Wall clock time and date at job start Tue Mar 31 2020 19:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.52500 * 2 1 4 4 C 1.53201 * 109.49522 * 239.92157 * 2 1 3 5 5 N 1.46929 * 108.77052 * 185.41158 * 4 2 1 6 6 C 1.36938 * 120.62680 * 233.58660 * 5 4 2 7 7 H 1.08005 * 120.00136 * 151.85453 * 6 5 4 8 8 C 1.38814 * 120.00254 * 331.84880 * 6 5 4 9 9 N 1.31615 * 119.99942 * 343.07054 * 8 6 5 10 10 Si 1.86805 * 119.99955 * 163.07279 * 8 6 5 11 11 H 1.48498 * 109.47257 * 89.99869 * 10 8 6 12 12 H 1.48500 * 109.46832 * 209.99886 * 10 8 6 13 13 H 1.48500 * 109.46885 * 329.99871 * 10 8 6 14 14 C 1.46927 * 118.74050 * 53.61322 * 5 4 2 15 15 C 1.53192 * 108.77070 * 306.38694 * 14 5 4 16 16 C 1.53036 * 109.49794 * 120.08605 * 2 1 3 17 17 H 1.09003 * 109.44923 * 61.30473 * 16 2 1 18 18 N 1.46497 * 109.45933 * 301.33353 * 16 2 1 19 19 C 1.34782 * 119.99973 * 154.93247 * 18 16 2 20 20 O 1.21613 * 119.99782 * 0.02562 * 19 18 16 21 21 C 1.47292 * 120.00179 * 180.02562 * 19 18 16 22 22 C 1.37925 * 125.90116 * 179.97438 * 21 19 18 23 23 C 1.39444 * 107.46392 * 180.02562 * 22 21 19 24 24 C 1.37934 * 107.46109 * 0.02562 * 23 22 21 25 25 C 1.47289 * 125.90419 * 179.97438 * 24 23 22 26 26 N 1.34781 * 120.00338 * 180.02562 * 25 24 23 27 27 O 1.21616 * 119.99870 * 0.02562 * 25 24 23 28 28 N 1.36760 * 108.19968 * 359.97438 * 24 23 22 29 29 H 0.96996 * 125.66570 * 180.02562 * 28 24 23 30 30 H 1.08999 * 109.47265 * 299.91249 * 1 2 3 31 31 H 1.09001 * 109.47496 * 59.91501 * 1 2 3 32 32 H 1.09000 * 109.47062 * 179.91227 * 1 2 3 33 33 H 1.08993 * 109.47071 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47229 * 300.08500 * 3 2 1 35 35 H 1.09007 * 109.46682 * 60.08477 * 3 2 1 36 36 H 1.09003 * 109.58572 * 65.63043 * 4 2 1 37 37 H 1.08991 * 109.70637 * 305.27120 * 4 2 1 38 38 H 0.96996 * 120.00038 * 180.02562 * 9 8 6 39 39 H 1.08998 * 109.58502 * 186.59793 * 14 5 4 40 40 H 1.09002 * 109.70390 * 66.24468 * 14 5 4 41 41 H 1.08993 * 109.49797 * 294.67768 * 15 14 5 42 42 H 1.09007 * 109.51891 * 174.59982 * 15 14 5 43 43 H 0.96993 * 120.00348 * 334.93589 * 18 16 2 44 44 H 1.08001 * 126.27045 * 359.76777 * 22 21 19 45 45 H 1.08001 * 126.27440 * 180.02562 * 23 22 21 46 46 H 0.96997 * 119.99770 * 0.02562 * 26 25 24 47 47 H 0.96999 * 120.00193 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0412 -0.7238 -1.2497 5 7 3.5046 -0.8291 -1.1697 6 6 4.2934 -0.3791 -2.1946 7 1 5.2961 -0.0325 -1.9922 8 6 3.8045 -0.3687 -3.4937 9 7 2.7413 -1.0803 -3.8025 10 14 4.6557 0.6554 -4.8038 11 1 5.7022 -0.1619 -5.4686 12 1 3.6587 1.0979 -5.8114 13 1 5.2828 1.8444 -4.1726 14 6 4.1053 -1.4267 0.0306 15 6 3.5708 -0.6951 1.2659 16 6 2.0407 -0.7232 1.2482 17 1 1.6967 -1.7574 1.2348 18 7 1.5265 -0.0531 2.4452 19 6 1.3972 -0.7388 3.5983 20 8 1.7078 -1.9137 3.6452 21 6 0.8797 -0.0653 4.8017 22 6 0.6979 -0.6470 6.0390 23 6 0.1921 0.3334 6.8920 24 6 0.0731 1.4969 6.1608 25 6 -0.4232 2.7881 6.6668 26 7 -0.4904 3.8535 5.8440 27 8 -0.7723 2.8928 7.8270 28 7 0.4955 1.2446 4.8848 29 1 0.5189 1.8879 4.1592 30 1 -0.3634 0.5125 0.8907 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0016 33 1 3.1312 1.4410 -0.0005 34 1 1.6772 1.9567 -0.8892 35 1 1.6796 1.9557 0.8908 36 1 1.7637 -0.1578 -2.1390 37 1 1.6053 -1.7214 -1.3008 38 1 2.3999 -1.0733 -4.7103 39 1 5.1895 -1.3246 -0.0140 40 1 3.8397 -2.4824 0.0878 41 1 3.9159 0.3387 1.2540 42 1 3.9334 -1.1894 2.1672 43 1 1.2791 0.8840 2.4079 44 1 0.9050 -1.6747 6.2985 45 1 -0.0602 0.2052 7.9343 46 1 -0.2122 3.7698 4.9186 47 1 -0.8175 4.7037 6.1772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941035593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:47 Heat of formation + Delta-G solvation = -38.256360 kcal Electronic energy + Delta-G solvation = -29559.036562 eV Core-core repulsion = 25548.642569 eV Total energy + Delta-G solvation = -4010.393992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.64985 -41.19004 -40.02681 -39.24144 -36.33322 -34.91942 -34.40676 -33.84861 -32.23174 -31.46281 -30.38165 -28.14402 -27.60713 -27.01135 -25.27312 -23.90966 -22.45528 -22.28970 -21.52077 -21.15455 -20.45978 -19.45981 -18.77037 -18.18090 -17.77181 -17.08032 -16.75318 -16.54161 -16.03398 -15.89811 -15.62030 -15.31818 -15.22015 -15.12349 -14.96840 -14.82153 -14.59338 -14.22955 -13.85137 -13.77497 -13.74009 -13.25857 -13.05554 -12.88622 -12.71992 -12.60497 -12.43937 -12.33298 -11.93699 -11.82651 -11.69512 -11.59582 -11.35310 -11.28097 -11.04065 -10.85324 -10.52703 -10.18912 -10.12885 -9.43315 -8.66220 -7.85741 -5.30437 -0.09593 1.08038 1.47700 1.49936 1.58626 1.67522 2.01836 2.21763 2.26003 2.40278 2.52604 3.29895 3.60919 3.68366 3.76256 3.85332 3.97241 4.09627 4.15479 4.22584 4.34802 4.44195 4.58101 4.64827 4.77382 4.79509 4.86651 4.94331 4.98673 5.04798 5.06570 5.10539 5.22440 5.31005 5.32354 5.36616 5.44400 5.48986 5.62961 5.65637 5.71991 5.76223 5.77283 6.06330 6.32861 6.40784 6.47663 7.07934 7.12718 7.17059 7.86731 8.39522 9.20921 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.002700 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.925289 B =10366.492258 C =10998.925216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 C -0.121 4.121 4 C 0.194 3.806 5 N -0.602 5.602 6 C -0.256 4.256 7 H 0.066 0.934 8 C -0.046 4.046 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.290 1.290 12 H -0.294 1.294 13 H -0.268 1.268 14 C 0.143 3.857 15 C -0.129 4.129 16 C 0.176 3.824 17 H 0.057 0.943 18 N -0.701 5.701 19 C 0.585 3.415 20 O -0.562 6.562 21 C -0.011 4.011 22 C -0.131 4.131 23 C -0.129 4.129 24 C -0.018 4.018 25 C 0.596 3.404 26 N -0.829 5.829 27 O -0.568 6.568 28 N -0.499 5.499 29 H 0.433 0.567 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.063 0.937 37 H -0.015 1.015 38 H 0.249 0.751 39 H 0.057 0.943 40 H 0.004 0.996 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.407 0.593 44 H 0.155 0.845 45 H 0.161 0.839 46 H 0.413 0.587 47 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.329 11.639 16.814 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.179 4.179 4 C 0.068 3.932 5 N -0.325 5.325 6 C -0.386 4.386 7 H 0.084 0.916 8 C -0.242 4.242 9 N -0.581 5.581 10 Si 0.790 3.210 11 H -0.217 1.217 12 H -0.220 1.220 13 H -0.192 1.192 14 C 0.017 3.983 15 C -0.169 4.169 16 C 0.071 3.929 17 H 0.076 0.924 18 N -0.352 5.352 19 C 0.372 3.628 20 O -0.440 6.440 21 C -0.129 4.129 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.136 4.136 25 C 0.381 3.619 26 N -0.394 5.394 27 O -0.447 6.447 28 N -0.099 5.099 29 H 0.274 0.726 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.003 0.997 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.022 0.978 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.244 0.756 44 H 0.173 0.827 45 H 0.179 0.821 46 H 0.244 0.756 47 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -7.336 10.838 17.268 21.667 hybrid contribution 0.390 0.697 -1.886 2.048 sum -6.946 11.535 15.382 20.443 Atomic orbital electron populations 1.21735 0.93305 1.01381 1.02340 1.21343 0.96000 0.97127 0.94424 1.21687 1.01430 0.93524 1.01218 1.20613 0.82513 0.95141 0.94932 1.44266 1.02118 1.69546 1.16551 1.19438 0.98228 1.34460 0.86451 0.91605 1.25724 0.99377 1.00227 0.98862 1.70175 1.27240 1.41869 1.18781 0.85367 0.77418 0.79121 0.79067 1.21741 1.21994 1.19244 1.20962 0.96883 0.93814 0.86685 1.22257 0.95162 1.01744 0.97692 1.20666 0.93293 0.95867 0.83031 0.92434 1.45898 1.65480 1.14556 1.09273 1.17414 0.77473 0.85808 0.82118 1.90843 1.51664 1.16954 1.84533 1.20371 1.11135 0.85193 0.96227 1.21443 1.02734 1.00752 0.90795 1.21455 1.02780 0.90605 1.00691 1.20498 1.11147 0.96431 0.85544 1.17134 0.76869 0.82878 0.85063 1.43543 1.67954 1.12993 1.14901 1.90881 1.50688 1.84449 1.18643 1.41745 1.48117 1.09509 1.10523 0.72576 0.90459 0.92469 0.94110 0.92965 0.93570 0.90713 0.91830 0.99712 0.94167 0.92445 0.97837 0.90541 0.92184 0.75556 0.82687 0.82093 0.75582 0.74731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.31 71.98 0.60 -2.80 16 2 C -0.09 -2.71 0.56 -52.10 -0.03 -2.74 16 3 C -0.12 -3.28 7.83 71.98 0.56 -2.72 16 4 C 0.19 8.68 3.98 86.36 0.34 9.02 16 5 N -0.60 -28.51 2.43 -699.07 -1.70 -30.20 16 6 C -0.26 -13.33 9.58 84.03 0.81 -12.52 16 7 H 0.07 3.36 7.89 -2.91 -0.02 3.34 16 8 C -0.05 -2.49 4.92 84.86 0.42 -2.07 16 9 N -0.93 -53.41 11.20 21.65 0.24 -53.17 16 10 Si 0.96 43.04 29.59 68.60 2.03 45.07 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 13 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 14 C 0.14 5.86 6.52 86.36 0.56 6.43 16 15 C -0.13 -4.19 5.31 30.67 0.16 -4.03 16 16 C 0.18 5.34 1.57 45.02 0.07 5.41 16 17 H 0.06 2.12 7.58 -2.39 -0.02 2.10 16 18 N -0.70 -15.18 4.28 -445.81 -1.91 -17.09 16 19 C 0.58 14.69 7.77 86.62 0.67 15.36 16 20 O -0.56 -19.30 16.54 -4.07 -0.07 -19.37 16 21 C -0.01 -0.21 7.04 40.68 0.29 0.07 16 22 C -0.13 -2.64 10.60 22.49 0.24 -2.41 16 23 C -0.13 -2.35 10.60 22.49 0.24 -2.11 16 24 C -0.02 -0.28 7.04 40.68 0.29 0.01 16 25 C 0.60 9.07 8.08 86.62 0.70 9.77 16 26 N -0.83 -4.65 8.87 -175.98 -1.56 -6.22 16 27 O -0.57 -13.61 17.71 -4.08 -0.07 -13.68 16 28 N -0.50 -5.87 5.90 -172.56 -1.02 -6.89 16 29 H 0.43 1.74 7.34 -92.71 -0.68 1.06 16 30 H 0.08 1.44 7.36 -2.39 -0.02 1.43 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.66 5.97 -2.39 -0.01 1.64 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.26 6.58 -2.38 -0.02 1.25 16 36 H 0.06 3.22 6.06 -2.39 -0.01 3.21 16 37 H -0.02 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 39 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 40 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.08 2.32 6.33 -2.39 -0.02 2.31 16 42 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.41 5.70 5.76 -92.71 -0.53 5.17 16 44 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 45 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 46 H 0.41 -0.28 7.93 -92.71 -0.74 -1.02 16 47 H 0.42 1.46 8.93 -92.71 -0.83 0.63 16 Total: -1.00 -75.00 376.48 0.13 -74.87 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -1.73 Total: 12.01 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 5.92 Total: 14.67 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -5.95 Total: -113.58 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.14 Total: -33.05 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -75.00 0.13 -74.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941035593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.609 kcal (2) G-P(sol) polarization free energy of solvation -75.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds