Wall clock time and date at job start Tue Mar 31 2020 19:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.52652 * 2 1 4 4 C 1.53626 * 109.63188 * 239.91701 * 2 1 3 5 5 N 1.46932 * 108.54116 * 294.86245 * 4 2 1 6 6 C 1.36938 * 120.62754 * 126.37023 * 5 4 2 7 7 H 1.08004 * 119.99730 * 331.48387 * 6 5 4 8 8 C 1.38804 * 119.99905 * 151.48095 * 6 5 4 9 9 N 1.31627 * 120.00019 * 160.49235 * 8 6 5 10 10 Si 1.86797 * 120.00226 * 340.48765 * 8 6 5 11 11 H 1.48509 * 109.46954 * 95.15574 * 10 8 6 12 12 H 1.48497 * 109.47514 * 215.15800 * 10 8 6 13 13 H 1.48498 * 109.47259 * 335.15869 * 10 8 6 14 14 C 1.46922 * 118.73875 * 306.09790 * 5 4 2 15 15 C 1.53187 * 108.77666 * 53.86117 * 14 5 4 16 16 C 1.53038 * 109.49545 * 120.08219 * 2 1 3 17 17 H 1.09004 * 109.45941 * 178.60888 * 16 2 1 18 18 N 1.46499 * 109.46137 * 298.56226 * 16 2 1 19 19 C 1.34783 * 120.00076 * 205.07118 * 18 16 2 20 20 O 1.21565 * 119.99787 * 359.97438 * 19 18 16 21 21 C 1.47717 * 120.00014 * 180.02562 * 19 18 16 22 22 C 1.40939 * 125.97741 * 179.71141 * 21 19 18 23 23 C 1.36168 * 107.95495 * 179.97438 * 22 21 19 24 24 N 1.35805 * 107.31407 * 359.97438 * 23 22 21 25 25 N 1.31846 * 125.97266 * 0.02562 * 21 19 18 26 26 C 1.47422 * 108.06963 * 180.48208 * 24 23 22 27 27 C 1.54653 * 102.35132 * 15.28956 * 26 24 23 28 28 O 1.36126 * 140.87505 * 179.27851 * 23 22 21 29 29 H 1.09002 * 109.47270 * 299.92104 * 1 2 3 30 30 H 1.08997 * 109.47051 * 59.91644 * 1 2 3 31 31 H 1.09000 * 109.47535 * 179.91665 * 1 2 3 32 32 H 1.09003 * 109.47216 * 180.08275 * 3 2 1 33 33 H 1.09002 * 109.47025 * 300.08137 * 3 2 1 34 34 H 1.09002 * 109.47123 * 60.08253 * 3 2 1 35 35 H 1.08999 * 109.73720 * 175.12782 * 4 2 1 36 36 H 1.08999 * 109.66758 * 54.55665 * 4 2 1 37 37 H 0.97000 * 119.99842 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.58243 * 173.65094 * 14 5 4 39 39 H 1.09002 * 109.58752 * 293.92437 * 14 5 4 40 40 H 1.08999 * 109.49979 * 65.31386 * 15 14 5 41 41 H 1.09005 * 109.49604 * 185.38225 * 15 14 5 42 42 H 0.97001 * 119.99909 * 25.06832 * 18 16 2 43 43 H 1.08002 * 126.01906 * 0.14781 * 22 21 19 44 44 H 1.09002 * 110.82634 * 133.49957 * 26 24 23 45 45 H 1.09000 * 110.83276 * 256.87464 * 26 24 23 46 46 H 1.09000 * 110.84929 * 93.34008 * 27 26 24 47 47 H 1.09003 * 110.84849 * 216.97292 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0461 -0.7253 -1.2521 5 7 1.6514 -2.1382 -1.1696 6 6 0.9638 -2.7315 -2.1944 7 1 0.3187 -2.1388 -2.8262 8 6 1.0958 -4.0944 -2.4214 9 7 0.1845 -4.7364 -3.1213 10 14 2.5669 -5.0176 -1.7337 11 1 2.2011 -5.6328 -0.4324 12 1 2.9739 -6.0810 -2.6869 13 1 3.6953 -4.0730 -1.5347 14 6 2.0139 -2.9040 0.0308 15 6 1.5029 -2.1558 1.2660 16 6 2.0407 -0.7231 1.2483 17 1 3.1305 -0.7444 1.2353 18 7 1.5810 -0.0144 2.4453 19 6 2.2705 -0.1217 3.5984 20 8 3.2736 -0.8069 3.6453 21 6 1.8067 0.5924 4.8054 22 6 2.4241 0.5650 6.0721 23 6 1.6938 1.3494 6.9121 24 7 0.6550 1.8513 6.1955 25 7 0.7396 1.3623 4.8877 26 6 -0.1413 2.7138 7.0873 27 6 0.8187 2.9324 8.2799 28 8 1.6661 1.7713 8.2060 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3634 -1.0276 -0.0015 32 1 3.1314 1.4410 -0.0015 33 1 1.6773 1.9566 -0.8893 34 1 1.6797 1.9558 0.8907 35 1 3.1326 -0.6515 -1.2985 36 1 1.6088 -0.2752 -2.1432 37 1 0.2766 -5.6890 -3.2795 38 1 1.5553 -3.8918 -0.0138 39 1 3.0977 -3.0065 0.0854 40 1 0.4132 -2.1354 1.2540 41 1 1.8475 -2.6632 2.1671 42 1 0.7805 0.5320 2.4079 43 1 3.3202 0.0203 6.3303 44 1 -0.3775 3.6605 6.6014 45 1 -1.0515 2.2061 7.4064 46 1 1.3993 3.8455 8.1483 47 1 0.2695 2.9527 9.2213 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940800916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:43 Heat of formation + Delta-G solvation = 36.351754 kcal Electronic energy + Delta-G solvation = -29664.130718 eV Core-core repulsion = 25656.971976 eV Total energy + Delta-G solvation = -4007.158742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.38395 -41.47933 -40.03194 -39.10556 -36.49773 -34.63201 -34.26940 -33.65218 -32.10951 -30.85956 -29.92628 -28.17897 -27.87750 -27.10338 -25.28078 -24.00987 -23.22885 -22.89746 -22.47961 -21.18014 -19.78819 -18.92615 -18.66097 -18.08960 -17.57573 -17.37790 -16.82361 -16.62623 -16.28983 -16.02142 -15.95928 -15.56488 -15.38698 -15.19741 -14.96645 -14.81670 -14.33445 -14.30636 -13.99449 -13.97325 -13.86894 -13.31550 -13.13825 -13.01191 -12.75239 -12.66085 -12.43982 -12.26862 -12.17028 -12.13596 -12.02258 -11.87149 -11.53545 -11.44607 -11.41039 -11.15272 -10.71419 -10.35580 -10.04689 -9.69696 -8.89817 -8.14188 -5.46040 0.10690 0.78613 0.92030 1.31287 1.41654 1.49936 1.66446 2.16713 2.24523 2.42947 3.00992 3.07353 3.33436 3.38156 3.62190 3.79577 3.84347 3.85443 3.99500 4.10428 4.23841 4.24164 4.33486 4.43766 4.46560 4.47986 4.50837 4.62973 4.71899 4.75203 4.77755 4.86493 4.90617 4.92500 5.02494 5.09299 5.15946 5.17046 5.22292 5.28384 5.38382 5.43615 5.65168 5.75729 5.90111 6.16318 6.21078 6.49929 6.92863 7.03287 7.64005 8.05935 9.05457 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023066 B = 0.002744 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.638211 B =10203.483180 C =10671.910763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.079 4.079 3 C -0.131 4.131 4 C 0.157 3.843 5 N -0.613 5.613 6 C -0.235 4.235 7 H 0.061 0.939 8 C -0.032 4.032 9 N -0.956 5.956 10 Si 0.936 3.064 11 H -0.284 1.284 12 H -0.312 1.312 13 H -0.260 1.260 14 C 0.127 3.873 15 C -0.136 4.136 16 C 0.171 3.829 17 H 0.076 0.924 18 N -0.691 5.691 19 C 0.601 3.399 20 O -0.556 6.556 21 C 0.043 3.957 22 C -0.240 4.240 23 C 0.240 3.760 24 N -0.408 5.408 25 N -0.229 5.229 26 C 0.086 3.914 27 C 0.040 3.960 28 O -0.290 6.290 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.260 0.740 38 H 0.050 0.950 39 H 0.029 0.971 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.413 0.587 43 H 0.162 0.838 44 H 0.138 0.862 45 H 0.124 0.876 46 H 0.112 0.888 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.752 22.187 24.870 33.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.081 4.081 3 C -0.189 4.189 4 C 0.031 3.969 5 N -0.336 5.336 6 C -0.364 4.364 7 H 0.078 0.922 8 C -0.227 4.227 9 N -0.603 5.603 10 Si 0.766 3.234 11 H -0.211 1.211 12 H -0.241 1.241 13 H -0.185 1.185 14 C 0.001 3.999 15 C -0.176 4.176 16 C 0.067 3.933 17 H 0.094 0.906 18 N -0.342 5.342 19 C 0.385 3.615 20 O -0.433 6.433 21 C -0.122 4.122 22 C -0.270 4.270 23 C 0.071 3.929 24 N -0.207 5.207 25 N -0.060 5.060 26 C -0.032 4.032 27 C -0.034 4.034 28 O -0.197 6.197 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.047 0.953 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.252 0.748 43 H 0.179 0.821 44 H 0.156 0.844 45 H 0.142 0.858 46 H 0.130 0.870 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.091 22.080 24.391 32.919 hybrid contribution 0.746 -1.306 0.276 1.529 sum -0.345 20.775 24.666 32.251 Atomic orbital electron populations 1.21732 0.93641 1.01629 1.01514 1.21284 0.96945 0.96120 0.93756 1.21757 1.01042 0.93309 1.02746 1.21258 0.96893 0.82631 0.96096 1.44439 1.65554 1.08385 1.15270 1.18845 1.17698 0.92035 1.07853 0.92176 1.25828 0.99903 0.97922 0.99044 1.69939 1.35198 1.09066 1.46071 0.86060 0.82814 0.78144 0.76350 1.21113 1.24123 1.18451 1.21266 0.97027 0.94972 0.86591 1.22320 1.01591 0.96138 0.97537 1.20804 0.98796 0.90377 0.83336 0.90608 1.45932 1.29643 1.49669 1.08941 1.16995 0.82789 0.79931 0.81778 1.90803 1.26598 1.41352 1.84501 1.21712 0.95264 1.00218 0.95050 1.20130 1.05938 1.11093 0.89817 1.20700 0.91401 0.97269 0.83518 1.51093 1.22658 1.39545 1.07390 1.77544 1.19011 1.15456 0.94015 1.23848 0.95758 0.96270 0.87344 1.24955 0.90182 0.87455 1.00843 1.87163 1.68539 1.45853 1.18160 0.91776 0.92333 0.93747 0.92580 0.91078 0.91653 0.94857 0.91360 0.93120 0.93207 0.95333 0.91205 0.92211 0.74849 0.82073 0.84415 0.85770 0.86961 0.81350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 7.84 71.98 0.56 -3.20 16 2 C -0.08 -2.35 0.56 -51.96 -0.03 -2.38 16 3 C -0.13 -3.02 8.31 71.98 0.60 -2.42 16 4 C 0.16 5.84 5.24 86.51 0.45 6.29 16 5 N -0.61 -28.49 2.19 -698.26 -1.53 -30.02 16 6 C -0.23 -13.10 10.04 84.03 0.84 -12.26 16 7 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 8 C -0.03 -1.91 5.24 84.86 0.45 -1.46 16 9 N -0.96 -60.48 13.97 21.65 0.30 -60.18 16 10 Si 0.94 48.08 24.35 68.60 1.67 49.75 16 11 H -0.28 -14.17 6.73 99.48 0.67 -13.50 16 12 H -0.31 -16.29 7.11 99.48 0.71 -15.58 16 13 H -0.26 -12.85 6.41 99.48 0.64 -12.21 16 14 C 0.13 5.67 4.19 86.36 0.36 6.03 16 15 C -0.14 -5.07 5.31 30.67 0.16 -4.90 16 16 C 0.17 5.48 1.57 45.02 0.07 5.55 16 17 H 0.08 2.65 7.57 -2.38 -0.02 2.63 16 18 N -0.69 -19.16 4.29 -445.40 -1.91 -21.06 16 19 C 0.60 18.48 7.79 86.75 0.68 19.16 16 20 O -0.56 -20.72 16.56 -3.92 -0.06 -20.78 16 21 C 0.04 1.17 7.09 42.31 0.30 1.47 16 22 C -0.24 -6.03 10.60 22.45 0.24 -5.79 16 23 C 0.24 4.83 8.32 83.60 0.70 5.52 16 24 N -0.41 -7.29 5.01 -453.33 -2.27 -9.56 16 25 N -0.23 -5.44 12.39 -48.51 -0.60 -6.04 16 26 C 0.09 0.43 8.10 86.77 0.70 1.13 16 27 C 0.04 0.09 8.08 72.55 0.59 0.67 16 28 O -0.29 -4.11 11.19 -94.99 -1.06 -5.17 16 29 H 0.06 1.52 6.58 -2.39 -0.02 1.51 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.04 1.61 5.97 -2.39 -0.01 1.60 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 1.34 7.36 -2.39 -0.02 1.32 16 35 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 2.54 7.93 -2.39 -0.02 2.52 16 37 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 38 H 0.05 2.45 4.59 -2.39 -0.01 2.44 16 39 H 0.03 1.28 6.93 -2.39 -0.02 1.26 16 40 H 0.07 2.63 6.34 -2.39 -0.02 2.61 16 41 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 42 H 0.41 9.93 6.36 -92.71 -0.59 9.34 16 43 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 44 H 0.14 0.04 8.14 -2.39 -0.02 0.02 16 45 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 46 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 47 H 0.17 -0.90 8.14 -2.39 -0.02 -0.92 16 Total: -1.00 -77.75 365.80 1.51 -76.24 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.31 Total: 13.42 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 6.67 Total: 13.41 kcal Atomic # 7 Polarization: -120.86 SS G_CDS: -6.01 Total: -126.87 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -1.13 Total: -25.95 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 1.67 Total: 49.75 kcal Total: -77.75 1.51 -76.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940800916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.595 kcal (2) G-P(sol) polarization free energy of solvation -77.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds