Wall clock time and date at job start Tue Mar 31 2020 19:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30178 * 126.81262 * 2 1 4 4 O 1.20888 * 111.73896 * 180.02562 * 3 2 1 5 5 C 1.34282 * 111.63631 * 359.72851 * 4 3 2 6 6 C 1.50701 * 126.82672 * 180.29573 * 5 4 3 7 7 C 1.53003 * 117.49584 * 8.79055 * 6 5 4 8 8 C 1.52999 * 117.49736 * 300.17049 * 6 5 4 9 9 C 1.35863 * 106.35546 * 0.44144 * 5 4 3 10 10 N 1.40778 * 128.05446 * 179.86034 * 9 5 4 11 11 C 1.34773 * 119.99679 * 138.36016 * 10 9 5 12 12 O 1.21606 * 120.00179 * 2.15581 * 11 10 9 13 13 N 1.34775 * 120.00076 * 182.15377 * 11 10 9 14 14 C 1.46499 * 120.00483 * 179.97438 * 13 11 10 15 15 C 1.53353 * 109.41899 * 275.13350 * 14 13 11 16 16 C 1.53193 * 109.14805 * 178.67504 * 15 14 13 17 17 N 1.46926 * 108.89886 * 54.57370 * 16 15 14 18 18 C 1.36936 * 120.63044 * 126.29596 * 17 16 15 19 19 H 1.07997 * 120.00350 * 335.64600 * 18 17 16 20 20 C 1.38812 * 119.99724 * 155.64645 * 18 17 16 21 21 N 1.31620 * 120.00066 * 338.99108 * 20 18 17 22 22 Si 1.86800 * 119.99971 * 158.98589 * 20 18 17 23 23 H 1.48499 * 109.47000 * 89.99851 * 22 20 18 24 24 H 1.48500 * 109.47291 * 209.99989 * 22 20 18 25 25 H 1.48506 * 109.47185 * 330.00103 * 22 20 18 26 26 C 1.46926 * 118.73595 * 306.32777 * 17 16 15 27 27 C 1.53040 * 109.46199 * 155.00097 * 14 13 11 28 28 H 1.09003 * 109.46971 * 275.39450 * 1 2 3 29 29 H 1.09006 * 109.47080 * 35.38603 * 1 2 3 30 30 H 1.08990 * 109.47523 * 155.39353 * 1 2 3 31 31 H 1.09000 * 115.54873 * 154.49998 * 6 5 4 32 32 H 1.08994 * 117.50133 * 0.02562 * 7 6 5 33 33 H 1.09004 * 117.49496 * 145.01982 * 7 6 5 34 34 H 1.09001 * 117.49895 * 214.97352 * 8 6 5 35 35 H 1.08997 * 117.50230 * 359.97438 * 8 6 5 36 36 H 0.96992 * 119.99957 * 318.35594 * 10 9 5 37 37 H 0.97002 * 119.99717 * 0.02562 * 13 11 10 38 38 H 1.09006 * 109.45929 * 35.03054 * 14 13 11 39 39 H 1.09000 * 109.68635 * 58.70624 * 15 14 13 40 40 H 1.09007 * 109.47086 * 298.50827 * 15 14 13 41 41 H 1.08999 * 109.58201 * 294.71228 * 16 15 14 42 42 H 1.09003 * 109.58760 * 174.43957 * 16 15 14 43 43 H 0.97003 * 119.99897 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.58492 * 173.39719 * 26 17 16 45 45 H 1.09001 * 109.58115 * 293.66985 * 26 17 16 46 46 H 1.08999 * 109.49465 * 61.43830 * 27 14 13 47 47 H 1.08995 * 109.52686 * 301.35445 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0422 0.0000 4 8 3.4543 0.7278 -0.0005 5 6 3.6077 -0.6062 0.0050 6 6 4.9094 -1.3657 0.0124 7 6 6.1947 -0.5624 0.2214 8 6 5.8674 -1.1369 -1.1584 9 6 2.3564 -1.1353 -0.0008 10 7 1.9888 -2.4942 -0.0010 11 6 0.9669 -2.9160 0.7698 12 8 0.3372 -2.1166 1.4355 13 7 0.6428 -4.2238 0.8028 14 6 -0.4677 -4.6824 1.6411 15 6 0.0360 -4.9184 3.0702 16 6 -1.1365 -5.3658 3.9488 17 7 -1.7745 -6.5363 3.3310 18 6 -1.9562 -7.6902 4.0457 19 1 -1.3197 -7.9081 4.8904 20 6 -2.9586 -8.5798 3.6842 21 7 -3.9758 -8.1658 2.9587 22 14 -2.8639 -10.3646 4.2274 23 1 -3.5423 -10.5194 5.5393 24 1 -3.5336 -11.2250 3.2192 25 1 -1.4405 -10.7682 4.3555 26 6 -2.2133 -6.4454 1.9317 27 6 -1.0305 -5.9872 1.0728 28 1 -0.3633 0.0966 1.0231 29 1 -0.3633 0.8379 -0.5951 30 1 -0.3634 -0.9342 -0.4279 31 1 4.8666 -2.3677 0.4394 32 1 6.0989 0.5152 0.3539 33 1 6.9979 -1.0360 0.7862 34 1 6.4553 -1.9883 -1.5014 35 1 5.5561 -0.4375 -1.9342 36 1 2.4710 -3.1269 -0.5560 37 1 1.1453 -4.8615 0.2720 38 1 -1.2506 -3.9241 1.6534 39 1 0.4574 -3.9953 3.4682 40 1 0.8014 -5.6946 3.0621 41 1 -1.8610 -4.5557 4.0313 42 1 -0.7698 -5.6304 4.9406 43 1 -4.6765 -8.7874 2.7064 44 1 -2.5549 -7.4230 1.5917 45 1 -3.0274 -5.7252 1.8502 46 1 -0.2549 -6.7530 1.0835 47 1 -1.3663 -5.8237 0.0488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613498601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:42 Heat of formation + Delta-G solvation = 82.039743 kcal Electronic energy + Delta-G solvation = -29013.949303 eV Core-core repulsion = 25008.771741 eV Total energy + Delta-G solvation = -4005.177562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.07305 -40.25954 -37.86670 -37.61999 -35.68327 -34.48626 -33.68840 -32.15026 -30.89079 -30.07857 -29.24401 -28.61863 -25.18875 -24.05519 -23.41444 -22.82890 -22.29079 -21.81611 -20.84059 -19.99008 -19.51186 -18.30876 -17.96983 -17.70331 -16.80730 -16.56009 -15.94154 -15.26991 -15.23151 -14.78229 -14.42354 -14.17284 -13.79310 -13.58978 -13.40243 -13.22078 -13.09442 -12.89902 -12.63679 -12.40098 -12.37571 -12.02714 -11.69037 -11.62524 -11.50287 -11.18501 -11.02314 -10.90171 -10.71996 -10.63949 -10.48954 -10.33543 -10.15204 -10.07092 -9.77186 -9.68330 -9.60079 -8.89846 -8.56257 -8.44597 -6.77333 -5.83383 -3.20135 1.14091 2.00659 2.30321 2.92679 3.19048 3.35404 3.40546 3.42985 3.45266 3.94637 4.04897 4.23611 4.33745 4.47564 4.47610 4.62036 4.98842 5.11160 5.17827 5.27478 5.35447 5.40145 5.45065 5.45616 5.53982 5.56636 5.64414 5.66248 5.76907 5.82116 6.02231 6.15642 6.23044 6.27327 6.31520 6.40573 6.51134 6.53752 6.70980 6.77014 6.89088 6.98042 7.27458 7.57303 7.76432 7.89658 8.12401 8.38798 8.52456 9.16681 9.81431 10.36453 11.25793 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023160 B = 0.002337 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.669263 B =11980.157761 C =12605.108794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.041 3.959 3 N -0.361 5.361 4 O 0.102 5.898 5 C -0.032 4.032 6 C -0.082 4.082 7 C -0.163 4.163 8 C -0.164 4.164 9 C 0.069 3.931 10 N -0.660 5.660 11 C 0.701 3.299 12 O -0.567 6.567 13 N -0.732 5.732 14 C 0.169 3.831 15 C -0.139 4.139 16 C 0.148 3.852 17 N -0.593 5.593 18 C -0.251 4.251 19 H 0.067 0.933 20 C 0.000 4.000 21 N -0.902 5.902 22 Si 0.899 3.101 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.172 3.828 27 C -0.145 4.145 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.408 0.592 37 H 0.393 0.607 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.021 0.979 42 H 0.056 0.944 43 H 0.254 0.746 44 H 0.095 0.905 45 H 0.021 0.979 46 H 0.060 0.940 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.398 12.176 -11.063 24.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.119 4.119 3 N -0.068 5.068 4 O 0.040 5.960 5 C -0.099 4.099 6 C -0.101 4.101 7 C -0.200 4.200 8 C -0.201 4.201 9 C -0.030 4.030 10 N -0.313 5.313 11 C 0.402 3.598 12 O -0.443 6.443 13 N -0.385 5.385 14 C 0.066 3.934 15 C -0.180 4.180 16 C 0.020 3.980 17 N -0.316 5.316 18 C -0.381 4.381 19 H 0.085 0.915 20 C -0.198 4.198 21 N -0.546 5.546 22 Si 0.729 3.271 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.045 3.955 27 C -0.185 4.185 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.152 0.848 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.244 0.756 37 H 0.226 0.774 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.039 0.961 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.113 0.887 45 H 0.039 0.961 46 H 0.079 0.921 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.383 14.081 -10.449 24.690 hybrid contribution 0.397 -2.436 -0.249 2.481 sum 17.779 11.645 -10.698 23.794 Atomic orbital electron populations 1.20120 0.85064 1.02402 1.03968 1.23471 0.99344 0.87411 1.01714 1.73831 0.89033 1.23277 1.20681 1.84822 1.21521 1.20943 1.68727 1.22824 0.95331 0.84138 1.07618 1.20320 0.84601 0.98994 1.06144 1.23052 0.96813 1.00744 0.99438 1.23131 1.01221 1.03900 0.91849 1.17614 0.90854 0.85599 1.08977 1.41805 1.36506 1.05224 1.47772 1.15970 0.80214 0.83506 0.80139 1.90972 1.53643 1.53299 1.46372 1.45541 1.37393 1.05494 1.50071 1.21056 0.86514 0.96591 0.89283 1.22452 0.99989 1.00124 0.95429 1.20861 0.92242 0.90027 0.94820 1.44140 1.69408 1.09977 1.08032 1.19192 1.11070 0.95543 1.12255 0.91486 1.24939 0.94808 0.99363 1.00731 1.70064 1.09155 1.33607 1.41811 0.86343 0.77591 0.85316 0.77845 1.21421 1.21555 1.20556 1.20791 0.90383 1.01616 0.82716 1.22538 1.01468 0.95095 0.99448 0.89152 0.91674 0.90555 0.84813 0.87722 0.87596 0.87553 0.88147 0.75608 0.77405 0.89835 0.92621 0.92379 0.96136 0.92581 0.93600 0.88680 0.96085 0.92133 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 8.57 36.00 0.31 -0.46 16 2 C 0.04 0.57 6.97 -81.94 -0.57 0.00 16 3 N -0.36 -5.04 12.06 33.56 0.40 -4.64 16 4 O 0.10 1.25 11.00 16.54 0.18 1.43 16 5 C -0.03 -0.34 6.97 -35.16 -0.24 -0.59 16 6 C -0.08 -0.57 6.27 -91.77 -0.58 -1.15 16 7 C -0.16 -0.93 10.18 -26.73 -0.27 -1.20 16 8 C -0.16 -0.84 10.23 -26.73 -0.27 -1.11 16 9 C 0.07 0.84 6.64 -83.24 -0.55 0.29 16 10 N -0.66 -6.98 5.48 -13.99 -0.08 -7.06 16 11 C 0.70 9.65 7.96 -86.92 -0.69 8.95 16 12 O -0.57 -9.90 12.44 5.27 0.07 -9.84 16 13 N -0.73 -9.30 5.08 -58.47 -0.30 -9.60 16 14 C 0.17 2.76 2.42 -67.73 -0.16 2.60 16 15 C -0.14 -2.46 5.68 -26.45 -0.15 -2.61 16 16 C 0.15 3.10 6.50 -3.71 -0.02 3.07 16 17 N -0.59 -14.45 3.01 -172.32 -0.52 -14.97 16 18 C -0.25 -6.75 9.60 -15.06 -0.14 -6.89 16 19 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 20 C 0.00 -0.01 4.85 -17.43 -0.08 -0.09 16 21 N -0.90 -25.61 11.18 55.49 0.62 -24.99 16 22 Si 0.90 21.19 29.60 -169.99 -5.03 16.16 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.17 3.89 5.36 -3.71 -0.02 3.87 16 27 C -0.15 -2.51 5.55 -26.61 -0.15 -2.66 16 28 H 0.09 1.31 7.57 -51.93 -0.39 0.92 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.02 7.08 -51.93 -0.37 0.66 16 31 H 0.13 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.10 0.65 8.02 -51.93 -0.42 0.23 16 33 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.41 2.86 8.84 -40.82 -0.36 2.50 16 37 H 0.39 3.79 8.62 -40.82 -0.35 3.44 16 38 H 0.08 1.55 7.58 -51.93 -0.39 1.15 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 1.16 7.92 -51.93 -0.41 0.75 16 43 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.10 2.41 5.90 -51.93 -0.31 2.11 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 382.23 15.07 5.76 5.76 Total: -1.00 -32.10 382.23 -9.70 -41.80 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.20 Total: 3.90 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -3.61 Total: 2.04 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: 0.13 Total: -61.25 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.25 Total: -8.41 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.10 -9.70 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613498601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.838 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds