Wall clock time and date at job start Tue Mar 31 2020 19:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34782 * 119.89418 * 2 1 4 4 N 1.30427 * 121.82477 * 179.69641 * 3 2 1 5 5 C 1.34317 * 121.48060 * 0.28215 * 4 3 2 6 6 C 1.48558 * 120.21398 * 180.02562 * 5 4 3 7 7 O 1.21462 * 120.00358 * 180.02562 * 6 5 4 8 8 N 1.34771 * 120.00049 * 359.97438 * 6 5 4 9 9 C 1.46500 * 120.00608 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.45986 * 325.00376 * 9 8 6 11 11 C 1.53043 * 109.46261 * 84.97359 * 9 8 6 12 12 C 1.53188 * 109.31332 * 181.38757 * 11 9 8 13 13 N 1.46917 * 108.77865 * 305.36599 * 12 11 9 14 14 C 1.36936 * 120.63533 * 233.63333 * 13 12 11 15 15 H 1.07996 * 120.00889 * 151.84509 * 14 13 12 16 16 C 1.38822 * 119.99568 * 331.84760 * 14 13 12 17 17 N 1.31615 * 119.99644 * 343.05322 * 16 14 13 18 18 Si 1.86796 * 120.00060 * 163.05386 * 16 14 13 19 19 H 1.48506 * 109.46998 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47265 * 119.99793 * 18 16 14 21 21 H 1.48497 * 109.47099 * 239.99997 * 18 16 14 22 22 C 1.46929 * 118.74078 * 53.60900 * 13 12 11 23 23 C 1.53047 * 109.46271 * 205.03235 * 9 8 6 24 24 C 1.53000 * 109.49413 * 298.56223 * 23 9 8 25 25 C 1.52998 * 109.49826 * 58.66236 * 23 9 8 26 26 C 1.37921 * 119.58026 * 359.97438 * 5 4 3 27 27 C 1.34989 * 119.89676 * 180.25361 * 2 1 3 28 28 O 1.21901 * 120.71011 * 359.97438 * 27 2 1 29 29 H 1.08994 * 109.47319 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46930 * 120.00318 * 1 2 3 31 31 H 1.09003 * 109.47511 * 239.99847 * 1 2 3 32 32 H 1.07997 * 119.08466 * 359.97438 * 3 2 1 33 33 H 0.97010 * 120.00102 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.49418 * 301.34268 * 11 9 8 35 35 H 1.08997 * 109.49528 * 61.39951 * 11 9 8 36 36 H 1.08999 * 109.58637 * 65.15773 * 12 11 9 37 37 H 1.09000 * 109.58486 * 185.43180 * 12 11 9 38 38 H 0.97007 * 119.99889 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.58424 * 66.17908 * 22 13 12 40 40 H 1.08999 * 109.58959 * 186.46289 * 22 13 12 41 41 H 1.09001 * 109.47190 * 60.00015 * 24 23 9 42 42 H 1.09002 * 109.46573 * 180.02562 * 24 23 9 43 43 H 1.09001 * 109.47382 * 300.00262 * 24 23 9 44 44 H 1.08994 * 109.47094 * 59.99803 * 25 23 9 45 45 H 1.08996 * 109.46897 * 180.02562 * 25 23 9 46 46 H 1.09008 * 109.46933 * 299.99795 * 25 23 9 47 47 H 1.08000 * 120.83742 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1367 1.1685 0.0000 4 7 3.4402 1.2124 0.0059 5 6 4.1798 0.0912 0.0066 6 6 5.6631 0.1741 0.0139 7 8 6.3282 -0.8422 0.0141 8 7 6.2708 1.3770 0.0194 9 6 7.7335 1.4589 0.0260 10 1 8.1405 0.6372 0.6154 11 6 8.2560 1.3644 -1.4093 12 6 9.7870 1.4155 -1.3955 13 7 10.2134 2.6236 -0.6765 14 6 11.0756 3.5142 -1.2584 15 1 11.0438 4.5572 -0.9801 16 6 11.9904 3.0764 -2.2063 17 7 12.2680 1.7940 -2.3097 18 14 12.8274 4.3072 -3.3349 19 1 12.3465 5.6760 -3.0180 20 1 14.2975 4.2413 -3.1358 21 1 12.5041 3.9830 -4.7475 22 6 9.6969 2.8584 0.6788 23 6 8.1668 2.7914 0.6416 24 6 7.6253 3.9450 -0.2051 25 6 7.6164 2.8994 2.0650 26 6 3.5535 -1.1375 0.0016 27 6 2.1378 -1.1702 -0.0052 28 8 1.5395 -2.2323 -0.0094 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 -0.3634 -0.5139 0.8900 32 1 1.5801 2.0940 -0.0004 33 1 5.7396 2.1888 0.0189 34 1 7.9272 0.4256 -1.8551 35 1 7.8688 2.1995 -1.9931 36 1 10.1775 0.5323 -0.8900 37 1 10.1608 1.4457 -2.4190 38 1 12.9070 1.4879 -2.9723 39 1 10.0801 2.0929 1.3536 40 1 10.0132 3.8423 1.0251 41 1 6.5368 3.8951 -0.2335 42 1 7.9346 4.8938 0.2335 43 1 8.0191 3.8680 -1.2185 44 1 8.0038 2.0780 2.6676 45 1 7.9249 3.8487 2.5028 46 1 6.5278 2.8487 2.0384 47 1 4.1283 -2.0519 0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940811293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:45 Heat of formation + Delta-G solvation = -1.857293 kcal Electronic energy + Delta-G solvation = -29599.968948 eV Core-core repulsion = 25591.153338 eV Total energy + Delta-G solvation = -4008.815610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.14552 -40.05450 -38.36139 -37.79344 -35.60362 -34.65778 -33.10669 -31.42167 -31.32604 -30.01200 -28.57271 -26.88950 -25.92456 -25.58445 -24.91016 -24.14151 -22.24070 -20.76573 -20.53071 -19.05997 -18.51567 -17.73051 -17.30731 -16.85003 -16.69667 -16.05635 -15.73150 -14.95300 -14.83103 -14.73522 -14.38113 -14.05479 -13.80643 -13.72006 -13.66687 -13.41204 -13.31593 -13.24498 -12.99517 -12.74672 -12.26908 -11.73708 -11.48458 -11.34379 -10.99936 -10.93389 -10.87540 -10.81756 -10.66299 -10.61948 -10.58205 -10.39389 -10.13251 -9.99047 -9.91495 -9.70671 -9.43205 -8.94292 -8.69042 -8.40197 -6.65736 -5.77325 -3.20070 -0.03359 1.27446 1.95488 2.63547 3.05889 3.37814 3.45821 3.47483 3.47735 3.54424 4.04899 4.12321 4.49770 4.49957 4.68106 4.84926 4.98792 5.06242 5.13182 5.26370 5.34035 5.36021 5.44793 5.59342 5.79473 5.86732 5.90143 5.97739 6.08774 6.11457 6.17343 6.29013 6.33422 6.42473 6.54858 6.56107 6.68357 6.80989 6.82699 6.91949 7.01253 7.18881 7.34881 7.38721 7.67206 7.71429 7.81477 8.25816 8.45996 9.22190 9.85603 10.42381 11.31104 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022762 B = 0.002635 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.807935 B =10621.781641 C =10902.855024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.525 5.525 3 C 0.372 3.628 4 N -0.524 5.524 5 C 0.133 3.867 6 C 0.562 3.438 7 O -0.522 6.522 8 N -0.694 5.694 9 C 0.160 3.840 10 H 0.083 0.917 11 C -0.150 4.150 12 C 0.174 3.826 13 N -0.588 5.588 14 C -0.251 4.251 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.900 5.900 18 Si 0.900 3.100 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.159 3.841 23 C -0.088 4.088 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.214 4.214 27 C 0.517 3.483 28 O -0.527 6.527 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.210 0.790 33 H 0.406 0.594 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.020 0.980 37 H 0.090 0.910 38 H 0.253 0.747 39 H 0.020 0.980 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.050 0.950 43 H 0.075 0.925 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.199 2.607 6.103 25.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.244 5.244 3 C 0.087 3.913 4 N -0.248 5.248 5 C 0.012 3.988 6 C 0.344 3.656 7 O -0.398 6.398 8 N -0.345 5.345 9 C 0.057 3.943 10 H 0.101 0.899 11 C -0.190 4.190 12 C 0.048 3.952 13 N -0.310 5.310 14 C -0.380 4.380 15 H 0.084 0.916 16 C -0.196 4.196 17 N -0.545 5.545 18 Si 0.730 3.270 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.216 1.216 22 C 0.032 3.968 23 C -0.091 4.091 24 C -0.189 4.189 25 C -0.195 4.195 26 C -0.241 4.241 27 C 0.316 3.684 28 O -0.404 6.404 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.226 0.774 33 H 0.243 0.757 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -23.378 1.743 5.994 24.197 hybrid contribution -0.276 0.247 -0.648 0.746 sum -23.654 1.990 5.346 24.332 Atomic orbital electron populations 1.22220 0.76188 1.04616 1.05069 1.46726 1.10829 1.08247 1.58613 1.24972 0.89125 0.89851 0.87373 1.68282 1.04107 1.29901 1.22468 1.21605 0.95143 0.88930 0.93119 1.17803 0.85001 0.84660 0.78110 1.90823 1.64345 1.35012 1.49605 1.46218 1.08773 1.07679 1.71823 1.21140 0.76805 0.98122 0.98224 0.89869 1.22647 1.01065 1.00662 0.94655 1.20744 0.86978 0.88095 0.99401 1.44048 1.51668 1.24479 1.10829 1.19184 1.10299 0.89203 1.19344 0.91623 1.25055 0.97025 0.95847 1.01709 1.70043 1.35445 1.13123 1.35863 0.86260 0.79008 0.80836 0.80873 1.20285 1.21803 1.21637 1.20916 0.88560 0.99047 0.88266 1.21358 0.99545 0.93892 0.94269 1.21793 0.98163 0.97078 1.01846 1.21814 1.00030 1.01484 0.96201 1.23481 0.92763 1.00766 1.07060 1.17320 0.88699 0.83189 0.79202 1.90960 1.70379 1.28174 1.50869 0.88579 0.89617 0.89619 0.77373 0.75679 0.92873 0.92033 0.96171 0.89225 0.93663 0.96256 0.92306 0.94491 0.93095 0.90621 0.92978 0.92663 0.93301 0.81201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.20 10.13 59.84 0.61 0.80 16 2 N -0.53 -3.69 2.97 -128.43 -0.38 -4.08 16 3 C 0.37 2.07 11.48 -90.67 -1.04 1.03 16 4 N -0.52 -4.89 9.64 -10.83 -0.10 -4.99 16 5 C 0.13 1.66 6.77 -82.64 -0.56 1.10 16 6 C 0.56 8.64 7.79 -12.00 -0.09 8.54 16 7 O -0.52 -9.85 16.03 5.40 0.09 -9.77 16 8 N -0.69 -10.01 4.28 -54.48 -0.23 -10.24 16 9 C 0.16 2.74 1.57 -67.88 -0.11 2.63 16 10 H 0.08 1.61 7.58 -51.93 -0.39 1.21 16 11 C -0.15 -2.93 5.31 -26.61 -0.14 -3.07 16 12 C 0.17 4.14 5.30 -3.72 -0.02 4.12 16 13 N -0.59 -14.11 2.43 -172.32 -0.42 -14.53 16 14 C -0.25 -6.63 9.58 -15.06 -0.14 -6.77 16 15 H 0.07 1.71 7.88 -52.49 -0.41 1.29 16 16 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 17 N -0.90 -25.98 11.19 55.49 0.62 -25.36 16 18 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C 0.16 3.18 5.20 -3.71 -0.02 3.16 16 23 C -0.09 -1.41 0.56 -154.38 -0.09 -1.50 16 24 C -0.13 -1.99 7.83 37.16 0.29 -1.70 16 25 C -0.14 -1.83 8.31 37.16 0.31 -1.52 16 26 C -0.21 -2.72 9.67 -38.41 -0.37 -3.09 16 27 C 0.52 6.03 7.47 -14.88 -0.11 5.92 16 28 O -0.53 -7.75 17.18 5.01 0.09 -7.66 16 29 H 0.10 -0.08 7.71 -51.93 -0.40 -0.48 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.21 0.03 7.79 -52.49 -0.41 -0.38 16 33 H 0.41 5.08 6.03 -40.82 -0.25 4.84 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.18 6.34 -51.93 -0.33 0.85 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 38 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 41 H 0.04 0.46 6.58 -51.93 -0.34 0.12 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 1.36 5.97 -51.93 -0.31 1.05 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.58 7.36 -51.92 -0.38 0.20 16 47 H 0.17 2.30 7.68 -52.49 -0.40 1.90 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -34.46 374.87 -8.17 -42.63 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.87 Total: 2.34 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -1.57 Total: 9.63 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.52 Total: -59.20 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.17 Total: -17.43 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.46 -8.17 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940811293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.774 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds