Wall clock time and date at job start Tue Mar 31 2020 19:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.52202 * 2 1 4 4 C 1.53184 * 109.50033 * 239.91306 * 2 1 3 5 5 N 1.46923 * 108.77625 * 185.41403 * 4 2 1 6 6 C 1.36938 * 120.63067 * 233.58853 * 5 4 2 7 7 H 1.08002 * 120.00042 * 151.85000 * 6 5 4 8 8 C 1.38807 * 120.00355 * 331.84455 * 6 5 4 9 9 N 1.31627 * 119.99768 * 343.06807 * 8 6 5 10 10 Si 1.86798 * 120.00530 * 163.07082 * 8 6 5 11 11 H 1.48505 * 109.47179 * 89.99748 * 10 8 6 12 12 H 1.48493 * 109.47442 * 210.00011 * 10 8 6 13 13 H 1.48500 * 109.46944 * 330.00188 * 10 8 6 14 14 C 1.46929 * 118.73940 * 53.60935 * 5 4 2 15 15 C 1.53193 * 108.77345 * 306.39186 * 14 5 4 16 16 C 1.53040 * 109.31347 * 54.63402 * 15 14 5 17 17 H 1.09000 * 109.45808 * 58.64039 * 16 15 14 18 18 N 1.46496 * 109.45909 * 178.61375 * 16 15 14 19 19 C 1.34784 * 120.00001 * 274.99631 * 18 16 15 20 20 O 1.21675 * 119.99772 * 0.02562 * 19 18 16 21 21 C 1.46809 * 119.99759 * 180.02562 * 19 18 16 22 22 C 1.36351 * 125.84837 * 180.02562 * 21 19 18 23 23 C 1.41301 * 107.01561 * 179.97438 * 22 21 19 24 24 C 1.47387 * 126.46758 * 179.97438 * 23 22 21 25 25 N 1.34770 * 120.00268 * 180.02562 * 24 23 22 26 26 O 1.21616 * 119.99656 * 359.97438 * 24 23 22 27 27 C 1.38207 * 107.06920 * 0.02562 * 23 22 21 28 28 N 1.34259 * 108.40180 * 359.97438 * 27 23 22 29 29 H 0.96995 * 125.39763 * 180.02562 * 28 27 23 30 30 H 1.08991 * 109.47237 * 299.92582 * 1 2 3 31 31 H 1.09000 * 109.46720 * 59.92490 * 1 2 3 32 32 H 1.08996 * 109.46946 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46828 * 180.08276 * 3 2 1 34 34 H 1.08999 * 109.46515 * 300.07444 * 3 2 1 35 35 H 1.08998 * 109.47573 * 60.07531 * 3 2 1 36 36 H 1.09000 * 109.58580 * 65.62816 * 4 2 1 37 37 H 1.09002 * 109.70482 * 305.27020 * 4 2 1 38 38 H 0.96999 * 119.99948 * 180.02562 * 9 8 6 39 39 H 1.08997 * 109.58608 * 186.60480 * 14 5 4 40 40 H 1.08997 * 109.70347 * 66.25005 * 14 5 4 41 41 H 1.08995 * 109.50021 * 294.68200 * 15 14 5 42 42 H 1.09002 * 109.52407 * 174.60219 * 15 14 5 43 43 H 0.97001 * 120.00499 * 95.00156 * 18 16 15 44 44 H 1.08006 * 126.49565 * 359.70043 * 22 21 19 45 45 H 0.97001 * 120.00154 * 359.97438 * 25 24 23 46 46 H 0.97002 * 120.00237 * 179.97438 * 25 24 23 47 47 H 1.08009 * 125.80027 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0414 -0.7239 -1.2494 5 7 3.5047 -0.8292 -1.1694 6 6 4.2937 -0.3794 -2.1942 7 1 5.2963 -0.0328 -1.9918 8 6 3.8049 -0.3691 -3.4934 9 7 2.7416 -1.0809 -3.8022 10 14 4.6561 0.6548 -4.8036 11 1 5.7027 -0.1627 -5.4682 12 1 3.6592 1.0971 -5.8113 13 1 5.2832 1.8438 -4.1726 14 6 4.1053 -1.4267 0.0311 15 6 3.5708 -0.6948 1.2662 16 6 2.0408 -0.7229 1.2485 17 1 1.6967 -1.7571 1.2353 18 7 1.5265 -0.0527 2.4453 19 6 1.3970 -0.7383 3.5985 20 8 1.7078 -1.9137 3.6456 21 6 0.8811 -0.0667 4.7977 22 6 0.7026 -0.6423 6.0208 23 6 0.1910 0.3579 6.8778 24 6 -0.1576 0.1979 8.3009 25 7 -0.6389 1.2455 8.9988 26 8 -0.0118 -0.8799 8.8451 27 6 0.0781 1.5144 6.1295 28 7 0.4945 1.2532 4.8802 29 1 0.5194 1.8924 4.1511 30 1 -0.3633 0.5126 0.8906 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1313 1.4410 -0.0015 34 1 1.6773 1.9565 -0.8893 35 1 1.6796 1.9559 0.8906 36 1 1.7639 -0.1581 -2.1388 37 1 1.6055 -1.7217 -1.3003 38 1 2.4003 -1.0740 -4.7101 39 1 5.1896 -1.3245 -0.0134 40 1 3.8398 -2.4822 0.0884 41 1 3.9158 0.3390 1.2542 42 1 3.9333 -1.1889 2.1677 43 1 1.2790 0.8845 2.4079 44 1 0.9085 -1.6695 6.2836 45 1 -0.7556 2.1051 8.5646 46 1 -0.8687 1.1401 9.9353 47 1 -0.2830 2.4668 6.4890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941128897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:55 Heat of formation + Delta-G solvation = -14.480541 kcal Electronic energy + Delta-G solvation = -29332.469158 eV Core-core repulsion = 25323.106163 eV Total energy + Delta-G solvation = -4009.362995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.86242 -39.87678 -39.02016 -37.93245 -34.69997 -33.95836 -33.00632 -32.10639 -31.50908 -30.11353 -29.05849 -26.87497 -26.01262 -25.30388 -23.70466 -23.19749 -21.72684 -20.65399 -20.42339 -19.82752 -19.48512 -17.98835 -17.26400 -16.74976 -16.57753 -16.03346 -15.60054 -15.45694 -14.91005 -14.70409 -14.30178 -14.07617 -13.93877 -13.85672 -13.62731 -13.49317 -13.40098 -13.20030 -12.73950 -12.62351 -12.37041 -11.74349 -11.57816 -11.38812 -11.12390 -10.93607 -10.73045 -10.65349 -10.36744 -10.32252 -10.17278 -10.09469 -9.99520 -9.97491 -9.73021 -9.49742 -9.43958 -8.88959 -8.61476 -8.49025 -6.71091 -5.83694 -3.25644 1.16024 1.59146 2.59530 3.10594 3.16567 3.33342 3.40868 3.41347 3.42134 3.42371 4.40369 4.45193 4.57606 4.71071 4.92290 5.11928 5.21256 5.33883 5.47574 5.50524 5.51889 5.69148 5.79232 5.83678 5.97131 6.00210 6.12355 6.13603 6.21753 6.32805 6.37500 6.39558 6.44133 6.50656 6.53273 6.63666 6.77566 6.81661 6.85749 6.92252 6.98057 7.09023 7.25699 7.52138 7.61276 7.75879 8.07315 8.22455 8.40368 9.16574 9.79706 10.36810 11.25088 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.030811 B = 0.002397 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.543644 B =11679.335305 C =11923.621372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C -0.126 4.126 4 C 0.186 3.814 5 N -0.589 5.589 6 C -0.250 4.250 7 H 0.065 0.935 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.900 3.100 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.147 3.853 15 C -0.143 4.143 16 C 0.164 3.836 17 H 0.084 0.916 18 N -0.719 5.719 19 C 0.582 3.418 20 O -0.523 6.523 21 C -0.050 4.050 22 C -0.048 4.048 23 C -0.239 4.239 24 C 0.594 3.406 25 N -0.857 5.857 26 O -0.544 6.544 27 C 0.068 3.932 28 N -0.523 5.523 29 H 0.421 0.579 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.025 0.975 36 H 0.093 0.907 37 H 0.021 0.979 38 H 0.254 0.746 39 H 0.056 0.944 40 H 0.021 0.979 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.388 0.612 44 H 0.159 0.841 45 H 0.397 0.603 46 H 0.403 0.597 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.639 11.765 18.731 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 C -0.183 4.183 4 C 0.059 3.941 5 N -0.311 5.311 6 C -0.380 4.380 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.546 5.546 10 Si 0.730 3.270 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.020 3.980 15 C -0.183 4.183 16 C 0.061 3.939 17 H 0.102 0.898 18 N -0.369 5.369 19 C 0.368 3.632 20 O -0.399 6.399 21 C -0.162 4.162 22 C -0.074 4.074 23 C -0.249 4.249 24 C 0.381 3.619 25 N -0.420 5.420 26 O -0.421 6.421 27 C -0.074 4.074 28 N -0.117 5.117 29 H 0.260 0.740 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.111 0.889 37 H 0.039 0.961 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.039 0.961 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.222 0.778 44 H 0.177 0.823 45 H 0.225 0.775 46 H 0.234 0.766 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.267 10.143 18.565 22.713 hybrid contribution 0.021 1.850 -0.886 2.051 sum -8.245 11.993 17.679 22.899 Atomic orbital electron populations 1.21762 0.95387 1.01503 1.00500 1.21580 0.94433 0.96753 0.97193 1.21744 1.02750 0.94696 0.99140 1.20820 0.83185 0.96864 0.93202 1.44048 1.01604 1.69228 1.16241 1.19135 0.97924 1.35261 0.85674 0.91724 1.25036 0.98499 0.99012 0.96985 1.70022 1.25637 1.40201 1.18765 0.86342 0.78707 0.80350 0.81644 1.21392 1.21610 1.20546 1.20880 0.96715 0.94357 0.86095 1.22454 0.94603 1.01597 0.99658 1.21067 0.93959 0.96918 0.81957 0.89752 1.46250 1.66160 1.13857 1.10678 1.17057 0.78205 0.86326 0.81608 1.90871 1.50084 1.14984 1.83945 1.20369 1.14044 0.84301 0.97445 1.21101 0.96999 0.99754 0.89527 1.19574 1.15870 0.94978 0.94484 1.17406 0.75681 0.83560 0.85251 1.43678 1.69621 1.13406 1.15287 1.90840 1.53946 1.26393 1.70950 1.22358 1.01321 0.99467 0.84263 1.41782 1.48343 1.10481 1.11119 0.74047 0.94163 0.92499 0.92877 0.90948 0.92809 0.95615 0.88880 0.96116 0.93605 0.92511 0.96117 0.91904 0.92602 0.77790 0.82348 0.77466 0.76632 0.80333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.31 37.16 0.31 -1.63 16 2 C -0.10 -1.62 0.56 -154.39 -0.09 -1.71 16 3 C -0.13 -1.95 7.83 37.16 0.29 -1.65 16 4 C 0.19 4.12 3.98 -3.72 -0.01 4.10 16 5 N -0.59 -13.92 2.43 -172.33 -0.42 -14.33 16 6 C -0.25 -6.54 9.58 -15.06 -0.14 -6.68 16 7 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 8 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 9 N -0.90 -25.25 11.20 55.49 0.62 -24.62 16 10 Si 0.90 20.97 29.59 -169.99 -5.03 15.94 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.15 3.03 6.52 -3.71 -0.02 3.01 16 15 C -0.14 -2.49 5.31 -26.61 -0.14 -2.63 16 16 C 0.16 2.69 1.57 -67.89 -0.11 2.58 16 17 H 0.08 1.60 7.57 -51.93 -0.39 1.21 16 18 N -0.72 -9.31 4.28 -55.03 -0.24 -9.54 16 19 C 0.58 8.40 7.76 -12.79 -0.10 8.30 16 20 O -0.52 -9.75 16.52 5.21 0.09 -9.66 16 21 C -0.05 -0.57 6.99 -82.41 -0.58 -1.15 16 22 C -0.05 -0.60 10.37 -39.10 -0.41 -1.01 16 23 C -0.24 -2.31 6.13 -105.02 -0.64 -2.96 16 24 C 0.59 6.13 8.09 -12.54 -0.10 6.03 16 25 N -0.86 -4.38 8.86 30.42 0.27 -4.11 16 26 O -0.54 -8.22 17.76 5.26 0.09 -8.13 16 27 C 0.07 0.39 11.43 -16.50 -0.19 0.20 16 28 N -0.52 -3.54 5.91 -9.30 -0.05 -3.59 16 29 H 0.42 1.63 8.13 -40.82 -0.33 1.30 16 30 H 0.04 0.48 7.36 -51.93 -0.38 0.10 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.28 5.97 -51.93 -0.31 0.97 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.02 0.30 6.58 -51.93 -0.34 -0.05 16 36 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 1.07 6.34 -51.93 -0.33 0.74 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.39 3.87 5.74 -40.82 -0.23 3.63 16 44 H 0.16 2.20 8.06 -52.48 -0.42 1.78 16 45 H 0.40 0.63 7.74 -40.82 -0.32 0.31 16 46 H 0.40 1.67 8.93 -40.82 -0.36 1.31 16 47 H 0.18 0.14 7.44 -52.48 -0.39 -0.25 16 LS Contribution 376.10 15.07 5.67 5.67 Total: -1.00 -35.21 376.10 -7.65 -42.86 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.63 Total: 4.74 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -2.02 Total: 4.79 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.18 Total: -56.20 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.18 Total: -17.79 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.21 -7.65 -42.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941128897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.379 kcal (2) G-P(sol) polarization free energy of solvation -35.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds