Wall clock time and date at job start Tue Mar 31 2020 19:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34878 * 120.30926 * 2 1 4 4 C 1.38042 * 119.94816 * 180.02562 * 3 2 1 5 5 C 1.47578 * 119.72696 * 180.02562 * 4 3 2 6 6 O 1.21594 * 119.99732 * 359.97438 * 5 4 3 7 7 N 1.34780 * 120.00178 * 179.97438 * 5 4 3 8 8 C 1.46497 * 120.00213 * 180.02562 * 7 5 4 9 9 H 1.09005 * 109.45617 * 325.00223 * 8 7 5 10 10 C 1.53046 * 109.46063 * 84.97039 * 8 7 5 11 11 C 1.53185 * 109.31171 * 181.38558 * 10 8 7 12 12 N 1.46925 * 108.78026 * 305.36656 * 11 10 8 13 13 C 1.36930 * 120.63524 * 233.63489 * 12 11 10 14 14 H 1.07999 * 120.00334 * 152.63232 * 13 12 11 15 15 C 1.38812 * 119.99883 * 332.62568 * 13 12 11 16 16 N 1.31622 * 120.00400 * 159.33664 * 15 13 12 17 17 Si 1.86803 * 119.99981 * 339.34009 * 15 13 12 18 18 H 1.48505 * 109.47022 * 92.96220 * 17 15 13 19 19 H 1.48503 * 109.47026 * 212.96224 * 17 15 13 20 20 H 1.48501 * 109.47010 * 332.96572 * 17 15 13 21 21 C 1.46932 * 118.73542 * 53.60861 * 12 11 10 22 22 C 1.53038 * 109.46161 * 205.03041 * 8 7 5 23 23 C 1.53003 * 109.49421 * 298.56369 * 22 8 7 24 24 C 1.52995 * 109.50024 * 58.65782 * 22 8 7 25 25 N 1.34156 * 120.54754 * 0.02562 * 4 3 2 26 26 C 1.30603 * 120.62599 * 359.97438 * 25 4 3 27 27 C 1.34957 * 120.30748 * 180.28783 * 2 1 3 28 28 O 1.21860 * 120.26997 * 359.96147 * 27 2 1 29 29 H 1.09000 * 109.46808 * 90.00064 * 1 2 3 30 30 H 1.08997 * 109.47345 * 209.99923 * 1 2 3 31 31 H 1.08997 * 109.46945 * 330.00078 * 1 2 3 32 32 H 1.07995 * 120.02159 * 0.02562 * 3 2 1 33 33 H 0.97001 * 119.99567 * 359.97438 * 7 5 4 34 34 H 1.08993 * 109.49731 * 301.33944 * 10 8 7 35 35 H 1.08997 * 109.48960 * 61.40366 * 10 8 7 36 36 H 1.09000 * 109.58737 * 65.15215 * 11 10 8 37 37 H 1.09006 * 109.58746 * 185.43782 * 11 10 8 38 38 H 0.96995 * 120.00142 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.58753 * 66.18314 * 21 12 11 40 40 H 1.09002 * 109.58342 * 186.46479 * 21 12 11 41 41 H 1.08995 * 109.47222 * 60.00065 * 23 22 8 42 42 H 1.09006 * 109.47021 * 179.97438 * 23 22 8 43 43 H 1.09003 * 109.47198 * 300.00098 * 23 22 8 44 44 H 1.09000 * 109.46621 * 60.00282 * 24 22 8 45 45 H 1.08999 * 109.47220 * 180.02562 * 24 22 8 46 46 H 1.09000 * 109.47318 * 300.00623 * 24 22 8 47 47 H 1.08004 * 119.98122 * 179.97438 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1457 1.1644 0.0000 4 6 3.5261 1.1557 -0.0005 5 6 4.2660 2.4327 0.0000 6 8 3.6596 3.4866 0.0005 7 7 5.6138 2.4306 0.0000 8 6 6.3482 3.6982 0.0012 9 1 5.8017 4.4350 -0.5876 10 6 6.4944 4.2015 1.4391 11 6 7.2323 5.5439 1.4334 12 7 8.5057 5.3806 0.7189 13 6 9.6874 5.7446 1.3071 14 1 10.6064 5.2544 1.0213 15 6 9.7044 6.7437 2.2706 16 7 10.7098 6.8258 3.1160 17 14 8.3002 7.9718 2.3674 18 1 7.2839 7.4865 3.3354 19 1 8.8231 9.2872 2.8164 20 1 7.6771 8.1180 1.0273 21 6 8.4869 4.8189 -0.6387 22 6 7.7351 3.4845 -0.6095 23 6 8.5157 2.4765 0.2365 24 6 7.5883 2.9500 -2.0355 25 7 4.2007 -0.0039 -0.0016 26 6 3.5638 -1.1441 -0.0016 27 6 2.1461 -1.1651 -0.0059 28 8 1.5474 -2.2265 -0.0105 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6112 2.1028 0.0004 33 1 6.0974 1.5898 0.0000 34 1 5.5066 4.3312 1.8813 35 1 7.0618 3.4763 2.0223 36 1 6.6233 6.2935 0.9281 37 1 7.4242 5.8597 2.4589 38 1 10.7215 7.5237 3.7895 39 1 7.9803 5.5093 -1.3129 40 1 9.5090 4.6574 -0.9814 41 1 7.9789 1.5282 0.2591 42 1 9.5033 2.3243 -0.1991 43 1 8.6210 2.8588 1.2519 44 1 7.0334 3.6693 -2.6378 45 1 8.5764 2.7975 -2.4699 46 1 7.0507 2.0020 -2.0148 47 1 4.1173 -2.0715 -0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940902073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:06 Heat of formation + Delta-G solvation = -18.480484 kcal Electronic energy + Delta-G solvation = -29744.565961 eV Core-core repulsion = 25735.029515 eV Total energy + Delta-G solvation = -4009.536446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.00211 -41.35404 -39.77165 -38.51919 -37.07914 -36.42685 -34.46862 -33.63595 -32.18940 -31.34065 -29.44653 -28.14600 -27.85774 -27.02281 -25.70989 -25.17192 -23.74079 -22.88842 -21.79501 -20.14651 -19.77801 -19.02176 -18.64538 -18.03139 -17.60897 -17.42054 -16.88162 -16.62054 -16.06993 -15.94591 -15.63744 -15.55081 -15.44793 -15.09494 -14.88593 -14.57463 -14.54166 -14.30298 -13.96192 -13.92570 -13.58991 -13.48922 -13.30112 -12.97478 -12.73375 -12.70001 -12.61886 -12.42217 -12.15587 -12.06995 -11.97495 -11.83803 -11.52607 -11.38998 -11.32942 -11.13021 -10.69784 -10.56419 -10.01941 -9.36341 -8.89943 -8.13227 -5.43619 -0.59729 0.04630 1.13870 1.31332 1.42289 1.50727 1.72369 2.13784 2.43857 2.59086 2.99124 3.05585 3.07757 3.36783 3.53914 3.67731 3.81944 3.89494 4.03513 4.07579 4.20537 4.27565 4.30454 4.36537 4.50789 4.54589 4.66291 4.70418 4.77367 4.80917 4.89226 4.91151 4.94070 4.95482 5.05012 5.13015 5.20346 5.26083 5.31968 5.35017 5.44036 5.53245 5.68194 5.90606 6.16969 6.27417 6.45600 6.65938 6.94128 7.19429 7.65572 8.06761 9.06513 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.002874 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.466730 B = 9740.759720 C =10314.040738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.475 5.475 3 C 0.196 3.804 4 C -0.095 4.095 5 C 0.587 3.413 6 O -0.573 6.573 7 N -0.693 5.693 8 C 0.173 3.827 9 H 0.075 0.925 10 C -0.134 4.134 11 C 0.126 3.874 12 N -0.613 5.613 13 C -0.235 4.235 14 H 0.059 0.941 15 C -0.033 4.033 16 N -0.956 5.956 17 Si 0.938 3.062 18 H -0.281 1.281 19 H -0.313 1.313 20 H -0.262 1.262 21 C 0.157 3.843 22 C -0.080 4.080 23 C -0.128 4.128 24 C -0.130 4.130 25 N -0.380 5.380 26 C 0.039 3.961 27 C 0.470 3.530 28 O -0.552 6.552 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.212 0.788 33 H 0.415 0.585 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.028 0.972 37 H 0.050 0.950 38 H 0.260 0.740 39 H 0.032 0.968 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.042 0.958 44 H 0.055 0.945 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.902 -15.827 -9.934 28.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.184 5.184 3 C 0.059 3.941 4 C -0.219 4.219 5 C 0.374 3.626 6 O -0.454 6.454 7 N -0.343 5.343 8 C 0.068 3.932 9 H 0.093 0.907 10 C -0.174 4.174 11 C 0.001 3.999 12 N -0.336 5.336 13 C -0.365 4.365 14 H 0.077 0.923 15 C -0.228 4.228 16 N -0.603 5.603 17 Si 0.768 3.232 18 H -0.208 1.208 19 H -0.242 1.242 20 H -0.187 1.187 21 C 0.031 3.969 22 C -0.082 4.082 23 C -0.185 4.185 24 C -0.187 4.187 25 N -0.096 5.096 26 C -0.150 4.150 27 C 0.268 3.732 28 O -0.430 6.430 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.144 0.856 32 H 0.228 0.772 33 H 0.253 0.747 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -20.874 -15.488 -9.845 27.794 hybrid contribution -0.730 0.659 0.652 1.180 sum -21.604 -14.829 -9.192 27.769 Atomic orbital electron populations 1.22727 0.73343 1.07126 1.06267 1.45750 1.11755 1.06261 1.54623 1.23472 0.92989 0.91831 0.85839 1.20196 0.90458 0.92482 1.18790 1.17481 0.82492 0.86877 0.75771 1.90798 1.68956 1.32593 1.53041 1.45843 1.05496 1.10183 1.72783 1.20716 0.91828 0.85195 0.95428 0.90706 1.22302 0.99570 0.97892 0.97653 1.21271 0.86920 0.95806 0.95940 1.44429 1.01954 1.73773 1.13492 1.18845 0.87048 1.13257 1.17354 0.92343 1.25815 0.98865 0.99986 0.98141 1.69952 1.35144 1.35595 1.19603 0.86046 0.79822 0.78882 0.78457 1.20773 1.24226 1.18697 1.21160 0.99117 0.91980 0.84623 1.21198 0.93307 0.96914 0.96763 1.21734 0.99584 0.97485 0.99699 1.21741 1.02486 1.01065 0.93445 1.67630 1.40810 0.97932 1.03183 1.25020 0.89140 0.97920 1.02970 1.19015 0.91247 0.83453 0.79524 1.90946 1.71240 1.29147 1.51683 0.88089 0.88771 0.85635 0.77174 0.74666 0.92015 0.91482 0.95423 0.93223 0.93131 0.94987 0.91714 0.91540 0.92669 0.93889 0.92632 0.91428 0.91421 0.76998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.42 127.77 1.33 1.56 16 2 N -0.48 -5.77 2.97 -671.23 -2.00 -7.77 16 3 C 0.20 2.52 9.90 84.18 0.83 3.36 16 4 C -0.10 -1.78 6.71 41.21 0.28 -1.51 16 5 C 0.59 14.37 7.75 86.71 0.67 15.04 16 6 O -0.57 -16.99 15.94 -4.01 -0.06 -17.06 16 7 N -0.69 -16.89 4.28 -445.51 -1.91 -18.79 16 8 C 0.17 5.13 1.57 45.02 0.07 5.20 16 9 H 0.07 2.42 7.58 -2.38 -0.02 2.40 16 10 C -0.13 -4.71 5.31 30.67 0.16 -4.55 16 11 C 0.13 5.43 4.20 86.36 0.36 5.79 16 12 N -0.61 -27.91 2.21 -699.10 -1.54 -29.45 16 13 C -0.24 -13.00 10.03 84.03 0.84 -12.16 16 14 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 15 C -0.03 -1.95 5.23 84.86 0.44 -1.51 16 16 N -0.96 -59.96 13.97 21.65 0.30 -59.65 16 17 Si 0.94 47.15 24.35 68.60 1.67 48.82 16 18 H -0.28 -13.56 6.62 99.48 0.66 -12.90 16 19 H -0.31 -16.05 7.11 99.48 0.71 -15.34 16 20 H -0.26 -12.69 6.63 99.48 0.66 -12.03 16 21 C 0.16 5.70 5.20 86.36 0.45 6.15 16 22 C -0.08 -2.27 0.56 -52.11 -0.03 -2.30 16 23 C -0.13 -3.67 7.83 71.98 0.56 -3.10 16 24 C -0.13 -2.84 8.31 71.98 0.60 -2.24 16 25 N -0.38 -6.78 9.62 -183.47 -1.77 -8.55 16 26 C 0.04 0.60 11.23 85.75 0.96 1.57 16 27 C 0.47 8.09 7.45 85.09 0.63 8.73 16 28 O -0.55 -12.65 16.75 -4.86 -0.08 -12.73 16 29 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.09 0.70 7.46 -2.39 -0.02 0.68 16 31 H 0.13 -0.08 8.04 -2.39 -0.02 -0.09 16 32 H 0.21 1.74 7.58 -2.91 -0.02 1.72 16 33 H 0.41 8.94 5.98 -92.71 -0.55 8.38 16 34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.07 2.42 6.34 -2.39 -0.02 2.40 16 36 H 0.03 1.19 7.08 -2.39 -0.02 1.17 16 37 H 0.05 2.38 4.50 -2.38 -0.01 2.37 16 38 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 39 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 2.38 7.93 -2.39 -0.02 2.37 16 41 H 0.07 1.52 6.58 -2.39 -0.02 1.51 16 42 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.04 1.53 5.97 -2.39 -0.01 1.52 16 44 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.07 1.29 7.36 -2.39 -0.02 1.28 16 47 H 0.21 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -74.83 367.82 3.14 -71.69 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.35 Total: 13.47 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 8.18 Total: 20.02 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -6.91 Total: -124.22 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.15 Total: -29.78 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.67 Total: 48.82 kcal Total: -74.83 3.14 -71.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940902073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.208 kcal (2) G-P(sol) polarization free energy of solvation -74.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds