Wall clock time and date at job start Tue Mar 31 2020 19:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35666 * 117.00262 * 2 1 4 4 C 1.39485 * 120.01326 * 180.02562 * 3 2 1 5 5 N 1.31958 * 120.11254 * 180.02562 * 4 3 2 6 6 C 1.32186 * 120.14354 * 359.97438 * 5 4 3 7 7 C 1.39241 * 120.02532 * 0.02562 * 6 5 4 8 8 C 1.48128 * 120.05821 * 179.97438 * 7 6 5 9 9 O 1.21518 * 119.99934 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99899 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00031 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.45948 * 325.03188 * 11 10 8 13 13 C 1.53037 * 109.45842 * 85.00057 * 11 10 8 14 14 C 1.53195 * 109.33601 * 181.35737 * 13 11 10 15 15 N 1.46938 * 108.77383 * 305.41494 * 14 13 11 16 16 C 1.36932 * 120.60253 * 233.58103 * 15 14 13 17 17 H 1.08001 * 120.00567 * 27.66330 * 16 15 14 18 18 C 1.38816 * 119.99918 * 207.65874 * 16 15 14 19 19 N 1.31623 * 119.99748 * 17.35457 * 18 16 15 20 20 Si 1.86801 * 120.00255 * 197.36032 * 18 16 15 21 21 H 1.48499 * 109.47108 * 59.99538 * 20 18 16 22 22 H 1.48501 * 109.47078 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46872 * 299.99914 * 20 18 16 24 24 C 1.46921 * 118.76297 * 53.55543 * 15 14 13 25 25 C 1.53038 * 109.45044 * 205.06283 * 11 10 8 26 26 C 1.52995 * 109.49970 * 298.57641 * 25 11 10 27 27 C 1.53010 * 109.49592 * 58.63744 * 25 11 10 28 28 N 1.32169 * 120.00803 * 0.27494 * 3 2 1 29 29 H 1.08993 * 109.46919 * 59.99910 * 1 2 3 30 30 H 1.08997 * 109.47053 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46428 * 299.99907 * 1 2 3 32 32 H 1.08001 * 119.94469 * 0.03896 * 4 3 2 33 33 H 1.08000 * 119.98657 * 180.02562 * 6 5 4 34 34 H 0.96998 * 119.99459 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.50271 * 301.32268 * 13 11 10 36 36 H 1.08999 * 109.49795 * 61.39163 * 13 11 10 37 37 H 1.08997 * 109.58991 * 65.17187 * 14 13 11 38 38 H 1.09009 * 109.58378 * 185.59532 * 14 13 11 39 39 H 0.96998 * 119.99441 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.58941 * 186.62611 * 24 15 14 41 41 H 1.09000 * 109.70235 * 66.27122 * 24 15 14 42 42 H 1.09001 * 109.47391 * 59.99374 * 26 25 11 43 43 H 1.08996 * 109.47493 * 180.02562 * 26 25 11 44 44 H 1.09007 * 109.46324 * 299.99890 * 26 25 11 45 45 H 1.08995 * 109.46810 * 60.00211 * 27 25 11 46 46 H 1.08994 * 109.46738 * 179.97438 * 27 25 11 47 47 H 1.08998 * 109.47197 * 299.99995 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4379 1.2820 -0.0005 5 7 4.0391 2.4567 0.0000 6 6 3.3239 3.5684 0.0005 7 6 1.9331 3.5021 0.0010 8 6 1.1309 4.7474 0.0022 9 8 1.6866 5.8280 0.0022 10 7 -0.2153 4.6818 0.0022 11 6 -1.0086 5.9134 0.0027 12 1 -0.4972 6.6745 0.5921 13 6 -1.1790 6.4107 -1.4345 14 6 -1.9800 7.7165 -1.4278 15 7 -3.2436 7.4926 -0.7122 16 6 -4.4415 7.8012 -1.2995 17 1 -4.5373 7.7791 -2.3750 18 6 -5.5329 8.1425 -0.5124 19 7 -5.3535 8.5026 0.7408 20 14 -7.2560 8.0905 -1.2317 21 1 -7.5604 6.7106 -1.6883 22 1 -8.2379 8.4973 -0.1945 23 1 -7.3395 9.0229 -2.3844 24 6 -3.1978 6.9308 0.6446 25 6 -2.3835 5.6336 0.6139 26 6 -3.1160 4.5906 -0.2325 27 6 -2.2106 5.1046 2.0392 28 7 1.3254 2.3174 0.0055 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 4.0254 0.3758 -0.0016 33 1 3.8186 4.5284 0.0005 34 1 -0.6588 3.8191 0.0018 35 1 -0.1987 6.5875 -1.8770 36 1 -1.7118 5.6601 -2.0184 37 1 -1.4072 8.4940 -0.9223 38 1 -2.1892 8.0221 -2.4530 39 1 -6.1161 8.7407 1.2909 40 1 -4.2107 6.7184 0.9866 41 1 -2.7254 7.6429 1.3214 42 1 -2.5348 3.6688 -0.2564 43 1 -4.0953 4.3920 0.2029 44 1 -3.2399 4.9685 -1.2474 45 1 -1.6898 5.8484 2.6421 46 1 -3.1901 4.9059 2.4742 47 1 -1.6290 4.1830 2.0167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941074789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:52 Heat of formation + Delta-G solvation = 0.546747 kcal Electronic energy + Delta-G solvation = -29955.327905 eV Core-core repulsion = 25946.616542 eV Total energy + Delta-G solvation = -4008.711363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.76515 -40.00188 -38.82134 -37.99237 -34.86166 -34.43248 -32.83285 -32.04448 -31.47760 -29.45880 -27.99580 -26.80692 -26.19364 -25.85200 -24.72495 -24.00906 -22.44445 -20.79012 -20.57721 -19.16531 -18.61703 -17.94610 -17.16281 -17.06073 -16.69043 -16.33538 -15.75530 -15.17528 -14.94578 -14.83822 -14.39333 -14.11723 -13.96296 -13.62866 -13.44026 -13.33580 -13.19845 -12.73005 -12.49236 -12.35199 -12.03975 -11.95618 -11.68062 -11.54151 -11.38937 -11.27238 -11.09412 -10.89875 -10.76461 -10.62676 -10.50017 -10.24187 -10.14098 -10.00421 -9.73446 -9.64810 -9.40136 -9.17431 -8.74508 -8.47236 -6.70210 -5.81687 -3.23169 0.06209 0.68357 2.46592 2.59306 2.97569 3.36222 3.42456 3.43205 3.47664 3.57425 3.91116 4.06142 4.47189 4.72477 4.79085 4.90876 4.94279 4.99658 5.15147 5.24473 5.26987 5.37854 5.51997 5.54603 5.65994 5.81977 5.91068 6.04198 6.05919 6.16203 6.27150 6.36523 6.40799 6.44071 6.53250 6.59203 6.66598 6.67116 6.79036 6.87251 6.94706 7.00777 7.21555 7.28376 7.55511 7.64332 7.77572 8.16458 8.42039 9.18447 9.81685 10.38460 11.27031 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.002997 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.109728 B = 9339.526154 C =10038.696311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.298 6.298 3 C 0.274 3.726 4 C 0.063 3.937 5 N -0.405 5.405 6 C 0.064 3.936 7 C 0.081 3.919 8 C 0.567 3.433 9 O -0.525 6.525 10 N -0.694 5.694 11 C 0.160 3.840 12 H 0.085 0.915 13 C -0.143 4.143 14 C 0.148 3.852 15 N -0.589 5.589 16 C -0.251 4.251 17 H 0.065 0.935 18 C 0.004 3.996 19 N -0.902 5.902 20 Si 0.900 3.100 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.187 3.813 25 C -0.097 4.097 26 C -0.127 4.127 27 C -0.135 4.135 28 N -0.474 5.474 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.182 0.818 33 H 0.187 0.813 34 H 0.405 0.595 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.021 0.979 38 H 0.057 0.943 39 H 0.254 0.746 40 H 0.094 0.906 41 H 0.020 0.980 42 H 0.029 0.971 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.051 0.949 46 H 0.056 0.944 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.009 -16.830 0.199 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.203 6.203 3 C 0.089 3.911 4 C -0.102 4.102 5 N -0.119 5.119 6 C -0.094 4.094 7 C -0.059 4.059 8 C 0.349 3.651 9 O -0.401 6.401 10 N -0.344 5.344 11 C 0.057 3.943 12 H 0.103 0.897 13 C -0.183 4.183 14 C 0.021 3.979 15 N -0.311 5.311 16 C -0.381 4.381 17 H 0.083 0.917 18 C -0.195 4.195 19 N -0.546 5.546 20 Si 0.730 3.270 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.060 3.940 25 C -0.099 4.099 26 C -0.185 4.185 27 C -0.193 4.193 28 N -0.208 5.208 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.199 0.801 33 H 0.204 0.796 34 H 0.242 0.758 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.112 0.888 41 H 0.038 0.962 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.309 -16.189 0.321 20.960 hybrid contribution -1.449 -0.460 -0.281 1.546 sum 11.859 -16.649 0.040 20.441 Atomic orbital electron populations 1.23024 0.76353 1.03757 1.03025 1.86282 1.23581 1.23078 1.87360 1.20972 0.91089 0.85410 0.93593 1.23225 0.89655 0.97885 0.99422 1.68638 1.38023 0.97660 1.07547 1.23675 0.90732 0.98628 0.96383 1.22152 0.93612 0.91615 0.98540 1.17640 0.82867 0.86630 0.77940 1.90822 1.71336 1.27795 1.50162 1.46241 1.05083 1.11458 1.71656 1.21153 0.90825 0.84765 0.97571 0.89722 1.22459 0.99882 1.00433 0.95534 1.20879 0.87746 0.92636 0.96687 1.44043 1.00785 1.71799 1.14476 1.19115 0.87063 1.40503 0.91404 0.91720 1.25014 0.98787 0.99092 0.96577 1.70015 1.29587 1.47523 1.07505 0.86404 0.84520 0.77956 0.78101 1.21071 1.21681 1.20922 1.20819 0.99286 0.87699 0.86165 1.21580 0.94031 1.00250 0.94053 1.21749 0.99160 0.95913 1.01632 1.21771 1.01259 0.99832 0.96393 1.67980 1.40099 0.98144 1.14530 0.91777 0.87946 0.91783 0.80115 0.79597 0.75845 0.92668 0.91770 0.96127 0.92486 0.93564 0.88827 0.96186 0.95192 0.92845 0.91050 0.92997 0.92492 0.93886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.39 101.05 1.05 1.28 16 2 O -0.30 -2.62 10.49 -18.70 -0.20 -2.82 16 3 C 0.27 2.75 7.50 -16.94 -0.13 2.62 16 4 C 0.06 0.57 11.18 -17.03 -0.19 0.38 16 5 N -0.40 -4.30 10.48 -12.58 -0.13 -4.43 16 6 C 0.06 0.72 10.76 -17.03 -0.18 0.54 16 7 C 0.08 1.01 6.75 -82.86 -0.56 0.45 16 8 C 0.57 8.34 7.78 -12.20 -0.09 8.25 16 9 O -0.53 -9.09 16.00 5.35 0.09 -9.01 16 10 N -0.69 -9.98 4.28 -54.62 -0.23 -10.22 16 11 C 0.16 2.70 1.57 -67.89 -0.11 2.59 16 12 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 13 C -0.14 -2.52 5.31 -26.61 -0.14 -2.66 16 14 C 0.15 3.05 6.52 -3.70 -0.02 3.03 16 15 N -0.59 -14.01 2.43 -172.31 -0.42 -14.43 16 16 C -0.25 -6.60 9.58 -15.06 -0.14 -6.75 16 17 H 0.07 1.68 7.89 -52.49 -0.41 1.27 16 18 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 19 N -0.90 -25.35 11.19 55.49 0.62 -24.72 16 20 Si 0.90 21.12 29.59 -169.99 -5.03 16.09 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 C 0.19 4.19 3.99 -3.71 -0.01 4.17 16 25 C -0.10 -1.69 0.56 -154.39 -0.09 -1.77 16 26 C -0.13 -2.10 7.83 37.16 0.29 -1.81 16 27 C -0.13 -2.07 8.31 37.16 0.31 -1.76 16 28 N -0.47 -5.41 8.60 -9.69 -0.08 -5.50 16 29 H 0.06 0.47 8.11 -51.93 -0.42 0.05 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 32 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.19 1.94 7.64 -52.49 -0.40 1.54 16 34 H 0.40 5.30 6.01 -40.82 -0.25 5.05 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.12 6.34 -51.93 -0.33 0.79 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 1.16 7.93 -51.92 -0.41 0.74 16 39 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.03 0.40 6.58 -51.93 -0.34 0.06 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 1.32 5.97 -51.93 -0.31 1.01 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.04 0.58 7.36 -51.93 -0.38 0.20 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -29.75 376.22 -6.73 -36.48 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.90 Total: 4.31 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -0.11 Total: 8.57 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.25 Total: -59.30 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.11 Total: -11.83 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.75 -6.73 -36.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941074789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.024 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds