Wall clock time and date at job start Tue Mar 31 2020 19:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35480 * 116.99818 * 2 1 4 4 N 1.32421 * 119.11389 * 0.02562 * 3 2 1 5 5 C 1.32129 * 120.97363 * 179.97438 * 4 3 2 6 6 C 1.38804 * 119.22241 * 359.71699 * 5 4 3 7 7 C 1.39465 * 118.38527 * 0.53905 * 6 5 4 8 8 C 1.48462 * 120.51852 * 179.73458 * 7 6 5 9 9 O 1.21481 * 119.99636 * 359.72864 * 8 7 6 10 10 N 1.34777 * 120.00283 * 179.72690 * 8 7 6 11 11 C 1.46498 * 120.00084 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46012 * 34.96960 * 11 10 8 13 13 C 1.53045 * 109.45818 * 275.00101 * 11 10 8 14 14 C 1.53189 * 109.31183 * 178.62915 * 13 11 10 15 15 N 1.46933 * 108.77712 * 54.63310 * 14 13 11 16 16 C 1.36936 * 120.62939 * 126.36691 * 15 14 13 17 17 H 1.07995 * 120.00289 * 332.50485 * 16 15 14 18 18 C 1.38817 * 119.99502 * 152.50384 * 16 15 14 19 19 N 1.31612 * 120.00107 * 335.02596 * 18 16 15 20 20 Si 1.86801 * 119.99419 * 155.02751 * 18 16 15 21 21 H 1.48497 * 109.47275 * 90.00269 * 20 18 16 22 22 H 1.48502 * 109.46928 * 209.99622 * 20 18 16 23 23 H 1.48494 * 109.47235 * 329.99781 * 20 18 16 24 24 C 1.46930 * 118.73578 * 306.64412 * 15 14 13 25 25 C 1.52757 * 109.00623 * 53.30912 * 24 15 14 26 26 C 1.53002 * 109.56342 * 185.54745 * 25 24 15 27 27 C 1.53001 * 109.36264 * 65.49898 * 25 24 15 28 28 N 1.32079 * 119.10916 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47410 * 300.00312 * 1 2 3 30 30 H 1.08998 * 109.46670 * 60.00214 * 1 2 3 31 31 H 1.08999 * 109.47068 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.39161 * 179.97438 * 5 4 3 33 33 H 1.07996 * 120.80850 * 180.28088 * 6 5 4 34 34 H 0.97005 * 119.99959 * 0.02562 * 10 8 7 35 35 H 1.08994 * 109.49993 * 58.67374 * 13 11 10 36 36 H 1.09001 * 109.52374 * 298.59667 * 13 11 10 37 37 H 1.09000 * 109.58791 * 294.84911 * 14 13 11 38 38 H 1.09003 * 109.70663 * 174.48983 * 14 13 11 39 39 H 0.96997 * 120.00247 * 354.26122 * 19 18 16 40 40 H 1.09001 * 109.58180 * 173.14154 * 24 15 14 41 41 H 1.08991 * 109.58526 * 293.56754 * 24 15 14 42 42 H 1.08999 * 109.47539 * 179.97438 * 26 25 24 43 43 H 1.08997 * 109.47556 * 299.96818 * 26 25 24 44 44 H 1.09007 * 109.46919 * 59.96544 * 26 25 24 45 45 H 1.09002 * 109.47061 * 300.15618 * 27 25 24 46 46 H 1.09006 * 109.47136 * 60.15349 * 27 25 24 47 47 H 1.08998 * 109.47171 * 180.15460 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2072 0.0000 4 7 1.3057 2.3064 0.0005 5 6 1.8670 3.5026 0.0010 6 6 3.2515 3.6014 0.0070 7 6 4.0002 2.4248 0.0008 8 6 5.4840 2.4754 0.0008 9 8 6.0551 3.5476 0.0014 10 7 6.1973 1.3319 0.0003 11 6 7.6614 1.3818 0.0009 12 1 7.9954 2.2355 0.5907 13 6 8.1673 1.5260 -1.4363 14 6 9.6967 1.6123 -1.4289 15 7 10.2328 0.4455 -0.7146 16 6 11.1688 -0.3629 -1.3024 17 1 11.2068 -0.4514 -2.3781 18 6 12.0687 -1.0686 -0.5156 19 7 12.3738 -0.6321 0.6880 20 14 12.8468 -2.6376 -1.1653 21 1 14.1084 -2.3073 -1.8754 22 1 13.1414 -3.5503 -0.0315 23 1 11.9091 -3.3027 -2.1053 24 6 9.7409 0.1592 0.6400 25 6 8.2151 0.0923 0.6114 26 6 7.6824 -0.0675 2.0368 27 6 7.7755 -1.1035 -0.2357 28 7 3.3639 1.2558 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.2557 4.3930 0.0010 33 1 3.7371 4.5660 0.0122 34 1 5.7412 0.4757 -0.0005 35 1 7.7538 2.4324 -1.8783 36 1 7.8545 0.6609 -2.0210 37 1 10.0087 2.5257 -0.9225 38 1 10.0696 1.6167 -2.4531 39 1 12.0357 0.2241 0.9935 40 1 10.1409 -0.7962 0.9795 41 1 10.0565 0.9517 1.3184 42 1 6.5937 -0.1146 2.0148 43 1 8.0770 -0.9860 2.4713 44 1 7.9973 0.7841 2.6400 45 1 8.1565 -0.9895 -1.2506 46 1 8.1701 -2.0217 0.1995 47 1 6.6868 -1.1513 -0.2596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940881757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:25 Heat of formation + Delta-G solvation = 6.443430 kcal Electronic energy + Delta-G solvation = -29723.626860 eV Core-core repulsion = 25715.171196 eV Total energy + Delta-G solvation = -4008.455664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.72247 -40.11267 -38.78439 -38.04021 -34.91432 -34.35203 -32.90523 -32.11373 -31.82598 -29.30737 -27.95786 -26.83700 -26.29961 -25.94731 -24.72390 -23.94536 -22.29978 -20.90725 -20.63889 -19.34085 -18.49227 -18.03456 -17.45326 -16.91488 -16.82952 -15.86249 -15.80238 -15.17110 -14.96202 -14.70972 -14.52869 -14.18457 -14.12058 -13.71031 -13.65098 -13.61817 -13.30732 -12.68538 -12.46058 -12.44139 -11.89051 -11.77634 -11.60993 -11.51491 -11.49015 -11.23915 -10.97978 -10.91808 -10.67769 -10.52033 -10.38119 -10.26860 -10.05069 -10.04207 -9.81561 -9.60954 -9.46736 -9.24768 -8.80725 -8.34737 -6.86816 -6.05494 -3.20876 0.16339 0.59908 2.09106 2.60713 2.97971 3.49956 3.51015 3.54508 3.55040 3.69912 4.11628 4.29771 4.57356 4.60348 4.81284 4.84916 4.85993 5.05388 5.15579 5.16568 5.27515 5.36395 5.42390 5.54685 5.60362 5.75770 5.86669 5.96395 6.05205 6.09592 6.16828 6.22687 6.30321 6.36989 6.38687 6.56665 6.59050 6.68286 6.72744 6.79535 6.82091 6.90619 7.09986 7.16089 7.44891 7.63945 8.02459 8.11203 8.59118 9.12719 9.86084 10.30526 11.23427 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020794 B = 0.002817 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.186935 B = 9935.991091 C =10594.991188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.287 6.287 3 C 0.499 3.501 4 N -0.557 5.557 5 C 0.189 3.811 6 C -0.212 4.212 7 C 0.178 3.822 8 C 0.565 3.435 9 O -0.523 6.523 10 N -0.691 5.691 11 C 0.160 3.840 12 H 0.084 0.916 13 C -0.144 4.144 14 C 0.150 3.850 15 N -0.596 5.596 16 C -0.346 4.346 17 H 0.056 0.944 18 C -0.023 4.023 19 N -0.916 5.916 20 Si 1.063 2.937 21 H -0.295 1.295 22 H -0.287 1.287 23 H -0.292 1.292 24 C 0.166 3.834 25 C -0.091 4.091 26 C -0.137 4.137 27 C -0.130 4.130 28 N -0.502 5.502 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.182 0.818 33 H 0.165 0.835 34 H 0.410 0.590 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.019 0.981 38 H 0.058 0.942 39 H 0.269 0.731 40 H 0.086 0.914 41 H 0.018 0.982 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.054 0.946 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.034 5.018 -0.003 24.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.188 6.188 3 C 0.196 3.804 4 N -0.287 5.287 5 C 0.022 3.978 6 C -0.235 4.235 7 C 0.029 3.971 8 C 0.347 3.653 9 O -0.398 6.398 10 N -0.341 5.341 11 C 0.057 3.943 12 H 0.102 0.898 13 C -0.184 4.184 14 C 0.023 3.977 15 N -0.319 5.319 16 C -0.475 4.475 17 H 0.073 0.927 18 C -0.225 4.225 19 N -0.556 5.556 20 Si 0.893 3.107 21 H -0.222 1.222 22 H -0.212 1.212 23 H -0.219 1.219 24 C 0.039 3.961 25 C -0.093 4.093 26 C -0.195 4.195 27 C -0.187 4.187 28 N -0.231 5.231 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.199 0.801 33 H 0.183 0.817 34 H 0.247 0.753 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.036 0.964 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -22.937 3.242 0.372 23.168 hybrid contribution -1.224 1.820 -0.458 2.241 sum -24.161 5.062 -0.086 24.685 Atomic orbital electron populations 1.23028 0.75445 1.03793 1.02852 1.86136 1.23493 1.22250 1.86916 1.20559 0.85672 0.84982 0.89201 1.68006 1.41602 0.99416 1.19671 1.23090 0.92239 0.94459 0.88006 1.22831 0.95533 1.01219 1.03957 1.21670 0.95361 0.87925 0.92120 1.17719 0.84325 0.85112 0.78141 1.90812 1.69940 1.29033 1.50048 1.46255 1.08203 1.08546 1.71139 1.21129 0.76439 0.99110 0.97589 0.89759 1.22457 0.99203 1.01171 0.95539 1.20859 0.89962 0.90039 0.96808 1.44107 1.45990 1.27164 1.14633 1.19942 1.10716 1.24241 0.92615 0.92668 1.25786 0.95362 1.04505 0.96848 1.70749 1.42398 1.21832 1.20668 0.83573 0.75590 0.76396 0.75157 1.22241 1.21232 1.21901 1.20910 0.87490 1.00671 0.87000 1.21364 0.99847 0.93667 0.94468 1.21807 0.99865 1.01796 0.96075 1.21774 0.98164 0.97218 1.01552 1.67458 1.08296 1.29377 1.17925 0.91814 0.91802 0.87658 0.80143 0.81704 0.75296 0.92569 0.91522 0.96353 0.92332 0.91968 0.89596 0.96436 0.93388 0.92320 0.93023 0.90957 0.92670 0.94645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.36 101.05 1.05 1.34 16 2 O -0.29 -3.17 10.56 -18.13 -0.19 -3.36 16 3 C 0.50 5.99 8.48 -91.37 -0.77 5.22 16 4 N -0.56 -5.58 9.20 -14.74 -0.14 -5.72 16 5 C 0.19 1.49 11.30 -17.21 -0.19 1.30 16 6 C -0.21 -2.08 9.71 -38.92 -0.38 -2.45 16 7 C 0.18 2.27 6.79 -82.65 -0.56 1.71 16 8 C 0.56 8.50 7.79 -12.05 -0.09 8.41 16 9 O -0.52 -9.05 16.08 5.38 0.09 -8.97 16 10 N -0.69 -10.42 4.28 -54.51 -0.23 -10.65 16 11 C 0.16 2.77 1.57 -67.89 -0.11 2.66 16 12 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 13 C -0.14 -2.60 5.31 -26.61 -0.14 -2.74 16 14 C 0.15 3.17 6.52 -3.71 -0.02 3.15 16 15 N -0.60 -14.40 2.30 -172.58 -0.40 -14.80 16 16 C -0.35 -9.38 9.49 -15.06 -0.14 -9.52 16 17 H 0.06 1.51 7.94 -52.49 -0.42 1.10 16 18 C -0.02 -0.64 4.68 -17.43 -0.08 -0.72 16 19 N -0.92 -26.95 12.41 55.49 0.69 -26.26 16 20 Si 1.06 24.96 29.99 -169.99 -5.10 19.86 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 24 C 0.17 3.73 3.33 -3.93 -0.01 3.72 16 25 C -0.09 -1.63 0.56 -154.61 -0.09 -1.72 16 26 C -0.14 -2.17 8.31 37.16 0.31 -1.86 16 27 C -0.13 -2.27 7.82 37.16 0.29 -1.98 16 28 N -0.50 -6.65 9.73 -11.29 -0.11 -6.76 16 29 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 30 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 31 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.18 0.65 8.06 -52.48 -0.42 0.23 16 33 H 0.17 1.40 7.73 -52.49 -0.41 0.99 16 34 H 0.41 5.87 6.04 -40.82 -0.25 5.62 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.22 6.34 -51.93 -0.33 0.89 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 39 H 0.27 8.00 6.71 -40.82 -0.27 7.72 16 40 H 0.09 2.17 6.30 -51.93 -0.33 1.85 16 41 H 0.02 0.41 7.87 -51.93 -0.41 0.01 16 42 H 0.05 0.68 7.36 -51.93 -0.38 0.30 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.41 5.97 -51.93 -0.31 1.10 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.03 0.53 6.58 -51.93 -0.34 0.18 16 LS Contribution 375.33 15.07 5.66 5.66 Total: -1.00 -31.98 375.33 -7.53 -39.51 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.84 Total: 4.99 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -0.95 Total: 6.50 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -0.19 Total: -64.18 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.10 Total: -12.33 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.10 Total: 19.86 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.98 -7.53 -39.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940881757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.951 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds