Wall clock time and date at job start Tue Mar 31 2020 19:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35503 * 116.99765 * 2 1 4 4 C 1.39644 * 120.49053 * 179.72264 * 3 2 1 5 5 C 1.39149 * 118.20932 * 179.78573 * 4 3 2 6 6 C 1.48445 * 120.51958 * 180.23920 * 5 4 3 7 7 O 1.21475 * 120.00244 * 0.25792 * 6 5 4 8 8 N 1.34781 * 119.99700 * 180.25534 * 6 5 4 9 9 C 1.46498 * 119.99779 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.46273 * 325.00281 * 9 8 6 11 11 C 1.53052 * 109.45833 * 84.97467 * 9 8 6 12 12 C 1.53189 * 109.31231 * 181.38684 * 11 9 8 13 13 N 1.46936 * 108.77547 * 305.36299 * 12 11 9 14 14 C 1.36929 * 120.62967 * 233.63442 * 13 12 11 15 15 H 1.08007 * 119.99930 * 151.84946 * 14 13 12 16 16 C 1.38810 * 120.00094 * 331.84410 * 14 13 12 17 17 N 1.31614 * 120.00279 * 343.06062 * 16 14 13 18 18 Si 1.86803 * 119.99991 * 163.05535 * 16 14 13 19 19 H 1.48501 * 109.47231 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47035 * 120.00189 * 18 16 14 21 21 H 1.48495 * 109.47460 * 240.00415 * 18 16 14 22 22 C 1.46922 * 118.73501 * 53.61059 * 13 12 11 23 23 C 1.53042 * 109.46388 * 205.02604 * 9 8 6 24 24 C 1.53001 * 109.49624 * 298.56972 * 23 9 8 25 25 C 1.53004 * 109.49333 * 58.66319 * 23 9 8 26 26 N 1.33284 * 118.96191 * 0.49145 * 5 4 3 27 27 C 1.31530 * 120.88710 * 359.74727 * 26 5 4 28 28 N 1.31895 * 121.98670 * 0.02562 * 27 26 5 29 29 H 1.08999 * 109.47505 * 59.99338 * 1 2 3 30 30 H 1.08995 * 109.47021 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46864 * 299.99351 * 1 2 3 32 32 H 1.08003 * 120.89793 * 0.02562 * 4 3 2 33 33 H 0.97001 * 119.99970 * 359.97438 * 8 6 5 34 34 H 1.08993 * 109.49351 * 301.33870 * 11 9 8 35 35 H 1.09004 * 109.49256 * 61.40200 * 11 9 8 36 36 H 1.09001 * 109.58822 * 65.15198 * 12 11 9 37 37 H 1.08999 * 109.58589 * 185.43932 * 12 11 9 38 38 H 0.97002 * 120.00236 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.58996 * 66.17746 * 22 13 12 40 40 H 1.09000 * 109.58584 * 186.46176 * 22 13 12 41 41 H 1.09002 * 109.46821 * 60.00027 * 24 23 9 42 42 H 1.09004 * 109.46833 * 179.97438 * 24 23 9 43 43 H 1.08992 * 109.47436 * 299.99922 * 24 23 9 44 44 H 1.09007 * 109.46927 * 60.00345 * 25 23 9 45 45 H 1.08994 * 109.46811 * 179.97438 * 25 23 9 46 46 H 1.09001 * 109.47193 * 300.00312 * 25 23 9 47 47 H 1.07995 * 119.00670 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4380 1.2925 0.0058 5 6 4.0198 2.5565 0.0010 6 6 5.4967 2.7065 0.0014 7 8 6.2073 1.7213 0.0014 8 7 6.0490 3.9359 0.0019 9 6 7.5065 4.0841 0.0030 10 1 7.9525 3.2832 0.5926 11 6 8.0275 4.0099 -1.4342 12 6 9.5547 4.1304 -1.4263 13 7 9.9285 5.3586 -0.7115 14 6 10.7471 6.2859 -1.2988 15 1 10.6690 7.3272 -1.0227 16 6 11.6774 5.8878 -2.2490 17 7 12.0126 4.6191 -2.3507 18 14 12.4535 7.1526 -3.3837 19 1 11.9120 8.4989 -3.0682 20 1 13.9258 7.1539 -3.1900 21 1 12.1401 6.8107 -4.7943 22 6 9.4067 5.5729 0.6451 23 6 7.8812 5.4364 0.6137 24 6 7.2848 6.5622 -0.2335 25 6 7.3315 5.5228 2.0390 26 7 3.2304 3.6303 0.0010 27 6 1.9210 3.5058 0.0006 28 7 1.3314 2.3260 0.0006 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 4.0480 0.4012 0.0100 33 1 5.4815 4.7226 0.0016 34 1 7.7401 3.0562 -1.8766 35 1 7.6007 4.8253 -2.0184 36 1 9.9867 3.2672 -0.9202 37 1 9.9230 4.1753 -2.4512 38 1 12.6624 4.3408 -3.0149 39 1 9.8267 4.8272 1.3202 40 1 9.6793 6.5710 0.9880 41 1 6.1996 6.4628 -0.2576 42 1 7.5515 7.5251 0.2022 43 1 7.6779 6.5007 -1.2482 44 1 7.7581 4.7212 2.6421 45 1 7.5990 6.4858 2.4737 46 1 6.2464 5.4226 2.0166 47 1 1.3102 4.3965 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940751972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:21 Heat of formation + Delta-G solvation = 0.851976 kcal Electronic energy + Delta-G solvation = -29435.928382 eV Core-core repulsion = 25427.230255 eV Total energy + Delta-G solvation = -4008.698128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.66538 -40.01933 -38.87935 -38.03264 -34.69062 -33.78770 -33.00565 -32.14538 -31.34826 -29.90101 -28.09173 -26.88788 -26.04494 -25.68766 -24.60889 -24.29326 -22.30297 -20.86125 -20.60842 -19.29125 -18.59655 -17.90339 -16.86176 -16.66690 -16.28268 -15.99401 -15.74787 -15.27509 -15.10985 -14.82369 -14.61011 -14.22341 -14.13998 -13.93801 -13.66749 -13.48527 -13.03648 -12.77143 -12.49967 -12.29017 -12.08274 -11.73307 -11.48490 -11.34086 -11.21913 -10.99588 -10.90495 -10.71154 -10.70043 -10.59013 -10.44134 -10.32900 -10.12478 -9.94419 -9.80009 -9.70058 -9.55135 -9.42933 -8.72315 -8.40855 -6.65996 -5.77474 -3.20183 0.21948 0.64932 2.35061 2.68912 3.09632 3.37956 3.46085 3.47714 3.56938 3.62397 3.73975 4.45071 4.49961 4.63937 4.78227 4.84092 4.94407 5.08259 5.15250 5.23773 5.26182 5.35801 5.44741 5.58717 5.71140 5.86257 5.89039 5.98210 6.10850 6.17622 6.28881 6.29486 6.34204 6.42213 6.55120 6.55589 6.64905 6.67845 6.80818 6.82726 6.91356 7.01229 7.38042 7.49561 7.67841 7.71223 7.81460 8.21306 8.45853 9.22043 9.85421 10.42139 11.31004 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023292 B = 0.002567 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.818284 B =10904.107055 C =11274.173888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.297 6.297 3 C 0.363 3.637 4 C -0.186 4.186 5 C 0.164 3.836 6 C 0.564 3.436 7 O -0.522 6.522 8 N -0.692 5.692 9 C 0.160 3.840 10 H 0.084 0.916 11 C -0.151 4.151 12 C 0.174 3.826 13 N -0.589 5.589 14 C -0.250 4.250 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.900 3.100 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.160 3.840 23 C -0.088 4.088 24 C -0.132 4.132 25 C -0.138 4.138 26 N -0.519 5.519 27 C 0.335 3.665 28 N -0.568 5.568 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.166 0.834 33 H 0.407 0.593 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.020 0.980 37 H 0.090 0.910 38 H 0.253 0.747 39 H 0.020 0.980 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.050 0.950 43 H 0.075 0.925 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.048 0.952 47 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.078 -3.791 6.186 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.201 6.201 3 C 0.175 3.825 4 C -0.210 4.210 5 C 0.020 3.980 6 C 0.346 3.654 7 O -0.397 6.397 8 N -0.343 5.343 9 C 0.057 3.943 10 H 0.102 0.898 11 C -0.191 4.191 12 C 0.048 3.952 13 N -0.310 5.310 14 C -0.380 4.380 15 H 0.084 0.916 16 C -0.196 4.196 17 N -0.545 5.545 18 Si 0.730 3.270 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.216 1.216 22 C 0.032 3.968 23 C -0.091 4.091 24 C -0.190 4.190 25 C -0.196 4.196 26 N -0.240 5.240 27 C 0.046 3.954 28 N -0.299 5.299 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.184 0.816 33 H 0.244 0.756 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -22.809 -4.080 6.074 23.954 hybrid contribution 0.189 0.261 -0.644 0.721 sum -22.620 -3.818 5.429 23.574 Atomic orbital electron populations 1.23008 0.76272 1.03653 1.02892 1.86273 1.23657 1.23607 1.86538 1.20041 0.89249 0.85169 0.88047 1.21950 0.92662 1.00806 1.05547 1.21632 0.95409 0.88512 0.92473 1.17680 0.84922 0.84575 0.78249 1.90826 1.61142 1.38079 1.49625 1.46217 1.09185 1.07343 1.71520 1.21160 0.76944 0.97856 0.98291 0.89786 1.22657 1.01172 1.00645 0.94596 1.20753 0.87236 0.87763 0.99486 1.44054 1.54772 1.21485 1.10728 1.19184 1.11198 0.88495 1.19103 0.91614 1.25051 0.96883 0.96017 1.01693 1.70038 1.34001 1.14677 1.35794 0.86261 0.78770 0.81042 0.80905 1.20281 1.21803 1.21631 1.20914 0.88505 0.99123 0.88242 1.21360 0.99631 0.93779 0.94281 1.21801 0.98020 0.97288 1.01847 1.21822 1.00058 1.01532 0.96169 1.68389 1.06589 1.33030 1.15954 1.24702 0.88061 0.93820 0.88788 1.68046 1.42028 0.99334 1.20464 0.91796 0.87996 0.91814 0.81601 0.75566 0.92840 0.91994 0.96138 0.89189 0.93666 0.96227 0.92277 0.94477 0.93050 0.90595 0.92962 0.92619 0.93294 0.77734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.41 101.05 1.05 1.28 16 2 O -0.30 -2.88 10.49 -18.20 -0.19 -3.07 16 3 C 0.36 3.95 7.54 -16.68 -0.13 3.82 16 4 C -0.19 -2.22 9.68 -38.72 -0.37 -2.60 16 5 C 0.16 2.12 6.79 -82.69 -0.56 1.56 16 6 C 0.56 8.66 7.79 -12.05 -0.09 8.57 16 7 O -0.52 -9.60 16.08 5.39 0.09 -9.51 16 8 N -0.69 -10.15 4.28 -54.52 -0.23 -10.38 16 9 C 0.16 2.75 1.57 -67.88 -0.11 2.64 16 10 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 11 C -0.15 -2.94 5.31 -26.61 -0.14 -3.08 16 12 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 13 N -0.59 -14.14 2.43 -172.32 -0.42 -14.56 16 14 C -0.25 -6.63 9.58 -15.06 -0.14 -6.77 16 15 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 16 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 17 N -0.90 -25.97 11.19 55.49 0.62 -25.34 16 18 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 C 0.16 3.20 5.20 -3.71 -0.02 3.18 16 23 C -0.09 -1.43 0.56 -154.39 -0.09 -1.51 16 24 C -0.13 -2.05 7.83 37.16 0.29 -1.76 16 25 C -0.14 -1.87 8.31 37.16 0.31 -1.56 16 26 N -0.52 -5.81 9.70 -11.20 -0.11 -5.92 16 27 C 0.33 3.03 12.27 -92.29 -1.13 1.90 16 28 N -0.57 -5.64 9.36 -14.65 -0.14 -5.78 16 29 H 0.06 0.38 8.12 -51.93 -0.42 -0.04 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.37 8.12 -51.93 -0.42 -0.05 16 32 H 0.17 1.95 7.73 -52.48 -0.41 1.54 16 33 H 0.41 5.33 6.04 -40.82 -0.25 5.08 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.20 6.34 -51.93 -0.33 0.87 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 2.40 6.06 -51.93 -0.31 2.08 16 38 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 41 H 0.04 0.48 6.58 -51.93 -0.34 0.14 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.38 5.97 -51.93 -0.31 1.07 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.60 7.36 -51.93 -0.38 0.22 16 47 H 0.21 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -30.95 376.57 -7.88 -38.83 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.91 Total: 3.90 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -1.24 Total: 9.74 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.28 Total: -61.98 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.10 Total: -12.58 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.95 -7.88 -38.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940751972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.683 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds