Wall clock time and date at job start Tue Mar 31 2020 19:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35669 * 117.00047 * 2 1 4 4 C 1.39497 * 120.00916 * 180.02562 * 3 2 1 5 5 N 1.31955 * 120.10756 * 179.97438 * 4 3 2 6 6 C 1.32181 * 120.14691 * 359.72407 * 5 4 3 7 7 C 1.39242 * 120.02345 * 0.53257 * 6 5 4 8 8 C 1.48128 * 120.05979 * 179.75208 * 7 6 5 9 9 O 1.21519 * 120.00003 * 359.72251 * 8 7 6 10 10 N 1.34778 * 120.00140 * 179.71688 * 8 7 6 11 11 C 1.46504 * 120.00018 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.44877 * 34.96626 * 11 10 8 13 13 C 1.53045 * 109.45883 * 275.00421 * 11 10 8 14 14 C 1.53189 * 109.31183 * 178.61566 * 13 11 10 15 15 N 1.46933 * 108.77712 * 54.63310 * 14 13 11 16 16 C 1.36936 * 120.62939 * 126.36691 * 15 14 13 17 17 H 1.07995 * 120.00289 * 332.50485 * 16 15 14 18 18 C 1.38817 * 119.99502 * 152.50384 * 16 15 14 19 19 N 1.31612 * 120.00107 * 335.02596 * 18 16 15 20 20 Si 1.86801 * 119.99419 * 155.02751 * 18 16 15 21 21 H 1.48497 * 109.47275 * 90.00269 * 20 18 16 22 22 H 1.48502 * 109.46928 * 209.99622 * 20 18 16 23 23 H 1.48494 * 109.47235 * 329.99781 * 20 18 16 24 24 C 1.46930 * 118.73578 * 306.64412 * 15 14 13 25 25 C 1.52757 * 109.00623 * 53.30912 * 24 15 14 26 26 C 1.53002 * 109.56342 * 185.54745 * 25 24 15 27 27 C 1.53001 * 109.36264 * 65.49898 * 25 24 15 28 28 N 1.32159 * 120.01415 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.47353 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47595 * 300.00554 * 1 2 3 31 31 H 1.09005 * 109.46878 * 60.00582 * 1 2 3 32 32 H 1.07992 * 119.94644 * 359.95049 * 4 3 2 33 33 H 1.08000 * 119.99338 * 180.27835 * 6 5 4 34 34 H 0.96999 * 119.99946 * 0.02562 * 10 8 7 35 35 H 1.08994 * 109.49993 * 58.66025 * 13 11 10 36 36 H 1.09001 * 109.52374 * 298.58317 * 13 11 10 37 37 H 1.09000 * 109.58791 * 294.84911 * 14 13 11 38 38 H 1.09003 * 109.70663 * 174.48983 * 14 13 11 39 39 H 0.96997 * 120.00247 * 354.26122 * 19 18 16 40 40 H 1.09001 * 109.58180 * 173.14154 * 24 15 14 41 41 H 1.08991 * 109.58526 * 293.56754 * 24 15 14 42 42 H 1.08999 * 109.47539 * 179.97438 * 26 25 24 43 43 H 1.08997 * 109.47556 * 299.96818 * 26 25 24 44 44 H 1.09007 * 109.46919 * 59.96544 * 26 25 24 45 45 H 1.09002 * 109.47061 * 300.15618 * 27 25 24 46 46 H 1.09006 * 109.47136 * 60.15349 * 27 25 24 47 47 H 1.08998 * 109.47171 * 180.15460 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4379 1.2820 -0.0005 5 7 4.0390 2.4567 -0.0011 6 6 3.3238 3.5684 -0.0066 7 6 1.9330 3.5021 -0.0006 8 6 1.1308 4.7473 -0.0013 9 8 1.6865 5.8280 -0.0018 10 7 -0.2154 4.6818 -0.0013 11 6 -1.0087 5.9134 -0.0025 12 1 -0.4971 6.6741 -0.5921 13 6 -1.1791 6.4115 1.4346 14 6 -1.9795 7.7177 1.4265 15 7 -3.2435 7.4934 0.7117 16 6 -4.4414 7.8022 1.2990 17 1 -4.5363 7.7832 2.3746 18 6 -5.5337 8.1396 0.5116 19 7 -5.3482 8.6388 -0.6920 20 14 -7.2668 7.8853 1.1605 21 1 -7.7144 9.1105 1.8702 22 1 -8.1842 7.6073 0.0263 23 1 -7.2796 6.7360 2.1007 24 6 -3.1979 6.9258 -0.6427 25 6 -2.3836 5.6337 -0.6135 26 6 -2.2109 5.1046 -2.0387 27 6 -3.1164 4.5913 0.2334 28 7 1.3253 2.3174 -0.0005 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 4.0253 0.3759 -0.0001 33 1 3.8184 4.5285 -0.0115 34 1 -0.6589 3.8191 -0.0005 35 1 -0.1988 6.5882 1.8770 36 1 -1.7122 5.6618 2.0192 37 1 -1.4063 8.4943 0.9203 38 1 -2.1887 8.0268 2.4506 39 1 -4.4518 8.8487 -0.9972 40 1 -4.2109 6.7101 -0.9827 41 1 -2.7261 7.6365 -1.3211 42 1 -1.6294 4.1830 -2.0163 43 1 -3.1904 4.9055 -2.4736 44 1 -1.6901 5.8484 -2.6418 45 1 -3.2403 4.9696 1.2482 46 1 -4.0956 4.3924 -0.2022 47 1 -2.5355 3.6693 0.2577 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941074786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:49 Heat of formation + Delta-G solvation = -1.949926 kcal Electronic energy + Delta-G solvation = -30005.500171 eV Core-core repulsion = 25996.680544 eV Total energy + Delta-G solvation = -4008.819627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.80637 -40.10362 -38.88648 -38.12236 -35.00111 -34.56464 -32.95418 -32.16651 -31.51287 -29.30657 -28.02288 -26.91713 -26.29347 -25.94111 -24.64330 -24.00817 -22.38670 -20.92721 -20.65722 -19.22677 -18.65753 -17.99097 -17.45637 -17.19848 -16.72600 -16.62781 -15.86338 -15.22627 -14.94342 -14.69404 -14.51835 -14.21605 -13.81540 -13.73801 -13.66559 -13.40407 -13.34412 -12.74161 -12.52527 -12.50637 -12.07211 -11.98955 -11.94838 -11.58818 -11.55639 -11.34298 -11.02650 -10.97772 -10.71611 -10.60296 -10.43894 -10.34615 -10.10317 -10.08481 -9.86181 -9.59570 -9.28311 -9.21327 -8.82664 -8.38379 -6.90646 -6.09041 -3.24639 0.02083 0.64797 2.43354 2.53953 2.91060 3.43071 3.48102 3.50971 3.52950 3.66485 3.87169 4.02296 4.56733 4.67825 4.74374 4.87823 4.91362 4.95695 5.02738 5.10463 5.24093 5.30646 5.37318 5.50026 5.62169 5.71110 5.79500 5.90794 5.96099 6.05580 6.15213 6.25123 6.30121 6.33673 6.47933 6.50822 6.53474 6.62513 6.68823 6.74679 6.78097 6.84553 7.04253 7.10816 7.18411 7.53166 7.98779 8.09397 8.55469 9.08971 9.82371 10.26698 11.19831 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.003028 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.271806 B = 9244.296975 C = 9977.687917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.298 6.298 3 C 0.275 3.725 4 C 0.064 3.936 5 N -0.405 5.405 6 C 0.064 3.936 7 C 0.080 3.920 8 C 0.568 3.432 9 O -0.525 6.525 10 N -0.695 5.695 11 C 0.161 3.839 12 H 0.085 0.915 13 C -0.143 4.143 14 C 0.150 3.850 15 N -0.596 5.596 16 C -0.347 4.347 17 H 0.056 0.944 18 C -0.023 4.023 19 N -0.916 5.916 20 Si 1.063 2.937 21 H -0.295 1.295 22 H -0.286 1.286 23 H -0.293 1.293 24 C 0.166 3.834 25 C -0.091 4.091 26 C -0.137 4.137 27 C -0.128 4.128 28 N -0.475 5.475 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.182 0.818 33 H 0.187 0.813 34 H 0.405 0.595 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.019 0.981 38 H 0.058 0.942 39 H 0.269 0.731 40 H 0.086 0.914 41 H 0.018 0.982 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.054 0.946 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.363 -17.325 -0.001 21.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.203 6.203 3 C 0.090 3.910 4 C -0.101 4.101 5 N -0.118 5.118 6 C -0.094 4.094 7 C -0.060 4.060 8 C 0.350 3.650 9 O -0.401 6.401 10 N -0.345 5.345 11 C 0.057 3.943 12 H 0.103 0.897 13 C -0.183 4.183 14 C 0.023 3.977 15 N -0.319 5.319 16 C -0.476 4.476 17 H 0.073 0.927 18 C -0.225 4.225 19 N -0.556 5.556 20 Si 0.893 3.107 21 H -0.222 1.222 22 H -0.212 1.212 23 H -0.219 1.219 24 C 0.039 3.961 25 C -0.093 4.093 26 C -0.195 4.195 27 C -0.186 4.186 28 N -0.208 5.208 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.199 0.801 33 H 0.204 0.796 34 H 0.242 0.758 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.036 0.964 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.073 0.927 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 12.164 -16.645 -0.373 20.619 hybrid contribution 1.144 -0.524 0.462 1.341 sum 13.308 -17.168 0.089 21.723 Atomic orbital electron populations 1.23028 0.76341 1.03794 1.03002 1.86283 1.23589 1.23045 1.87339 1.20975 0.91095 0.85399 0.93567 1.23238 0.89652 0.97893 0.99304 1.68638 1.38009 0.97655 1.07540 1.23673 0.90701 0.98647 0.96344 1.22118 0.93600 0.91570 0.98698 1.17640 0.82804 0.86682 0.77851 1.90824 1.71333 1.27820 1.50107 1.46203 1.05123 1.11352 1.71810 1.21115 0.90679 0.84896 0.97566 0.89744 1.22448 0.99949 1.00370 0.95536 1.20863 0.87404 0.92623 0.96816 1.44109 1.01493 1.71672 1.14626 1.19944 0.88683 1.46340 0.92626 0.92655 1.25790 1.03229 0.96624 0.96844 1.70751 1.25347 1.38820 1.20672 0.83571 0.75945 0.76047 0.75150 1.22204 1.21226 1.21926 1.20904 0.99040 0.89082 0.87041 1.21362 0.94037 0.99552 0.94384 1.21799 1.01451 1.00054 0.96157 1.21763 0.99226 0.95917 1.01664 1.67966 1.40122 0.98147 1.14545 0.87904 0.91786 0.91798 0.80068 0.79599 0.75781 0.92536 0.91649 0.96319 0.92335 0.91960 0.89617 0.96420 0.93580 0.92346 0.92956 0.90916 0.92681 0.94946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.39 101.05 1.05 1.28 16 2 O -0.30 -2.58 10.49 -18.71 -0.20 -2.78 16 3 C 0.27 2.71 7.50 -16.94 -0.13 2.59 16 4 C 0.06 0.57 11.18 -17.03 -0.19 0.38 16 5 N -0.40 -4.25 10.48 -12.58 -0.13 -4.38 16 6 C 0.06 0.72 10.76 -17.03 -0.18 0.54 16 7 C 0.08 0.99 6.75 -82.86 -0.56 0.43 16 8 C 0.57 8.26 7.78 -12.20 -0.09 8.17 16 9 O -0.52 -9.01 16.00 5.35 0.09 -8.92 16 10 N -0.69 -9.87 4.28 -54.62 -0.23 -10.10 16 11 C 0.16 2.68 1.57 -67.89 -0.11 2.57 16 12 H 0.08 1.57 7.57 -51.93 -0.39 1.18 16 13 C -0.14 -2.52 5.31 -26.61 -0.14 -2.67 16 14 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 15 N -0.60 -14.16 2.30 -172.58 -0.40 -14.56 16 16 C -0.35 -9.27 9.49 -15.06 -0.14 -9.41 16 17 H 0.06 1.50 7.94 -52.49 -0.42 1.08 16 18 C -0.02 -0.62 4.68 -17.43 -0.08 -0.71 16 19 N -0.92 -26.61 12.41 55.49 0.69 -25.93 16 20 Si 1.06 24.59 29.99 -169.99 -5.10 19.49 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.17 3.65 3.33 -3.93 -0.01 3.64 16 25 C -0.09 -1.56 0.56 -154.61 -0.09 -1.65 16 26 C -0.14 -2.05 8.31 37.16 0.31 -1.75 16 27 C -0.13 -2.11 7.82 37.16 0.29 -1.82 16 28 N -0.47 -5.35 8.60 -9.69 -0.08 -5.43 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 31 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16 32 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.19 1.92 7.64 -52.49 -0.40 1.52 16 34 H 0.41 5.23 6.01 -40.82 -0.25 4.99 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.16 6.34 -51.93 -0.33 0.83 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 39 H 0.27 7.92 6.71 -40.82 -0.27 7.64 16 40 H 0.09 2.13 6.30 -51.93 -0.33 1.80 16 41 H 0.02 0.41 7.87 -51.93 -0.41 0.00 16 42 H 0.05 0.61 7.36 -51.93 -0.38 0.23 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 1.36 5.97 -51.93 -0.31 1.05 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.03 0.43 6.58 -51.93 -0.34 0.09 16 LS Contribution 375.17 15.07 5.65 5.65 Total: -1.00 -30.53 375.17 -6.65 -37.18 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.84 Total: 5.09 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -0.10 Total: 4.68 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.16 Total: -60.39 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.11 Total: -11.70 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.10 Total: 19.49 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.53 -6.65 -37.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941074786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.231 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds