Wall clock time and date at job start Tue Mar 31 2020 19:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35262 * 126.69478 * 2 1 4 4 C 1.41988 * 103.95726 * 179.97438 * 3 2 1 5 5 N 1.39724 * 126.89127 * 179.97438 * 4 3 2 6 6 C 1.38859 * 125.99344 * 2.59686 * 5 4 3 7 7 C 1.50695 * 126.05697 * 359.97438 * 6 5 4 8 8 C 1.32860 * 107.88597 * 180.26172 * 6 5 4 9 9 N 1.38701 * 107.92590 * 359.61930 * 8 6 5 10 10 C 1.46504 * 125.97166 * 180.15216 * 9 8 6 11 11 N 1.46892 * 109.47345 * 251.38548 * 10 9 8 12 12 C 1.46903 * 111.00175 * 211.88900 * 11 10 9 13 13 C 1.50695 * 109.47386 * 168.85562 * 12 11 10 14 14 H 1.08005 * 120.00006 * 4.39270 * 13 12 11 15 15 C 1.37877 * 120.00351 * 184.39400 * 13 12 11 16 16 N 1.31517 * 119.99681 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00453 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47143 * 59.99451 * 17 15 13 19 19 H 1.48499 * 109.47481 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46774 * 299.99664 * 17 15 13 21 21 C 1.46903 * 111.00134 * 87.93354 * 11 10 9 22 22 C 1.52999 * 109.47250 * 282.03053 * 21 11 10 23 23 C 1.53004 * 109.46950 * 42.03400 * 21 11 10 24 24 C 1.34749 * 108.06379 * 0.38623 * 9 8 6 25 25 O 1.21772 * 125.94629 * 179.74703 * 24 9 8 26 26 N 1.30712 * 106.22067 * 0.22693 * 4 3 2 27 27 O 1.20913 * 111.47580 * 359.59980 * 26 4 3 28 28 H 1.09001 * 109.47350 * 90.00221 * 1 2 3 29 29 H 1.09000 * 109.46742 * 209.99929 * 1 2 3 30 30 H 1.08994 * 109.47389 * 330.00039 * 1 2 3 31 31 H 1.08003 * 128.02019 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47394 * 84.24029 * 7 6 5 33 33 H 1.08994 * 109.47282 * 324.23831 * 7 6 5 34 34 H 1.09002 * 109.47360 * 204.23953 * 7 6 5 35 35 H 1.08002 * 126.03563 * 179.73795 * 8 6 5 36 36 H 1.09006 * 109.46672 * 11.38412 * 10 9 8 37 37 H 1.08992 * 109.47160 * 131.37680 * 10 9 8 38 38 H 1.08996 * 109.47024 * 288.85626 * 12 11 10 39 39 H 1.09004 * 109.46787 * 48.85431 * 12 11 10 40 40 H 0.97001 * 120.00063 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.46731 * 162.02727 * 21 11 10 42 42 H 1.08990 * 109.46939 * 68.10584 * 22 21 11 43 43 H 1.09003 * 109.46860 * 188.10472 * 22 21 11 44 44 H 1.09001 * 109.46765 * 308.09861 * 22 21 11 45 45 H 1.08998 * 109.47011 * 49.07898 * 23 21 11 46 46 H 1.09002 * 109.46740 * 169.08036 * 23 21 11 47 47 H 1.08998 * 109.46407 * 289.07628 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.0846 0.0000 4 6 3.6248 0.5358 0.0006 5 7 4.8303 1.2422 0.0004 6 6 4.9669 2.6232 0.0504 7 6 3.8421 3.6240 0.1139 8 6 6.2648 2.9059 0.0259 9 7 6.9617 1.7081 -0.0309 10 6 8.4189 1.5613 -0.0702 11 7 8.8303 1.1169 -1.4085 12 6 10.0270 0.2678 -1.3365 13 6 10.2593 -0.3873 -2.6736 14 1 9.6282 -0.1383 -3.5139 15 6 11.2775 -1.3047 -2.8242 16 7 12.0457 -1.6084 -1.8008 17 14 11.5660 -2.1163 -4.4817 18 1 11.8679 -1.0753 -5.4967 19 1 12.7119 -3.0554 -4.3804 20 1 10.3477 -2.8630 -4.8858 21 6 9.0514 2.2639 -2.2993 22 6 7.7032 2.8002 -2.7845 23 6 9.7944 3.3643 -1.5390 24 6 6.0643 0.7030 -0.0489 25 8 6.3233 -0.4857 -0.1010 26 7 3.4764 -0.7629 -0.0041 27 8 2.3083 -1.0750 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 2.0305 2.1264 -0.0004 32 1 3.5250 3.7491 1.1492 33 1 3.0029 3.2658 -0.4823 34 1 4.1847 4.5812 -0.2793 35 1 6.7003 3.8940 0.0485 36 1 8.8867 2.5199 0.1541 37 1 8.7298 0.8234 0.6693 38 1 10.8911 0.8792 -1.0764 39 1 9.8827 -0.4996 -0.5760 40 1 12.7623 -2.2535 -1.9068 41 1 9.6469 1.9488 -3.1562 42 1 7.1670 3.2464 -1.9470 43 1 7.8679 3.5546 -3.5539 44 1 7.1143 1.9816 -3.1984 45 1 10.6576 2.9352 -1.0303 46 1 10.1288 4.1284 -2.2407 47 1 9.1258 3.8131 -0.8044 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739841397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:05 Heat of formation + Delta-G solvation = 85.556506 kcal Electronic energy + Delta-G solvation = -29988.122264 eV Core-core repulsion = 25983.097201 eV Total energy + Delta-G solvation = -4005.025063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.10584 -43.50889 -39.60354 -38.18395 -36.73071 -34.99815 -34.59546 -33.74060 -32.50687 -32.10491 -29.68439 -28.66477 -28.07972 -27.36908 -26.38282 -24.65721 -24.12029 -23.68416 -22.10798 -21.04142 -20.24702 -18.95605 -18.75378 -18.45327 -17.98809 -17.62713 -17.07424 -16.69925 -16.56122 -16.03187 -15.95312 -15.60110 -14.95221 -14.79119 -14.63495 -14.46261 -14.21819 -14.17145 -13.93916 -13.89619 -13.56600 -13.38009 -13.33778 -13.21119 -12.95160 -12.77318 -12.66104 -12.56558 -12.47979 -12.28229 -12.26063 -12.09688 -11.71021 -11.58569 -11.45915 -11.30204 -10.68686 -10.54466 -10.30376 -9.12443 -8.66601 -8.26737 -6.36440 0.37990 0.79269 0.84593 1.31253 1.36706 1.39047 1.44125 2.00450 2.20674 2.32489 2.36745 3.03319 3.08072 3.26905 3.52689 3.74865 3.91798 4.04666 4.06528 4.20683 4.24716 4.28720 4.30626 4.38931 4.50915 4.67707 4.70019 4.76562 4.78691 4.81017 4.91726 4.92972 4.95673 4.96727 5.08310 5.15616 5.18609 5.26165 5.30236 5.31736 5.40269 5.49761 5.57713 5.87361 5.97271 6.27561 6.35579 6.56930 6.76692 7.16271 7.31776 7.35440 8.83684 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013868 B = 0.003418 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.480084 B = 8189.472146 C = 9429.147288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.010 4.010 3 C -0.237 4.237 4 C 0.231 3.769 5 N -0.456 5.456 6 C 0.001 3.999 7 C -0.081 4.081 8 C 0.011 3.989 9 N -0.516 5.516 10 C 0.288 3.712 11 N -0.561 5.561 12 C 0.224 3.776 13 C -0.523 4.523 14 H 0.053 0.947 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.967 3.033 18 H -0.259 1.259 19 H -0.277 1.277 20 H -0.281 1.281 21 C 0.072 3.928 22 C -0.126 4.126 23 C -0.171 4.171 24 C 0.634 3.366 25 O -0.596 6.596 26 N -0.417 5.417 27 O 0.094 5.906 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.226 0.774 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.234 0.766 36 H 0.127 0.873 37 H 0.053 0.947 38 H -0.014 1.014 39 H -0.012 1.012 40 H 0.266 0.734 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.016 0.984 45 H 0.038 0.962 46 H 0.081 0.919 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.775 20.317 5.165 32.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.074 4.074 3 C -0.259 4.259 4 C -0.016 4.016 5 N -0.177 5.177 6 C -0.100 4.100 7 C -0.138 4.138 8 C -0.109 4.109 9 N -0.236 5.236 10 C 0.077 3.923 11 N -0.286 5.286 12 C 0.098 3.902 13 C -0.562 4.562 14 H 0.071 0.929 15 C -0.195 4.195 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.183 1.183 19 H -0.202 1.202 20 H -0.207 1.207 21 C -0.036 4.036 22 C -0.184 4.184 23 C -0.229 4.229 24 C 0.336 3.664 25 O -0.473 6.473 26 N -0.128 5.128 27 O 0.030 5.970 28 H 0.126 0.874 29 H 0.112 0.888 30 H 0.143 0.857 31 H 0.242 0.758 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.138 0.862 35 H 0.251 0.749 36 H 0.144 0.856 37 H 0.072 0.928 38 H 0.004 0.996 39 H 0.006 0.994 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.035 0.965 45 H 0.057 0.943 46 H 0.100 0.900 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.860 18.022 4.979 30.313 hybrid contribution 1.423 -0.641 -0.383 1.607 sum -22.438 17.381 4.595 28.752 Atomic orbital electron populations 1.20692 0.79363 1.06772 1.05962 1.25536 0.98579 0.84568 0.98718 1.22824 0.86122 1.03706 1.13287 1.20726 0.87521 0.88939 1.04410 1.41856 1.02216 1.07907 1.65723 1.21082 0.97520 0.80217 1.11186 1.20740 0.93038 0.95458 1.04523 1.22401 0.88960 0.91914 1.07666 1.45714 1.06597 1.06137 1.65149 1.22150 0.76219 1.02305 0.91588 1.61610 1.37025 1.20055 1.09938 1.19207 0.84826 0.90051 0.96132 1.21346 1.14219 1.24158 0.96455 0.92901 1.25871 0.95620 0.97022 1.00980 1.70061 1.20060 1.34726 1.32289 0.85479 0.77431 0.78552 0.79413 1.18344 1.20154 1.20666 1.21772 0.97202 0.88786 0.95821 1.21846 0.95384 0.99391 1.01756 1.22342 1.00053 0.98920 1.01566 1.16668 0.81477 0.85536 0.82730 1.91052 1.81350 1.15554 1.59314 1.74401 0.98129 1.15560 1.24758 1.84880 1.10103 1.34072 1.67900 0.87392 0.88753 0.85721 0.75794 0.88704 0.89947 0.86230 0.74938 0.85629 0.92831 0.99615 0.99411 0.92563 0.92263 0.90437 0.90408 0.96495 0.94264 0.90001 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.45 71.24 0.74 0.39 16 2 C -0.01 -0.18 7.48 25.00 0.19 0.01 16 3 C -0.24 -4.47 9.84 22.51 0.22 -4.25 16 4 C 0.23 7.60 7.84 134.02 1.05 8.65 16 5 N -0.46 -15.64 2.98 -470.96 -1.40 -17.04 16 6 C 0.00 0.02 6.88 40.27 0.28 0.30 16 7 C -0.08 -0.64 9.24 71.23 0.66 0.02 16 8 C 0.01 0.25 8.72 82.43 0.72 0.97 16 9 N -0.52 -18.17 2.45 -666.69 -1.63 -19.80 16 10 C 0.29 11.07 5.59 170.81 0.95 12.02 16 11 N -0.56 -26.13 4.46 -887.81 -3.96 -30.09 16 12 C 0.22 12.79 4.57 85.55 0.39 13.18 16 13 C -0.52 -32.26 8.32 25.60 0.21 -32.05 16 14 H 0.05 3.27 7.26 -2.91 -0.02 3.24 16 15 C 0.00 0.20 5.46 84.65 0.46 0.66 16 16 N -0.93 -59.31 13.29 21.45 0.28 -59.03 16 17 Si 0.97 47.89 29.54 68.60 2.03 49.92 16 18 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 20 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 21 C 0.07 2.70 2.70 44.92 0.12 2.82 16 22 C -0.13 -3.85 8.96 71.98 0.64 -3.21 16 23 C -0.17 -4.72 7.92 71.98 0.57 -4.15 16 24 C 0.63 28.37 8.47 179.07 1.52 29.88 16 25 O -0.60 -34.79 17.18 -4.58 -0.08 -34.87 16 26 N -0.42 -16.44 11.43 -56.21 -0.64 -17.08 16 27 O 0.09 2.81 11.19 71.25 0.80 3.60 16 28 H 0.11 0.25 8.14 -2.39 -0.02 0.24 16 29 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.23 1.93 5.29 -2.91 -0.02 1.92 16 32 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.55 5.30 -2.39 -0.01 0.54 16 34 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.23 2.34 7.96 -2.91 -0.02 2.32 16 36 H 0.13 3.61 4.83 -2.38 -0.01 3.60 16 37 H 0.05 2.39 7.51 -2.39 -0.02 2.37 16 38 H -0.01 -0.79 6.99 -2.39 -0.02 -0.80 16 39 H -0.01 -0.80 7.75 -2.39 -0.02 -0.82 16 40 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 41 H 0.06 2.63 6.59 -2.39 -0.02 2.61 16 42 H 0.08 1.90 4.63 -2.39 -0.01 1.89 16 43 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.04 1.26 6.99 -2.39 -0.02 1.25 16 46 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.08 1.71 6.44 -2.39 -0.02 1.70 16 Total: -1.00 -100.90 377.23 5.12 -95.77 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: 1.00 Total: 3.36 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 8.73 Total: 25.25 kcal Atomic # 7 Polarization: -135.69 SS G_CDS: -7.35 Total: -143.04 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: 0.72 Total: -31.26 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -100.90 5.12 -95.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739841397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.329 kcal (2) G-P(sol) polarization free energy of solvation -100.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds