Wall clock time and date at job start Tue Mar 31 2020 19:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35669 * 117.00047 * 2 1 4 4 C 1.39497 * 120.00916 * 180.02562 * 3 2 1 5 5 N 1.31955 * 120.10756 * 179.97438 * 4 3 2 6 6 C 1.32181 * 120.14691 * 359.72407 * 5 4 3 7 7 C 1.39242 * 120.02345 * 0.53257 * 6 5 4 8 8 C 1.48128 * 120.05979 * 179.75208 * 7 6 5 9 9 O 1.21519 * 120.00003 * 359.72251 * 8 7 6 10 10 N 1.34778 * 120.00140 * 179.71688 * 8 7 6 11 11 C 1.46504 * 120.00018 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.44877 * 34.96626 * 11 10 8 13 13 C 1.53045 * 109.45883 * 275.00421 * 11 10 8 14 14 C 1.53189 * 109.31183 * 178.61566 * 13 11 10 15 15 N 1.46933 * 108.77712 * 54.63310 * 14 13 11 16 16 C 1.36936 * 120.62939 * 126.36691 * 15 14 13 17 17 H 1.07995 * 120.00289 * 332.50485 * 16 15 14 18 18 C 1.38817 * 119.99502 * 152.50384 * 16 15 14 19 19 N 1.31612 * 120.00107 * 335.02596 * 18 16 15 20 20 Si 1.86801 * 119.99419 * 155.02751 * 18 16 15 21 21 H 1.48497 * 109.47275 * 90.00269 * 20 18 16 22 22 H 1.48502 * 109.46928 * 209.99622 * 20 18 16 23 23 H 1.48494 * 109.47235 * 329.99781 * 20 18 16 24 24 C 1.46930 * 118.73578 * 306.64412 * 15 14 13 25 25 C 1.52757 * 109.00623 * 53.30912 * 24 15 14 26 26 C 1.53002 * 109.56342 * 185.54745 * 25 24 15 27 27 C 1.53001 * 109.36264 * 65.49898 * 25 24 15 28 28 N 1.32159 * 120.01415 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.47353 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47595 * 300.00554 * 1 2 3 31 31 H 1.09005 * 109.46878 * 60.00582 * 1 2 3 32 32 H 1.07992 * 119.94644 * 359.95049 * 4 3 2 33 33 H 1.08000 * 119.99338 * 180.27835 * 6 5 4 34 34 H 0.96999 * 119.99946 * 0.02562 * 10 8 7 35 35 H 1.08994 * 109.49993 * 58.66025 * 13 11 10 36 36 H 1.09001 * 109.52374 * 298.58317 * 13 11 10 37 37 H 1.09000 * 109.58791 * 294.84911 * 14 13 11 38 38 H 1.09003 * 109.70663 * 174.48983 * 14 13 11 39 39 H 0.96997 * 120.00247 * 354.26122 * 19 18 16 40 40 H 1.09001 * 109.58180 * 173.14154 * 24 15 14 41 41 H 1.08991 * 109.58526 * 293.56754 * 24 15 14 42 42 H 1.08999 * 109.47539 * 179.97438 * 26 25 24 43 43 H 1.08997 * 109.47556 * 299.96818 * 26 25 24 44 44 H 1.09007 * 109.46919 * 59.96544 * 26 25 24 45 45 H 1.09002 * 109.47061 * 300.15618 * 27 25 24 46 46 H 1.09006 * 109.47136 * 60.15349 * 27 25 24 47 47 H 1.08998 * 109.47171 * 180.15460 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4379 1.2820 -0.0005 5 7 4.0390 2.4567 -0.0011 6 6 3.3238 3.5684 -0.0066 7 6 1.9330 3.5021 -0.0006 8 6 1.1308 4.7473 -0.0013 9 8 1.6865 5.8280 -0.0018 10 7 -0.2154 4.6818 -0.0013 11 6 -1.0087 5.9134 -0.0025 12 1 -0.4971 6.6741 -0.5921 13 6 -1.1791 6.4115 1.4346 14 6 -1.9795 7.7177 1.4265 15 7 -3.2435 7.4934 0.7117 16 6 -4.4414 7.8022 1.2990 17 1 -4.5363 7.7832 2.3746 18 6 -5.5337 8.1396 0.5116 19 7 -5.3482 8.6388 -0.6920 20 14 -7.2668 7.8853 1.1605 21 1 -7.7144 9.1105 1.8702 22 1 -8.1842 7.6073 0.0263 23 1 -7.2796 6.7360 2.1007 24 6 -3.1979 6.9258 -0.6427 25 6 -2.3836 5.6337 -0.6135 26 6 -2.2109 5.1046 -2.0387 27 6 -3.1164 4.5913 0.2334 28 7 1.3253 2.3174 -0.0005 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 4.0253 0.3759 -0.0001 33 1 3.8184 4.5285 -0.0115 34 1 -0.6589 3.8191 -0.0005 35 1 -0.1988 6.5882 1.8770 36 1 -1.7122 5.6618 2.0192 37 1 -1.4063 8.4943 0.9203 38 1 -2.1887 8.0268 2.4506 39 1 -4.4518 8.8487 -0.9972 40 1 -4.2109 6.7101 -0.9827 41 1 -2.7261 7.6365 -1.3211 42 1 -1.6294 4.1830 -2.0163 43 1 -3.1904 4.9055 -2.4736 44 1 -1.6901 5.8484 -2.6418 45 1 -3.2403 4.9696 1.2482 46 1 -4.0956 4.3924 -0.2022 47 1 -2.5355 3.6693 0.2577 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941074786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:48 Heat of formation + Delta-G solvation = -23.460589 kcal Electronic energy + Delta-G solvation = -30006.432944 eV Core-core repulsion = 25996.680544 eV Total energy + Delta-G solvation = -4009.752399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.63529 -41.37975 -39.88676 -39.22931 -36.58417 -35.53779 -34.32165 -33.91099 -32.36414 -31.00049 -28.66593 -28.27751 -27.80646 -27.28073 -25.97655 -24.87508 -23.93739 -22.48516 -21.99303 -20.33646 -19.53603 -19.44743 -19.10676 -17.93342 -17.71473 -17.44047 -17.13824 -16.38642 -16.26962 -16.07896 -15.57238 -15.48590 -15.38754 -15.19198 -15.11395 -14.86513 -14.28351 -14.12358 -14.01836 -13.63314 -13.21311 -13.03414 -12.96134 -12.75354 -12.72052 -12.63493 -12.56316 -12.48180 -12.16633 -12.09918 -11.90364 -11.83695 -11.74072 -11.67028 -11.43839 -11.13688 -10.49088 -10.44639 -10.19597 -9.90382 -8.92046 -8.22732 -5.36948 -0.81754 -0.13976 1.51750 1.60158 1.66869 1.74886 1.82074 1.84620 2.54810 2.65906 2.66794 3.08233 3.22886 3.26286 3.49747 3.57755 3.75575 3.84028 3.95551 3.97039 4.21473 4.29292 4.30404 4.40809 4.40981 4.44516 4.52608 4.68462 4.73816 4.75061 4.78468 4.85416 4.90684 4.93027 4.98684 5.07518 5.12213 5.18084 5.26640 5.32879 5.37105 5.57558 5.77051 5.86946 5.87935 6.28796 6.41098 6.49168 6.95743 7.06012 7.79247 8.23544 9.02870 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.003028 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.271806 B = 9244.296975 C = 9977.687917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.296 6.296 3 C 0.271 3.729 4 C 0.083 3.917 5 N -0.415 5.415 6 C 0.065 3.935 7 C 0.063 3.937 8 C 0.572 3.428 9 O -0.556 6.556 10 N -0.686 5.686 11 C 0.173 3.827 12 H 0.064 0.936 13 C -0.128 4.128 14 C 0.147 3.853 15 N -0.610 5.610 16 C -0.348 4.348 17 H 0.050 0.950 18 C -0.072 4.072 19 N -0.942 5.942 20 Si 1.112 2.888 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.274 1.274 24 C 0.176 3.824 25 C -0.082 4.082 26 C -0.131 4.131 27 C -0.121 4.121 28 N -0.479 5.479 29 H 0.129 0.871 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.218 0.782 33 H 0.188 0.812 34 H 0.415 0.585 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.009 0.991 38 H 0.055 0.945 39 H 0.253 0.747 40 H 0.055 0.945 41 H -0.005 1.005 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.050 0.950 46 H 0.048 0.952 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.216 -20.615 0.518 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.200 6.200 3 C 0.085 3.915 4 C -0.083 4.083 5 N -0.129 5.129 6 C -0.092 4.092 7 C -0.075 4.075 8 C 0.356 3.644 9 O -0.434 6.434 10 N -0.336 5.336 11 C 0.068 3.932 12 H 0.083 0.917 13 C -0.168 4.168 14 C 0.021 3.979 15 N -0.334 5.334 16 C -0.478 4.478 17 H 0.068 0.932 18 C -0.269 4.269 19 N -0.584 5.584 20 Si 0.937 3.063 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.199 1.199 24 C 0.049 3.951 25 C -0.084 4.084 26 C -0.188 4.188 27 C -0.178 4.178 28 N -0.213 5.213 29 H 0.147 0.853 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.235 0.765 33 H 0.205 0.795 34 H 0.253 0.747 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.027 0.973 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.013 0.987 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.041 -19.950 0.160 23.835 hybrid contribution 0.977 0.423 0.321 1.112 sum 14.018 -19.528 0.481 24.043 Atomic orbital electron populations 1.23239 0.75280 1.05519 1.02675 1.86305 1.24613 1.22105 1.87014 1.21203 0.91623 0.85370 0.93280 1.23862 0.89686 0.98459 0.96300 1.68726 1.37977 0.97944 1.08242 1.23709 0.90360 0.99240 0.95898 1.21648 0.93487 0.90971 1.01408 1.17911 0.82625 0.87199 0.76682 1.90809 1.71844 1.29325 1.51383 1.45929 1.05068 1.10619 1.72012 1.20734 0.90430 0.85623 0.96388 0.91736 1.22246 0.99549 0.98573 0.96440 1.20937 0.86640 0.94269 0.96065 1.44296 1.01697 1.72168 1.15196 1.20163 0.89868 1.45165 0.92576 0.93194 1.27071 1.06732 0.96381 0.96690 1.70873 1.24235 1.41360 1.21969 0.82904 0.71800 0.76750 0.74821 1.21429 1.21641 1.19939 1.20721 0.97917 0.90828 0.85622 1.21166 0.93572 0.97293 0.96375 1.21746 1.01967 1.00895 0.94232 1.21677 0.99427 0.96882 0.99843 1.67859 1.40533 0.98155 1.14748 0.85278 0.92157 0.92021 0.76549 0.79465 0.74676 0.91843 0.91103 0.97310 0.92665 0.93671 0.92668 0.98665 0.90956 0.92211 0.93505 0.93067 0.93325 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.39 113.37 1.18 1.47 16 2 O -0.30 -4.13 10.49 -89.86 -0.94 -5.07 16 3 C 0.27 4.54 7.50 84.95 0.64 5.18 16 4 C 0.08 1.19 11.18 84.98 0.95 2.14 16 5 N -0.42 -7.71 10.48 -193.73 -2.03 -9.74 16 6 C 0.06 1.36 10.76 84.88 0.91 2.27 16 7 C 0.06 1.46 6.75 41.81 0.28 1.74 16 8 C 0.57 16.07 7.78 86.87 0.68 16.74 16 9 O -0.56 -18.98 16.00 -3.78 -0.06 -19.04 16 10 N -0.69 -18.47 4.28 -445.00 -1.90 -20.37 16 11 C 0.17 5.71 1.57 45.02 0.07 5.78 16 12 H 0.06 2.44 7.57 -2.39 -0.02 2.42 16 13 C -0.13 -4.50 5.31 30.67 0.16 -4.34 16 14 C 0.15 6.27 6.52 86.36 0.56 6.84 16 15 N -0.61 -29.86 2.30 -699.92 -1.61 -31.47 16 16 C -0.35 -18.99 9.49 84.03 0.80 -18.19 16 17 H 0.05 2.74 7.94 -2.91 -0.02 2.72 16 18 C -0.07 -4.03 4.68 84.86 0.40 -3.63 16 19 N -0.94 -56.59 12.41 21.65 0.27 -56.32 16 20 Si 1.11 50.02 29.99 68.60 2.06 52.08 16 21 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 24 C 0.18 8.00 3.33 86.22 0.29 8.28 16 25 C -0.08 -2.79 0.56 -52.25 -0.03 -2.82 16 26 C -0.13 -3.79 8.31 71.98 0.60 -3.19 16 27 C -0.12 -3.82 7.82 71.98 0.56 -3.26 16 28 N -0.48 -9.64 8.60 -297.48 -2.56 -12.20 16 29 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.69 8.11 -2.38 -0.02 0.67 16 31 H 0.06 0.69 8.11 -2.38 -0.02 0.67 16 32 H 0.22 1.44 8.06 -2.91 -0.02 1.41 16 33 H 0.19 3.75 7.64 -2.91 -0.02 3.73 16 34 H 0.41 9.65 6.01 -92.71 -0.56 9.09 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.07 2.43 6.34 -2.39 -0.02 2.42 16 37 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.05 2.35 7.93 -2.39 -0.02 2.33 16 39 H 0.25 15.63 6.71 -92.71 -0.62 15.01 16 40 H 0.05 2.85 6.30 -2.39 -0.02 2.83 16 41 H 0.00 -0.23 7.87 -2.39 -0.02 -0.24 16 42 H 0.07 1.72 7.36 -2.39 -0.02 1.71 16 43 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.05 1.85 5.97 -2.39 -0.01 1.84 16 46 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 47 H 0.07 1.65 6.58 -2.39 -0.02 1.64 16 Total: -1.00 -67.87 375.17 1.85 -66.01 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.58 Total: 21.12 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 8.05 Total: 15.00 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -7.83 Total: -130.10 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -1.00 Total: -24.11 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.06 Total: 52.08 kcal Total: -67.87 1.85 -66.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941074786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.554 kcal (2) G-P(sol) polarization free energy of solvation -67.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds