Wall clock time and date at job start Tue Mar 31 2020 19:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35503 * 116.99765 * 2 1 4 4 C 1.39644 * 120.49053 * 179.72264 * 3 2 1 5 5 C 1.39149 * 118.20932 * 179.78573 * 4 3 2 6 6 C 1.48445 * 120.51958 * 180.23920 * 5 4 3 7 7 O 1.21475 * 120.00244 * 0.25792 * 6 5 4 8 8 N 1.34781 * 119.99700 * 180.25534 * 6 5 4 9 9 C 1.46498 * 119.99779 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.46273 * 325.00281 * 9 8 6 11 11 C 1.53052 * 109.45833 * 84.97467 * 9 8 6 12 12 C 1.53189 * 109.31231 * 181.38684 * 11 9 8 13 13 N 1.46936 * 108.77547 * 305.36299 * 12 11 9 14 14 C 1.36929 * 120.62967 * 233.63442 * 13 12 11 15 15 H 1.08007 * 119.99930 * 151.84946 * 14 13 12 16 16 C 1.38810 * 120.00094 * 331.84410 * 14 13 12 17 17 N 1.31614 * 120.00279 * 343.06062 * 16 14 13 18 18 Si 1.86803 * 119.99991 * 163.05535 * 16 14 13 19 19 H 1.48501 * 109.47231 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47035 * 120.00189 * 18 16 14 21 21 H 1.48495 * 109.47460 * 240.00415 * 18 16 14 22 22 C 1.46922 * 118.73501 * 53.61059 * 13 12 11 23 23 C 1.53042 * 109.46388 * 205.02604 * 9 8 6 24 24 C 1.53001 * 109.49624 * 298.56972 * 23 9 8 25 25 C 1.53004 * 109.49333 * 58.66319 * 23 9 8 26 26 N 1.33284 * 118.96191 * 0.49145 * 5 4 3 27 27 C 1.31530 * 120.88710 * 359.74727 * 26 5 4 28 28 N 1.31895 * 121.98670 * 0.02562 * 27 26 5 29 29 H 1.08999 * 109.47505 * 59.99338 * 1 2 3 30 30 H 1.08995 * 109.47021 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46864 * 299.99351 * 1 2 3 32 32 H 1.08003 * 120.89793 * 0.02562 * 4 3 2 33 33 H 0.97001 * 119.99970 * 359.97438 * 8 6 5 34 34 H 1.08993 * 109.49351 * 301.33870 * 11 9 8 35 35 H 1.09004 * 109.49256 * 61.40200 * 11 9 8 36 36 H 1.09001 * 109.58822 * 65.15198 * 12 11 9 37 37 H 1.08999 * 109.58589 * 185.43932 * 12 11 9 38 38 H 0.97002 * 120.00236 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.58996 * 66.17746 * 22 13 12 40 40 H 1.09000 * 109.58584 * 186.46176 * 22 13 12 41 41 H 1.09002 * 109.46821 * 60.00027 * 24 23 9 42 42 H 1.09004 * 109.46833 * 179.97438 * 24 23 9 43 43 H 1.08992 * 109.47436 * 299.99922 * 24 23 9 44 44 H 1.09007 * 109.46927 * 60.00345 * 25 23 9 45 45 H 1.08994 * 109.46811 * 179.97438 * 25 23 9 46 46 H 1.09001 * 109.47193 * 300.00312 * 25 23 9 47 47 H 1.07995 * 119.00670 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4380 1.2925 0.0058 5 6 4.0198 2.5565 0.0010 6 6 5.4967 2.7065 0.0014 7 8 6.2073 1.7213 0.0014 8 7 6.0490 3.9359 0.0019 9 6 7.5065 4.0841 0.0030 10 1 7.9525 3.2832 0.5926 11 6 8.0275 4.0099 -1.4342 12 6 9.5547 4.1304 -1.4263 13 7 9.9285 5.3586 -0.7115 14 6 10.7471 6.2859 -1.2988 15 1 10.6690 7.3272 -1.0227 16 6 11.6774 5.8878 -2.2490 17 7 12.0126 4.6191 -2.3507 18 14 12.4535 7.1526 -3.3837 19 1 11.9120 8.4989 -3.0682 20 1 13.9258 7.1539 -3.1900 21 1 12.1401 6.8107 -4.7943 22 6 9.4067 5.5729 0.6451 23 6 7.8812 5.4364 0.6137 24 6 7.2848 6.5622 -0.2335 25 6 7.3315 5.5228 2.0390 26 7 3.2304 3.6303 0.0010 27 6 1.9210 3.5058 0.0006 28 7 1.3314 2.3260 0.0006 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 4.0480 0.4012 0.0100 33 1 5.4815 4.7226 0.0016 34 1 7.7401 3.0562 -1.8766 35 1 7.6007 4.8253 -2.0184 36 1 9.9867 3.2672 -0.9202 37 1 9.9230 4.1753 -2.4512 38 1 12.6624 4.3408 -3.0149 39 1 9.8267 4.8272 1.3202 40 1 9.6793 6.5710 0.9880 41 1 6.1996 6.4628 -0.2576 42 1 7.5515 7.5251 0.2022 43 1 7.6779 6.5007 -1.2482 44 1 7.7581 4.7212 2.6421 45 1 7.5990 6.4858 2.4737 46 1 6.2464 5.4226 2.0166 47 1 1.3102 4.3965 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940751972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:20 Heat of formation + Delta-G solvation = -19.857718 kcal Electronic energy + Delta-G solvation = -29436.826422 eV Core-core repulsion = 25427.230255 eV Total energy + Delta-G solvation = -4009.596167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.52156 -41.30364 -39.84156 -39.27176 -36.38893 -34.86718 -34.25558 -33.18506 -32.97183 -31.62227 -28.74099 -28.12258 -27.45233 -27.27362 -25.66150 -25.37814 -23.83121 -22.45976 -21.94832 -20.39148 -19.42794 -19.24558 -18.68750 -17.48375 -17.37851 -17.18119 -16.75109 -16.60155 -16.29338 -16.02068 -15.77899 -15.61043 -15.36209 -15.16118 -15.01672 -14.83310 -14.73660 -14.30338 -13.85054 -13.14060 -13.09939 -12.99706 -12.82050 -12.74395 -12.70461 -12.53933 -12.30754 -12.26034 -12.08785 -12.02380 -11.93740 -11.67600 -11.54912 -11.49608 -11.35757 -11.11984 -10.64706 -10.55086 -10.35329 -10.05202 -8.66222 -7.84495 -5.29769 -0.71187 -0.14788 1.47463 1.49912 1.53738 1.59686 1.59980 2.04116 2.53228 2.66927 2.79494 2.95221 3.31452 3.53630 3.65267 3.70699 3.75840 3.96595 4.03638 4.06996 4.38614 4.39452 4.39751 4.44891 4.46614 4.62019 4.70247 4.71074 4.83780 4.86335 4.93757 4.99693 5.02180 5.06213 5.14388 5.22909 5.30117 5.37646 5.43410 5.47724 5.54593 5.64456 5.68098 5.75435 5.92460 6.38247 6.41220 6.80223 7.02324 7.16250 7.87165 8.40362 9.22611 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023292 B = 0.002567 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.818284 B =10904.107055 C =11274.173888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.308 6.308 3 C 0.365 3.635 4 C -0.197 4.197 5 C 0.156 3.844 6 C 0.564 3.436 7 O -0.559 6.559 8 N -0.679 5.679 9 C 0.172 3.828 10 H 0.061 0.939 11 C -0.135 4.135 12 C 0.184 3.816 13 N -0.601 5.601 14 C -0.250 4.250 15 H 0.073 0.927 16 C -0.055 4.055 17 N -0.938 5.938 18 Si 0.965 3.035 19 H -0.262 1.262 20 H -0.296 1.296 21 H -0.294 1.294 22 C 0.155 3.845 23 C -0.077 4.077 24 C -0.126 4.126 25 C -0.131 4.131 26 N -0.523 5.523 27 C 0.341 3.659 28 N -0.563 5.563 29 H 0.066 0.934 30 H 0.127 0.873 31 H 0.068 0.932 32 H 0.159 0.841 33 H 0.419 0.581 34 H 0.046 0.954 35 H 0.068 0.932 36 H -0.011 1.011 37 H 0.056 0.944 38 H 0.248 0.752 39 H 0.008 0.992 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.430 -1.921 7.033 27.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.211 6.211 3 C 0.176 3.824 4 C -0.221 4.221 5 C 0.012 3.988 6 C 0.348 3.652 7 O -0.436 6.436 8 N -0.331 5.331 9 C 0.068 3.932 10 H 0.080 0.920 11 C -0.175 4.175 12 C 0.057 3.943 13 N -0.324 5.324 14 C -0.380 4.380 15 H 0.091 0.909 16 C -0.250 4.250 17 N -0.585 5.585 18 Si 0.793 3.207 19 H -0.186 1.186 20 H -0.223 1.223 21 H -0.221 1.221 22 C 0.029 3.971 23 C -0.079 4.079 24 C -0.184 4.184 25 C -0.189 4.189 26 N -0.244 5.244 27 C 0.054 3.946 28 N -0.295 5.295 29 H 0.085 0.915 30 H 0.145 0.855 31 H 0.087 0.913 32 H 0.177 0.823 33 H 0.258 0.742 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.007 0.993 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.026 0.974 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -26.223 -2.177 6.949 27.215 hybrid contribution 1.128 -0.379 -0.860 1.468 sum -25.096 -2.556 6.089 25.950 Atomic orbital electron populations 1.23299 0.74282 1.05531 1.03230 1.86271 1.25623 1.23158 1.86080 1.20071 0.88914 0.85916 0.87500 1.21923 0.93499 1.00360 1.06344 1.21155 0.93946 0.89490 0.94186 1.18038 0.86117 0.83968 0.77064 1.90810 1.62474 1.39227 1.51107 1.45926 1.07904 1.07841 1.71383 1.20790 0.78440 0.97943 0.96037 0.92043 1.22399 0.97988 1.00430 0.96701 1.20445 0.89844 0.86862 0.97105 1.44237 1.54816 1.20919 1.12417 1.19532 1.10603 0.89214 1.18680 0.90945 1.25815 0.98028 0.97638 1.03496 1.70204 1.35059 1.16634 1.36598 0.85241 0.77391 0.79484 0.78544 1.18631 1.22322 1.22095 1.21093 0.91127 0.99012 0.85867 1.21196 0.96748 0.93402 0.96588 1.21733 0.99681 0.97184 0.99771 1.21765 1.01056 1.02370 0.93667 1.68396 1.07450 1.32114 1.16470 1.25580 0.87552 0.94804 0.86713 1.68173 1.41710 0.99330 1.20258 0.91481 0.85493 0.91342 0.82312 0.74156 0.93555 0.91320 0.99278 0.92524 0.94306 0.97379 0.91605 0.91493 0.91975 0.93508 0.93442 0.90928 0.91328 0.73558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.41 113.37 1.18 1.48 16 2 O -0.31 -5.49 10.49 -88.05 -0.92 -6.42 16 3 C 0.36 7.34 7.54 84.91 0.64 7.98 16 4 C -0.20 -4.60 9.68 22.83 0.22 -4.38 16 5 C 0.16 3.84 6.79 41.87 0.28 4.13 16 6 C 0.56 17.14 7.79 86.96 0.68 17.81 16 7 O -0.56 -21.11 16.08 -3.64 -0.06 -21.17 16 8 N -0.68 -19.06 4.28 -444.69 -1.90 -20.96 16 9 C 0.17 5.89 1.57 45.02 0.07 5.96 16 10 H 0.06 2.42 7.58 -2.39 -0.02 2.40 16 11 C -0.14 -5.43 5.31 30.67 0.16 -5.26 16 12 C 0.18 9.21 5.30 86.36 0.46 9.67 16 13 N -0.60 -29.61 2.43 -699.09 -1.70 -31.31 16 14 C -0.25 -13.41 9.58 84.03 0.81 -12.60 16 15 H 0.07 3.73 7.89 -2.91 -0.02 3.71 16 16 C -0.05 -3.06 4.92 84.86 0.42 -2.64 16 17 N -0.94 -56.42 11.19 21.65 0.24 -56.18 16 18 Si 0.96 44.87 29.59 68.60 2.03 46.90 16 19 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 22 C 0.16 6.20 5.20 86.36 0.45 6.65 16 23 C -0.08 -2.39 0.56 -52.10 -0.03 -2.42 16 24 C -0.13 -3.59 7.83 71.98 0.56 -3.03 16 25 C -0.13 -3.17 8.31 71.98 0.60 -2.58 16 26 N -0.52 -10.28 9.70 -189.35 -1.84 -12.12 16 27 C 0.34 4.97 12.27 180.93 2.22 7.19 16 28 N -0.56 -9.61 9.36 -313.01 -2.93 -12.55 16 29 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 30 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.63 8.12 -2.39 -0.02 0.61 16 32 H 0.16 3.84 7.73 -2.91 -0.02 3.82 16 33 H 0.42 9.79 6.04 -92.71 -0.56 9.23 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 2.67 6.34 -2.39 -0.02 2.65 16 36 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H 0.06 3.20 6.06 -2.39 -0.01 3.19 16 38 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 39 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.07 2.52 7.93 -2.39 -0.02 2.50 16 41 H 0.07 1.50 6.58 -2.39 -0.02 1.48 16 42 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.05 1.62 5.97 -2.39 -0.01 1.61 16 44 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 45 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.07 1.43 7.36 -2.39 -0.02 1.41 16 47 H 0.25 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -70.13 376.57 2.07 -68.06 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.43 Total: 17.79 kcal Atomic # 6 Polarization: 19.24 SS G_CDS: 8.72 Total: 27.96 kcal Atomic # 7 Polarization: -124.99 SS G_CDS: -8.13 Total: -133.12 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.98 Total: -27.59 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -70.13 2.07 -68.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940751972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.204 kcal (2) G-P(sol) polarization free energy of solvation -70.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds