0.92646 1.21492 1.44322 0.95936 0.93881 0.91010 1.25931 0.95534 1.01345 0.96980 1.70102 1.49242 1.23515 1.14930 0.85330 0.77468 0.78362 0.79427 1.18016 1.20730 1.21000 1.22472 0.99075 0.92823 0.94323 1.21543 0.88762 0.94760 0.92458 0.90600 0.90406 0.90988 0.83889 0.88248 0.85993 0.85391 0.88283 0.73533 0.89104 0.87569 0.96578 0.89264 1.02319 0.97811 0.92813 0.96759 0.89950 0.88998 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.19 8.52 71.23 0.61 -0.58 16 2 C 0.02 0.63 6.98 43.68 0.30 0.93 16 3 N -0.38 -10.48 12.06 -48.97 -0.59 -11.07 16 4 O 0.10 2.42 11.00 69.29 0.76 3.18 16 5 C -0.01 -0.25 6.97 25.13 0.18 -0.07 16 6 C -0.10 -1.39 6.27 -11.54 -0.07 -1.47 16 7 C -0.16 -1.68 10.19 30.62 0.31 -1.37 16 8 C -0.15 -1.33 10.24 30.62 0.31 -1.01 16 9 C 0.04 1.05 6.68 38.03 0.25 1.30 16 10 N -0.64 -13.84 5.39 -316.42 -1.71 -15.54 16 11 C 0.71 19.15 7.79 179.05 1.40 20.55 16 12 O -0.60 -19.73 11.95 -4.04 -0.05 -19.78 16 13 N -0.62 -16.04 3.01 -835.91 -2.52 -18.55 16 14 C 0.12 2.79 6.60 86.35 0.57 3.36 16 15 C 0.05 1.63 5.46 86.39 0.47 2.10 16 16 N -0.54 -20.97 4.62 -899.82 -4.16 -25.13 16 17 C 0.21 10.46 4.72 85.56 0.40 10.86 16 18 C -0.52 -27.29 8.41 25.60 0.22 -27.07 16 19 H 0.07 3.60 7.13 -2.91 -0.02 3.58 16 20 C 0.00 0.00 5.46 84.66 0.46 0.46 16 21 N -0.94 -54.69 13.29 21.45 0.28 -54.40 16 22 Si 0.97 41.82 29.54 68.60 2.03 43.85 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 26 C 0.04 1.43 5.62 86.38 0.49 1.92 16 27 C 0.15 4.11 6.58 86.35 0.57 4.68 16 28 H 0.08 2.10 7.38 -2.39 -0.02 2.08 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.81 7.11 -2.39 -0.02 1.79 16 31 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.10 1.16 8.02 -2.39 -0.02 1.14 16 33 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.42 6.52 6.31 -92.71 -0.59 5.93 16 37 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.11 1.59 5.62 -2.39 -0.01 1.58 16 39 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.09 3.05 6.67 -2.39 -0.02 3.04 16 41 H -0.04 -2.28 8.12 -2.39 -0.02 -2.30 16 42 H 0.00 0.21 7.97 -2.39 -0.02 0.19 16 43 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 44 H 0.01 0.51 8.14 -2.39 -0.02 0.50 16 45 H 0.08 2.77 7.99 -2.38 -0.02 2.75 16 46 H 0.09 2.58 7.10 -2.39 -0.02 2.56 16 47 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -69.09 379.67 0.93 -68.16 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.41 Total: 14.71 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 6.47 Total: 14.58 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -8.68 Total: -124.70 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: 0.71 Total: -16.59 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -69.09 0.93 -68.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602943855.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.256 kcal (2) G-P(sol) polarization free energy of solvation -69.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds