Wall clock time and date at job start Tue Mar 31 2020 19:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.52652 * 2 1 4 4 C 1.53626 * 109.63188 * 239.91701 * 2 1 3 5 5 N 1.46932 * 108.54116 * 294.86245 * 4 2 1 6 6 C 1.36938 * 120.62754 * 126.37023 * 5 4 2 7 7 H 1.08004 * 119.99730 * 331.48387 * 6 5 4 8 8 C 1.38804 * 119.99905 * 151.48095 * 6 5 4 9 9 N 1.31627 * 120.00019 * 160.49235 * 8 6 5 10 10 Si 1.86797 * 120.00226 * 340.48765 * 8 6 5 11 11 H 1.48509 * 109.46954 * 95.15574 * 10 8 6 12 12 H 1.48497 * 109.47514 * 215.15800 * 10 8 6 13 13 H 1.48498 * 109.47259 * 335.15869 * 10 8 6 14 14 C 1.46922 * 118.73875 * 306.09790 * 5 4 2 15 15 C 1.53187 * 108.77666 * 53.86117 * 14 5 4 16 16 C 1.53038 * 109.49545 * 120.08219 * 2 1 3 17 17 H 1.09004 * 109.45941 * 178.60888 * 16 2 1 18 18 N 1.46499 * 109.46137 * 298.56226 * 16 2 1 19 19 C 1.34783 * 120.00076 * 205.07118 * 18 16 2 20 20 O 1.21565 * 119.99787 * 359.97438 * 19 18 16 21 21 C 1.47717 * 120.00014 * 180.02562 * 19 18 16 22 22 C 1.40939 * 125.97741 * 179.71141 * 21 19 18 23 23 C 1.36168 * 107.95495 * 179.97438 * 22 21 19 24 24 N 1.35805 * 107.31407 * 359.97438 * 23 22 21 25 25 N 1.31846 * 125.97266 * 0.02562 * 21 19 18 26 26 C 1.47422 * 108.06963 * 180.48208 * 24 23 22 27 27 C 1.54653 * 102.35132 * 15.28956 * 26 24 23 28 28 O 1.36126 * 140.87505 * 179.27851 * 23 22 21 29 29 H 1.09002 * 109.47270 * 299.92104 * 1 2 3 30 30 H 1.08997 * 109.47051 * 59.91644 * 1 2 3 31 31 H 1.09000 * 109.47535 * 179.91665 * 1 2 3 32 32 H 1.09003 * 109.47216 * 180.08275 * 3 2 1 33 33 H 1.09002 * 109.47025 * 300.08137 * 3 2 1 34 34 H 1.09002 * 109.47123 * 60.08253 * 3 2 1 35 35 H 1.08999 * 109.73720 * 175.12782 * 4 2 1 36 36 H 1.08999 * 109.66758 * 54.55665 * 4 2 1 37 37 H 0.97000 * 119.99842 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.58243 * 173.65094 * 14 5 4 39 39 H 1.09002 * 109.58752 * 293.92437 * 14 5 4 40 40 H 1.08999 * 109.49979 * 65.31386 * 15 14 5 41 41 H 1.09005 * 109.49604 * 185.38225 * 15 14 5 42 42 H 0.97001 * 119.99909 * 25.06832 * 18 16 2 43 43 H 1.08002 * 126.01906 * 0.14781 * 22 21 19 44 44 H 1.09002 * 110.82634 * 133.49957 * 26 24 23 45 45 H 1.09000 * 110.83276 * 256.87464 * 26 24 23 46 46 H 1.09000 * 110.84929 * 93.34008 * 27 26 24 47 47 H 1.09003 * 110.84849 * 216.97292 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0461 -0.7253 -1.2521 5 7 1.6514 -2.1382 -1.1696 6 6 0.9638 -2.7315 -2.1944 7 1 0.3187 -2.1388 -2.8262 8 6 1.0958 -4.0944 -2.4214 9 7 0.1845 -4.7364 -3.1213 10 14 2.5669 -5.0176 -1.7337 11 1 2.2011 -5.6328 -0.4324 12 1 2.9739 -6.0810 -2.6869 13 1 3.6953 -4.0730 -1.5347 14 6 2.0139 -2.9040 0.0308 15 6 1.5029 -2.1558 1.2660 16 6 2.0407 -0.7231 1.2483 17 1 3.1305 -0.7444 1.2353 18 7 1.5810 -0.0144 2.4453 19 6 2.2705 -0.1217 3.5984 20 8 3.2736 -0.8069 3.6453 21 6 1.8067 0.5924 4.8054 22 6 2.4241 0.5650 6.0721 23 6 1.6938 1.3494 6.9121 24 7 0.6550 1.8513 6.1955 25 7 0.7396 1.3623 4.8877 26 6 -0.1413 2.7138 7.0873 27 6 0.8187 2.9324 8.2799 28 8 1.6661 1.7713 8.2060 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3634 -1.0276 -0.0015 32 1 3.1314 1.4410 -0.0015 33 1 1.6773 1.9566 -0.8893 34 1 1.6797 1.9558 0.8907 35 1 3.1326 -0.6515 -1.2985 36 1 1.6088 -0.2752 -2.1432 37 1 0.2766 -5.6890 -3.2795 38 1 1.5553 -3.8918 -0.0138 39 1 3.0977 -3.0065 0.0854 40 1 0.4132 -2.1354 1.2540 41 1 1.8475 -2.6632 2.1671 42 1 0.7805 0.5320 2.4079 43 1 3.3202 0.0203 6.3303 44 1 -0.3775 3.6605 6.6014 45 1 -1.0515 2.2061 7.4064 46 1 1.3993 3.8455 8.1483 47 1 0.2695 2.9527 9.2213 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940800916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:44 Heat of formation + Delta-G solvation = 62.707011 kcal Electronic energy + Delta-G solvation = -29662.987868 eV Core-core repulsion = 25656.971976 eV Total energy + Delta-G solvation = -4006.015892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.64840 -40.21277 -39.00820 -37.93643 -34.82249 -33.70771 -33.16685 -31.72151 -30.71158 -29.78841 -29.18208 -26.93086 -26.38533 -25.64662 -24.23151 -23.01685 -21.95228 -21.65678 -21.13314 -20.01867 -18.59192 -17.95258 -17.33013 -16.76183 -16.69339 -16.11350 -15.80395 -15.46062 -15.06824 -14.88686 -14.46300 -14.32528 -14.21045 -13.86396 -13.76616 -13.61994 -13.20018 -13.17096 -12.80647 -12.72258 -12.34197 -12.03208 -11.78010 -11.74769 -11.61788 -11.28130 -11.26375 -11.18283 -10.80113 -10.50987 -10.36634 -10.23290 -10.00928 -9.89510 -9.66300 -9.56641 -9.44658 -8.86287 -8.76650 -8.56503 -6.92090 -5.91027 -3.28121 1.05175 1.45513 1.82096 2.37115 3.20807 3.33497 3.39149 3.45558 3.54358 3.57932 4.01145 4.10639 4.40694 4.54201 4.57868 4.69979 4.90530 4.92143 4.97207 5.04271 5.24878 5.25659 5.28680 5.45186 5.58184 5.74731 5.75596 5.86530 5.94596 6.04719 6.07019 6.12661 6.23395 6.27939 6.35236 6.43626 6.46852 6.49993 6.65128 6.67483 6.72314 6.76786 6.80799 7.04026 7.09736 7.63187 8.00374 8.22303 8.36624 8.97490 9.75988 10.13783 11.24773 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023066 B = 0.002744 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.638211 B =10203.483180 C =10671.910763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 C -0.138 4.138 4 C 0.163 3.837 5 N -0.603 5.603 6 C -0.257 4.257 7 H 0.086 0.914 8 C 0.024 3.976 9 N -0.910 5.910 10 Si 0.881 3.119 11 H -0.289 1.289 12 H -0.304 1.304 13 H -0.268 1.268 14 C 0.129 3.871 15 C -0.145 4.145 16 C 0.162 3.838 17 H 0.086 0.914 18 N -0.703 5.703 19 C 0.598 3.402 20 O -0.522 6.522 21 C 0.060 3.940 22 C -0.213 4.213 23 C 0.232 3.768 24 N -0.414 5.414 25 N -0.219 5.219 26 C 0.098 3.902 27 C 0.042 3.958 28 O -0.279 6.279 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.026 0.974 36 H 0.068 0.932 37 H 0.262 0.738 38 H 0.073 0.927 39 H 0.029 0.971 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.404 0.596 43 H 0.166 0.834 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.095 0.905 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.515 19.021 22.086 29.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.092 4.092 3 C -0.196 4.196 4 C 0.036 3.964 5 N -0.326 5.326 6 C -0.385 4.385 7 H 0.103 0.897 8 C -0.175 4.175 9 N -0.553 5.553 10 Si 0.712 3.288 11 H -0.217 1.217 12 H -0.233 1.233 13 H -0.193 1.193 14 C 0.003 3.997 15 C -0.185 4.185 16 C 0.059 3.941 17 H 0.104 0.896 18 N -0.354 5.354 19 C 0.381 3.619 20 O -0.395 6.395 21 C -0.107 4.107 22 C -0.242 4.242 23 C 0.064 3.936 24 N -0.211 5.211 25 N -0.049 5.049 26 C -0.023 4.023 27 C -0.034 4.034 28 O -0.186 6.186 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.240 0.760 43 H 0.184 0.816 44 H 0.131 0.869 45 H 0.124 0.876 46 H 0.113 0.887 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.847 18.842 21.556 28.642 hybrid contribution 0.779 -0.507 0.991 1.358 sum -0.068 18.335 22.547 29.061 Atomic orbital electron populations 1.21800 0.93974 1.03345 0.99916 1.21432 0.96851 0.94785 0.96110 1.21815 1.00865 0.95617 1.01274 1.21041 0.96369 0.84823 0.94190 1.44364 1.65614 1.06782 1.15878 1.18887 1.19087 0.92379 1.08167 0.89678 1.25293 0.97791 0.96791 0.97651 1.69827 1.33359 1.08891 1.43220 0.86964 0.85453 0.79360 0.77055 1.21669 1.23286 1.19265 1.21313 0.97277 0.95573 0.85523 1.22479 1.01804 0.94839 0.99427 1.21066 0.99522 0.91443 0.82096 0.89571 1.46178 1.29457 1.49997 1.09749 1.16782 0.83408 0.80511 0.81246 1.90828 1.25071 1.39782 1.83848 1.22105 0.94137 0.98971 0.95492 1.20079 1.05142 1.09674 0.89341 1.20757 0.91864 0.98324 0.82638 1.50670 1.22339 1.39936 1.08182 1.77680 1.19536 1.15447 0.92226 1.23258 0.95381 0.95761 0.87918 1.24460 0.90693 0.88664 0.99621 1.87150 1.67560 1.43990 1.19866 0.94489 0.92778 0.90440 0.92837 0.92447 0.93213 0.95622 0.91328 0.92834 0.90850 0.95320 0.91052 0.92214 0.75994 0.81648 0.86908 0.87601 0.88715 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 7.84 37.16 0.29 -1.78 16 2 C -0.09 -1.40 0.56 -154.17 -0.09 -1.49 16 3 C -0.14 -1.80 8.31 37.16 0.31 -1.49 16 4 C 0.16 3.10 5.24 -3.48 -0.02 3.09 16 5 N -0.60 -13.98 2.19 -172.06 -0.38 -14.36 16 6 C -0.26 -7.02 10.04 -15.06 -0.15 -7.17 16 7 H 0.09 2.47 8.06 -52.48 -0.42 2.05 16 8 C 0.02 0.68 5.24 -17.43 -0.09 0.59 16 9 N -0.91 -27.87 13.97 55.49 0.78 -27.09 16 10 Si 0.88 22.70 24.35 -169.99 -4.14 18.56 16 11 H -0.29 -7.29 6.73 56.52 0.38 -6.91 16 12 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 13 H -0.27 -6.78 6.41 56.52 0.36 -6.41 16 14 C 0.13 2.87 4.19 -3.72 -0.02 2.86 16 15 C -0.15 -2.73 5.31 -26.61 -0.14 -2.87 16 16 C 0.16 2.68 1.57 -67.89 -0.11 2.58 16 17 H 0.09 1.55 7.57 -51.93 -0.39 1.16 16 18 N -0.70 -10.24 4.29 -54.75 -0.23 -10.48 16 19 C 0.60 9.37 7.79 -12.38 -0.10 9.27 16 20 O -0.52 -9.67 16.56 5.31 0.09 -9.58 16 21 C 0.06 0.84 7.09 -82.97 -0.59 0.25 16 22 C -0.21 -2.72 10.60 -39.30 -0.42 -3.13 16 23 C 0.23 2.54 8.32 -16.54 -0.14 2.40 16 24 N -0.41 -4.25 5.01 -59.63 -0.30 -4.55 16 25 N -0.22 -2.81 12.39 33.31 0.41 -2.40 16 26 C 0.10 0.44 8.10 -2.67 -0.02 0.42 16 27 C 0.04 0.13 8.08 38.03 0.31 0.44 16 28 O -0.28 -2.36 11.19 -20.14 -0.23 -2.59 16 29 H 0.04 0.49 6.58 -51.93 -0.34 0.15 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.43 5.97 -51.93 -0.31 1.12 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.60 7.36 -51.93 -0.38 0.22 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.07 1.79 4.59 -51.93 -0.24 1.55 16 39 H 0.03 0.65 6.93 -51.93 -0.36 0.29 16 40 H 0.07 1.34 6.34 -51.93 -0.33 1.02 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.40 5.30 6.36 -40.82 -0.26 5.04 16 43 H 0.17 1.98 8.06 -52.49 -0.42 1.56 16 44 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.13 0.00 8.14 -51.93 -0.42 -0.43 16 LS Contribution 365.80 15.07 5.51 5.51 Total: -1.00 -34.48 365.80 -6.32 -40.80 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.87 Total: 2.20 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -0.96 Total: 3.96 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.28 Total: -58.87 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.14 Total: -12.17 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.14 Total: 18.56 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.48 -6.32 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940800916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.511 kcal (2) G-P(sol) polarization free energy of solvation -34.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds