Wall clock time and date at job start Tue Mar 31 2020 19:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.49454 * 2 1 4 4 C 1.52758 * 109.56365 * 240.03425 * 2 1 3 5 5 N 1.46928 * 109.00696 * 185.55200 * 4 2 1 6 6 C 1.36940 * 120.62942 * 233.58139 * 5 4 2 7 7 H 1.07997 * 119.99487 * 152.22685 * 6 5 4 8 8 C 1.38809 * 120.00020 * 332.22646 * 6 5 4 9 9 N 1.31625 * 120.00314 * 335.02519 * 8 6 5 10 10 Si 1.86803 * 119.99831 * 155.01934 * 8 6 5 11 11 H 1.48499 * 109.47125 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46931 * 120.00189 * 10 8 6 13 13 H 1.48494 * 109.47227 * 239.99903 * 10 8 6 14 14 C 1.46920 * 118.73646 * 53.31210 * 5 4 2 15 15 C 1.53187 * 108.77436 * 306.63846 * 14 5 4 16 16 C 1.53035 * 109.49646 * 120.06937 * 2 1 3 17 17 H 1.08996 * 109.46355 * 61.29677 * 16 2 1 18 18 N 1.46504 * 109.44720 * 301.32827 * 16 2 1 19 19 C 1.34783 * 119.99600 * 154.94205 * 18 16 2 20 20 O 1.21563 * 120.00359 * 359.97438 * 19 18 16 21 21 C 1.47718 * 119.99477 * 179.97438 * 19 18 16 22 22 C 1.40949 * 125.97088 * 179.71120 * 21 19 18 23 23 C 1.36174 * 107.94899 * 179.97438 * 22 21 19 24 24 N 1.35801 * 107.31552 * 359.97438 * 23 22 21 25 25 N 1.31843 * 125.97942 * 0.02573 * 21 19 18 26 26 C 1.47430 * 108.06813 * 180.48541 * 24 23 22 27 27 C 1.54642 * 102.35405 * 15.28085 * 26 24 23 28 28 O 1.36121 * 140.87115 * 179.27276 * 23 22 21 29 29 H 1.08993 * 109.46867 * 299.93150 * 1 2 3 30 30 H 1.09000 * 109.47068 * 59.93004 * 1 2 3 31 31 H 1.08999 * 109.46973 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46732 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47690 * 300.06465 * 3 2 1 34 34 H 1.09004 * 109.47144 * 60.06788 * 3 2 1 35 35 H 1.09007 * 109.51083 * 65.67088 * 4 2 1 36 36 H 1.08998 * 109.43404 * 305.38690 * 4 2 1 37 37 H 0.96998 * 119.99686 * 354.25090 * 9 8 6 38 38 H 1.08996 * 109.59199 * 66.42825 * 14 5 4 39 39 H 1.09010 * 109.58411 * 186.71583 * 14 5 4 40 40 H 1.09009 * 109.49772 * 174.58793 * 15 14 5 41 41 H 1.09000 * 109.50241 * 294.65145 * 15 14 5 42 42 H 0.97002 * 120.00309 * 334.94028 * 18 16 2 43 43 H 1.07994 * 126.02640 * 0.14722 * 22 21 19 44 44 H 1.09005 * 110.83009 * 133.50095 * 26 24 23 45 45 H 1.09002 * 110.82951 * 257.06348 * 26 24 23 46 46 H 1.09001 * 110.85484 * 93.34580 * 27 26 24 47 47 H 1.08999 * 110.85315 * 216.77503 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0416 -0.7190 -1.2470 5 7 3.5047 -0.8293 -1.1694 6 6 4.2937 -0.3789 -2.1940 7 1 5.2998 -0.0420 -1.9927 8 6 3.8002 -0.3555 -3.4912 9 7 2.8306 -1.1738 -3.8415 10 14 4.5123 0.8375 -4.7399 11 1 5.5841 1.6421 -4.1005 12 1 5.0793 0.0777 -5.8829 13 1 3.4398 1.7406 -5.2292 14 6 4.1053 -1.4267 0.0310 15 6 3.5709 -0.6947 1.2661 16 6 2.0408 -0.7228 1.2485 17 1 1.6968 -1.7570 1.2357 18 7 1.5265 -0.0521 2.4451 19 6 1.3972 -0.7373 3.5986 20 8 1.7069 -1.9118 3.6459 21 6 0.8792 -0.0608 4.8052 22 6 0.6881 -0.6542 6.0693 23 6 0.1978 0.2981 6.9102 24 7 0.0865 1.4484 6.1971 25 7 0.5093 1.2021 4.8867 26 6 -0.4326 2.4953 7.0960 27 6 -0.2183 1.8679 8.4931 28 8 -0.2147 0.4591 8.1974 29 1 -0.3633 0.5127 0.8905 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1307 1.4418 -0.0005 33 1 1.6766 1.9567 -0.8894 34 1 1.6785 1.9559 0.8906 35 1 1.7646 -0.1500 -2.1346 36 1 1.6022 -1.7152 -1.2971 37 1 2.5177 -1.8493 -3.2196 38 1 3.8376 -2.4817 0.0873 39 1 5.1898 -1.3268 -0.0147 40 1 3.9335 -1.1892 2.1673 41 1 3.9165 0.3390 1.2543 42 1 1.2791 0.8851 2.4073 43 1 0.8965 -1.6822 6.3265 44 1 0.1424 3.4156 6.9920 45 1 -1.4914 2.6756 6.9103 46 1 0.7375 2.1780 8.9153 47 1 -1.0383 2.1247 9.1637 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940800915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:41 Heat of formation + Delta-G solvation = 54.443901 kcal Electronic energy + Delta-G solvation = -29662.034463 eV Core-core repulsion = 25655.660256 eV Total energy + Delta-G solvation = -4006.374207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.63483 -40.16012 -38.96653 -37.88704 -34.79212 -33.69400 -32.94378 -32.11188 -30.41084 -29.26285 -29.00644 -26.81786 -26.12607 -25.51626 -24.20800 -23.04307 -21.92555 -21.61518 -20.69916 -19.97676 -18.49316 -17.87353 -17.46403 -17.15276 -16.67999 -16.04669 -15.76279 -15.29014 -15.12064 -14.55201 -14.49232 -14.23403 -13.91984 -13.67997 -13.61300 -13.56203 -13.27148 -13.18652 -12.79500 -12.63489 -12.41669 -11.86068 -11.75687 -11.49551 -11.45063 -11.23712 -10.92580 -10.89525 -10.64611 -10.40127 -10.31402 -10.08324 -10.04794 -9.98568 -9.74777 -9.54719 -9.23143 -8.84970 -8.72316 -8.32651 -6.84520 -6.03330 -3.18975 1.06968 1.46940 1.83842 2.38273 3.25230 3.35705 3.47005 3.52848 3.55224 3.68626 4.02286 4.12254 4.42469 4.55722 4.61662 4.70774 4.91870 4.98549 5.13507 5.18349 5.26506 5.39230 5.46289 5.56663 5.60140 5.80844 5.89008 5.99538 6.06129 6.09215 6.15303 6.24957 6.35009 6.39806 6.43291 6.48030 6.60125 6.61777 6.76640 6.83894 6.86296 6.92962 7.10459 7.12619 7.20128 7.67747 8.05006 8.25857 8.61177 9.15190 9.88161 10.32933 11.25384 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027497 B = 0.002549 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.034625 B =10981.139205 C =11289.320661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 C -0.129 4.129 4 C 0.165 3.835 5 N -0.596 5.596 6 C -0.345 4.345 7 H 0.056 0.944 8 C -0.024 4.024 9 N -0.917 5.917 10 Si 1.066 2.934 11 H -0.293 1.293 12 H -0.295 1.295 13 H -0.291 1.291 14 C 0.150 3.850 15 C -0.144 4.144 16 C 0.163 3.837 17 H 0.084 0.916 18 N -0.702 5.702 19 C 0.598 3.402 20 O -0.523 6.523 21 C 0.060 3.940 22 C -0.213 4.213 23 C 0.231 3.769 24 N -0.414 5.414 25 N -0.219 5.219 26 C 0.098 3.902 27 C 0.041 3.959 28 O -0.279 6.279 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.033 0.967 35 H 0.085 0.915 36 H 0.018 0.982 37 H 0.270 0.730 38 H 0.019 0.981 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.403 0.597 43 H 0.166 0.834 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.095 0.905 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.256 9.079 23.870 26.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.093 4.093 3 C -0.186 4.186 4 C 0.039 3.961 5 N -0.319 5.319 6 C -0.474 4.474 7 H 0.074 0.926 8 C -0.226 4.226 9 N -0.558 5.558 10 Si 0.896 3.104 11 H -0.219 1.219 12 H -0.222 1.222 13 H -0.217 1.217 14 C 0.023 3.977 15 C -0.184 4.184 16 C 0.060 3.940 17 H 0.103 0.897 18 N -0.353 5.353 19 C 0.380 3.620 20 O -0.397 6.397 21 C -0.107 4.107 22 C -0.242 4.242 23 C 0.064 3.936 24 N -0.211 5.211 25 N -0.049 5.049 26 C -0.023 4.023 27 C -0.035 4.035 28 O -0.186 6.186 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.104 0.896 36 H 0.036 0.964 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.240 0.760 43 H 0.184 0.816 44 H 0.131 0.869 45 H 0.124 0.876 46 H 0.113 0.887 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.368 9.868 21.836 25.381 hybrid contribution 0.019 -0.536 2.233 2.296 sum -8.349 9.332 24.069 27.131 Atomic orbital electron populations 1.21804 0.95129 1.01499 1.01079 1.21355 0.94623 0.96933 0.96401 1.21768 1.02735 0.94423 0.99701 1.20915 0.84157 0.96538 0.94532 1.44116 1.01064 1.69756 1.17003 1.19988 0.99038 1.40702 0.87641 0.92619 1.25779 0.99690 1.00914 0.96215 1.70718 1.30722 1.16787 1.37548 0.83519 0.75358 0.75958 0.75536 1.21886 1.22195 1.21744 1.20864 0.96843 0.94060 0.85938 1.22457 0.94508 1.01863 0.99567 1.21075 0.94024 0.96826 0.82115 0.89747 1.46212 1.64506 1.14824 1.09758 1.16791 0.78242 0.85731 0.81260 1.90821 1.49973 1.14982 1.83883 1.22128 1.01744 0.91290 0.95525 1.20081 1.13126 1.00803 0.90231 1.20756 0.98846 0.90791 0.83213 1.50672 1.52318 1.10294 1.07861 1.77687 1.19152 1.15860 0.92205 1.23257 1.01923 0.91422 0.85704 1.24452 1.05474 0.77614 0.95935 1.87144 1.82446 1.25669 1.23307 0.93461 0.92412 0.92943 0.90942 0.92735 0.94835 0.89628 0.96394 0.91915 0.96312 0.92371 0.92460 0.91624 0.76050 0.81646 0.86880 0.87630 0.88737 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.31 37.16 0.31 -1.87 16 2 C -0.09 -1.63 0.56 -154.61 -0.09 -1.72 16 3 C -0.13 -2.24 7.82 37.16 0.29 -1.95 16 4 C 0.17 3.74 3.33 -3.93 -0.01 3.73 16 5 N -0.60 -14.52 2.30 -172.59 -0.40 -14.91 16 6 C -0.34 -9.38 9.49 -15.06 -0.14 -9.52 16 7 H 0.06 1.54 7.94 -52.49 -0.42 1.12 16 8 C -0.02 -0.67 4.68 -17.43 -0.08 -0.75 16 9 N -0.92 -27.11 12.41 55.49 0.69 -26.42 16 10 Si 1.07 25.12 29.99 -169.99 -5.10 20.03 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.15 3.21 6.52 -3.72 -0.02 3.18 16 15 C -0.14 -2.65 5.31 -26.61 -0.14 -2.79 16 16 C 0.16 2.87 1.57 -67.89 -0.11 2.76 16 17 H 0.08 1.64 7.57 -51.93 -0.39 1.25 16 18 N -0.70 -10.82 4.29 -54.75 -0.23 -11.06 16 19 C 0.60 9.68 7.79 -12.38 -0.10 9.59 16 20 O -0.52 -9.92 16.56 5.31 0.09 -9.83 16 21 C 0.06 0.87 7.09 -82.96 -0.59 0.28 16 22 C -0.21 -2.78 10.60 -39.30 -0.42 -3.19 16 23 C 0.23 2.59 8.32 -16.54 -0.14 2.45 16 24 N -0.41 -4.38 5.01 -59.63 -0.30 -4.68 16 25 N -0.22 -2.91 12.39 33.32 0.41 -2.50 16 26 C 0.10 0.47 8.10 -2.67 -0.02 0.44 16 27 C 0.04 0.14 8.08 38.02 0.31 0.45 16 28 O -0.28 -2.41 11.19 -20.12 -0.23 -2.63 16 29 H 0.05 0.67 7.36 -51.93 -0.38 0.29 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.40 5.98 -51.92 -0.31 1.09 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.03 0.49 6.58 -51.93 -0.34 0.14 16 35 H 0.09 2.18 6.30 -51.93 -0.33 1.85 16 36 H 0.02 0.43 7.87 -51.93 -0.41 0.02 16 37 H 0.27 8.06 6.71 -40.82 -0.27 7.79 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 1.24 7.93 -51.92 -0.41 0.83 16 40 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 41 H 0.07 1.21 6.34 -51.93 -0.33 0.88 16 42 H 0.40 5.69 6.35 -40.82 -0.26 5.43 16 43 H 0.17 2.02 8.06 -52.49 -0.42 1.59 16 44 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.13 0.01 8.14 -51.93 -0.42 -0.41 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -33.65 371.28 -7.30 -40.94 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.88 Total: 4.39 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -0.95 Total: 1.09 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.17 Total: -59.57 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.14 Total: -12.47 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.10 Total: 20.03 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.65 -7.30 -40.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940800915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.385 kcal (2) G-P(sol) polarization free energy of solvation -33.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds