Wall clock time and date at job start Tue Mar 31 2020 19:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30178 * 126.81262 * 2 1 4 4 O 1.20888 * 111.73896 * 180.02562 * 3 2 1 5 5 C 1.34282 * 111.63631 * 359.72851 * 4 3 2 6 6 C 1.50701 * 126.82672 * 180.29573 * 5 4 3 7 7 C 1.53003 * 117.49584 * 8.79055 * 6 5 4 8 8 C 1.52999 * 117.49736 * 300.17049 * 6 5 4 9 9 C 1.35863 * 106.35546 * 0.44144 * 5 4 3 10 10 N 1.40778 * 128.05446 * 179.86034 * 9 5 4 11 11 C 1.34773 * 119.99679 * 138.36016 * 10 9 5 12 12 O 1.21606 * 120.00179 * 2.15581 * 11 10 9 13 13 N 1.34775 * 120.00076 * 182.15377 * 11 10 9 14 14 C 1.46499 * 120.00483 * 179.97438 * 13 11 10 15 15 C 1.53353 * 109.41899 * 275.13350 * 14 13 11 16 16 C 1.53193 * 109.14805 * 178.67504 * 15 14 13 17 17 N 1.46926 * 108.89886 * 54.57370 * 16 15 14 18 18 C 1.36936 * 120.63044 * 126.29596 * 17 16 15 19 19 H 1.07997 * 120.00350 * 335.64600 * 18 17 16 20 20 C 1.38812 * 119.99724 * 155.64645 * 18 17 16 21 21 N 1.31620 * 120.00066 * 338.99108 * 20 18 17 22 22 Si 1.86800 * 119.99971 * 158.98589 * 20 18 17 23 23 H 1.48499 * 109.47000 * 89.99851 * 22 20 18 24 24 H 1.48500 * 109.47291 * 209.99989 * 22 20 18 25 25 H 1.48506 * 109.47185 * 330.00103 * 22 20 18 26 26 C 1.46926 * 118.73595 * 306.32777 * 17 16 15 27 27 C 1.53040 * 109.46199 * 155.00097 * 14 13 11 28 28 H 1.09003 * 109.46971 * 275.39450 * 1 2 3 29 29 H 1.09006 * 109.47080 * 35.38603 * 1 2 3 30 30 H 1.08990 * 109.47523 * 155.39353 * 1 2 3 31 31 H 1.09000 * 115.54873 * 154.49998 * 6 5 4 32 32 H 1.08994 * 117.50133 * 0.02562 * 7 6 5 33 33 H 1.09004 * 117.49496 * 145.01982 * 7 6 5 34 34 H 1.09001 * 117.49895 * 214.97352 * 8 6 5 35 35 H 1.08997 * 117.50230 * 359.97438 * 8 6 5 36 36 H 0.96992 * 119.99957 * 318.35594 * 10 9 5 37 37 H 0.97002 * 119.99717 * 0.02562 * 13 11 10 38 38 H 1.09006 * 109.45929 * 35.03054 * 14 13 11 39 39 H 1.09000 * 109.68635 * 58.70624 * 15 14 13 40 40 H 1.09007 * 109.47086 * 298.50827 * 15 14 13 41 41 H 1.08999 * 109.58201 * 294.71228 * 16 15 14 42 42 H 1.09003 * 109.58760 * 174.43957 * 16 15 14 43 43 H 0.97003 * 119.99897 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.58492 * 173.39719 * 26 17 16 45 45 H 1.09001 * 109.58115 * 293.66985 * 26 17 16 46 46 H 1.08999 * 109.49465 * 61.43830 * 27 14 13 47 47 H 1.08995 * 109.52686 * 301.35445 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0422 0.0000 4 8 3.4543 0.7278 -0.0005 5 6 3.6077 -0.6062 0.0050 6 6 4.9094 -1.3657 0.0124 7 6 6.1947 -0.5624 0.2214 8 6 5.8674 -1.1369 -1.1584 9 6 2.3564 -1.1353 -0.0008 10 7 1.9888 -2.4942 -0.0010 11 6 0.9669 -2.9160 0.7698 12 8 0.3372 -2.1166 1.4355 13 7 0.6428 -4.2238 0.8028 14 6 -0.4677 -4.6824 1.6411 15 6 0.0360 -4.9184 3.0702 16 6 -1.1365 -5.3658 3.9488 17 7 -1.7745 -6.5363 3.3310 18 6 -1.9562 -7.6902 4.0457 19 1 -1.3197 -7.9081 4.8904 20 6 -2.9586 -8.5798 3.6842 21 7 -3.9758 -8.1658 2.9587 22 14 -2.8639 -10.3646 4.2274 23 1 -3.5423 -10.5194 5.5393 24 1 -3.5336 -11.2250 3.2192 25 1 -1.4405 -10.7682 4.3555 26 6 -2.2133 -6.4454 1.9317 27 6 -1.0305 -5.9872 1.0728 28 1 -0.3633 0.0966 1.0231 29 1 -0.3633 0.8379 -0.5951 30 1 -0.3634 -0.9342 -0.4279 31 1 4.8666 -2.3677 0.4394 32 1 6.0989 0.5152 0.3539 33 1 6.9979 -1.0360 0.7862 34 1 6.4553 -1.9883 -1.5014 35 1 5.5561 -0.4375 -1.9342 36 1 2.4710 -3.1269 -0.5560 37 1 1.1453 -4.8615 0.2720 38 1 -1.2506 -3.9241 1.6534 39 1 0.4574 -3.9953 3.4682 40 1 0.8014 -5.6946 3.0621 41 1 -1.8610 -4.5557 4.0313 42 1 -0.7698 -5.6304 4.9406 43 1 -4.6765 -8.7874 2.7064 44 1 -2.5549 -7.4230 1.5917 45 1 -3.0274 -5.7252 1.8502 46 1 -0.2549 -6.7530 1.0835 47 1 -1.3663 -5.8237 0.0488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613498601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:41 Heat of formation + Delta-G solvation = 61.753841 kcal Electronic energy + Delta-G solvation = -29014.828966 eV Core-core repulsion = 25008.771741 eV Total energy + Delta-G solvation = -4006.057225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.03916 -41.38672 -39.23192 -38.28937 -36.81269 -35.89385 -34.78912 -33.79031 -32.08425 -31.58664 -30.80112 -29.64804 -26.96935 -24.80982 -24.60521 -23.88579 -23.35990 -23.14659 -21.93147 -21.08415 -20.83361 -19.52489 -18.91328 -18.70566 -18.52340 -17.42031 -16.94176 -16.68769 -16.37053 -16.09783 -15.78132 -15.36596 -15.25587 -14.94384 -14.74556 -14.46312 -14.25878 -14.20058 -14.04635 -13.74738 -13.22504 -13.15149 -13.03630 -12.58416 -12.56109 -12.50464 -12.42561 -12.33041 -12.20348 -12.01531 -11.85310 -11.60451 -11.55639 -11.40913 -11.32632 -11.18163 -10.63174 -10.52592 -10.06809 -9.44832 -8.75246 -7.87864 -5.27690 0.28010 0.98707 1.34294 1.49061 1.50876 1.60703 2.03479 2.16299 2.53447 2.90733 3.02771 3.25988 3.29249 3.32958 3.66796 3.71519 3.89286 3.92595 4.05102 4.06498 4.17574 4.35171 4.45267 4.47858 4.53125 4.61685 4.65812 4.72493 4.81036 4.82774 4.86301 5.00200 5.01360 5.07248 5.12053 5.14409 5.16801 5.27342 5.30609 5.38989 5.49131 5.55591 5.65321 5.71364 5.87677 6.37913 6.96843 7.14660 7.19406 7.48206 7.85793 8.36652 9.19557 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023160 B = 0.002337 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.669263 B =11980.157761 C =12605.108794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.020 3.980 3 N -0.383 5.383 4 O 0.101 5.899 5 C -0.011 4.011 6 C -0.099 4.099 7 C -0.163 4.163 8 C -0.147 4.147 9 C 0.046 3.954 10 N -0.639 5.639 11 C 0.702 3.298 12 O -0.606 6.606 13 N -0.716 5.716 14 C 0.183 3.817 15 C -0.123 4.123 16 C 0.144 3.856 17 N -0.609 5.609 18 C -0.262 4.262 19 H 0.068 0.932 20 C -0.051 4.051 21 N -0.934 5.934 22 Si 0.965 3.035 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.269 1.269 26 C 0.175 3.825 27 C -0.127 4.127 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.150 0.850 32 H 0.095 0.905 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.095 0.905 36 H 0.428 0.572 37 H 0.413 0.587 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.006 0.994 42 H 0.055 0.945 43 H 0.251 0.749 44 H 0.067 0.933 45 H -0.006 1.006 46 H 0.072 0.928 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.577 11.304 -12.149 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.140 4.140 3 N -0.091 5.091 4 O 0.039 5.961 5 C -0.078 4.078 6 C -0.118 4.118 7 C -0.200 4.200 8 C -0.184 4.184 9 C -0.053 4.053 10 N -0.293 5.293 11 C 0.402 3.598 12 O -0.484 6.484 13 N -0.371 5.371 14 C 0.078 3.922 15 C -0.163 4.163 16 C 0.018 3.982 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.086 0.914 20 C -0.246 4.246 21 N -0.581 5.581 22 Si 0.793 3.207 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.194 1.194 26 C 0.048 3.952 27 C -0.166 4.166 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.168 0.832 32 H 0.114 0.886 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.114 0.886 36 H 0.267 0.733 37 H 0.250 0.750 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.024 0.976 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.085 0.915 45 H 0.012 0.988 46 H 0.091 0.909 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 20.631 13.208 -11.579 27.095 hybrid contribution -0.541 -2.059 0.117 2.132 sum 20.090 11.149 -11.462 25.677 Atomic orbital electron populations 1.19994 0.85248 1.02628 1.02911 1.23692 0.99685 0.88352 1.02274 1.73811 0.89643 1.23844 1.21833 1.84791 1.20872 1.22033 1.68419 1.23446 0.96353 0.83334 1.04667 1.20578 0.83337 0.99375 1.08461 1.23167 0.96238 1.00322 1.00232 1.23229 0.99664 1.04319 0.91159 1.17687 0.91162 0.85744 1.10748 1.41422 1.35631 1.05051 1.47183 1.16024 0.80469 0.83228 0.80051 1.90968 1.55087 1.54322 1.48069 1.45044 1.36597 1.05703 1.49733 1.20597 0.86989 0.95449 0.89155 1.22234 0.98409 1.00251 0.95452 1.20951 0.92971 0.88623 0.95648 1.44399 1.69659 1.10372 1.08797 1.19517 1.10780 0.96506 1.12390 0.91403 1.25685 0.94552 1.02978 1.01401 1.70215 1.09862 1.34599 1.43378 0.85315 0.77846 0.80510 0.76988 1.21572 1.21761 1.19385 1.20633 0.91993 0.99486 0.83064 1.22240 0.99416 0.95576 0.99379 0.91054 0.90392 0.91080 0.83215 0.88599 0.85755 0.85165 0.88632 0.73253 0.75041 0.92167 0.92356 0.91408 0.97559 0.92610 0.94022 0.91512 0.98771 0.90922 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.35 8.57 71.23 0.61 -0.74 16 2 C 0.02 0.55 6.97 43.68 0.30 0.86 16 3 N -0.38 -10.67 12.06 -48.99 -0.59 -11.27 16 4 O 0.10 2.37 11.00 69.36 0.76 3.14 16 5 C -0.01 -0.21 6.97 25.13 0.18 -0.04 16 6 C -0.10 -1.07 6.27 -11.54 -0.07 -1.15 16 7 C -0.16 -1.36 10.18 30.60 0.31 -1.05 16 8 C -0.15 -0.99 10.23 30.59 0.31 -0.68 16 9 C 0.05 1.06 6.64 38.03 0.25 1.31 16 10 N -0.64 -12.08 5.48 -316.42 -1.73 -13.81 16 11 C 0.70 18.15 7.96 179.06 1.43 19.58 16 12 O -0.61 -21.01 12.44 -4.05 -0.05 -21.06 16 13 N -0.72 -16.44 5.08 -457.16 -2.32 -18.77 16 14 C 0.18 5.75 2.42 45.12 0.11 5.86 16 15 C -0.12 -4.19 5.68 30.78 0.17 -4.02 16 16 C 0.14 6.10 6.50 86.36 0.56 6.67 16 17 N -0.61 -30.00 3.01 -699.10 -2.10 -32.10 16 18 C -0.26 -14.15 9.60 84.03 0.81 -13.34 16 19 H 0.07 3.58 7.89 -2.91 -0.02 3.55 16 20 C -0.05 -2.79 4.85 84.86 0.41 -2.38 16 21 N -0.93 -54.31 11.18 21.65 0.24 -54.07 16 22 Si 0.97 43.78 29.60 68.60 2.03 45.81 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 26 C 0.17 8.05 5.36 86.36 0.46 8.52 16 27 C -0.13 -4.18 5.55 30.67 0.17 -4.01 16 28 H 0.07 2.17 7.57 -2.39 -0.02 2.15 16 29 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.07 1.94 7.08 -2.39 -0.02 1.92 16 31 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 0.99 8.02 -2.39 -0.02 0.97 16 33 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.43 4.55 8.84 -92.71 -0.82 3.73 16 37 H 0.41 6.41 8.62 -92.71 -0.80 5.61 16 38 H 0.06 2.23 7.58 -2.38 -0.02 2.21 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 41 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.06 2.31 7.92 -2.39 -0.02 2.29 16 43 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 44 H 0.07 3.47 5.90 -2.39 -0.01 3.45 16 45 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 46 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -71.72 382.23 1.64 -70.07 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -0.61 Total: 16.66 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 6.02 Total: 15.40 kcal Atomic # 7 Polarization: -123.51 SS G_CDS: -6.51 Total: -130.02 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.71 Total: -17.93 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -71.72 1.64 -70.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613498601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.825 kcal (2) G-P(sol) polarization free energy of solvation -71.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds