Wall clock time and date at job start Tue Mar 31 2020 19:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.52202 * 2 1 4 4 C 1.53184 * 109.50033 * 239.91306 * 2 1 3 5 5 N 1.46923 * 108.77625 * 185.41403 * 4 2 1 6 6 C 1.36938 * 120.63067 * 233.58853 * 5 4 2 7 7 H 1.08002 * 120.00042 * 151.85000 * 6 5 4 8 8 C 1.38807 * 120.00355 * 331.84455 * 6 5 4 9 9 N 1.31627 * 119.99768 * 343.06807 * 8 6 5 10 10 Si 1.86798 * 120.00530 * 163.07082 * 8 6 5 11 11 H 1.48505 * 109.47179 * 89.99748 * 10 8 6 12 12 H 1.48493 * 109.47442 * 210.00011 * 10 8 6 13 13 H 1.48500 * 109.46944 * 330.00188 * 10 8 6 14 14 C 1.46929 * 118.73940 * 53.60935 * 5 4 2 15 15 C 1.53193 * 108.77345 * 306.39186 * 14 5 4 16 16 C 1.53040 * 109.31347 * 54.63402 * 15 14 5 17 17 H 1.09000 * 109.45808 * 58.64039 * 16 15 14 18 18 N 1.46496 * 109.45909 * 178.61375 * 16 15 14 19 19 C 1.34784 * 120.00001 * 274.99631 * 18 16 15 20 20 O 1.21675 * 119.99772 * 0.02562 * 19 18 16 21 21 C 1.46809 * 119.99759 * 180.02562 * 19 18 16 22 22 C 1.36351 * 125.84837 * 180.02562 * 21 19 18 23 23 C 1.41301 * 107.01561 * 179.97438 * 22 21 19 24 24 C 1.47387 * 126.46758 * 179.97438 * 23 22 21 25 25 N 1.34770 * 120.00268 * 180.02562 * 24 23 22 26 26 O 1.21616 * 119.99656 * 359.97438 * 24 23 22 27 27 C 1.38207 * 107.06920 * 0.02562 * 23 22 21 28 28 N 1.34259 * 108.40180 * 359.97438 * 27 23 22 29 29 H 0.96995 * 125.39763 * 180.02562 * 28 27 23 30 30 H 1.08991 * 109.47237 * 299.92582 * 1 2 3 31 31 H 1.09000 * 109.46720 * 59.92490 * 1 2 3 32 32 H 1.08996 * 109.46946 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46828 * 180.08276 * 3 2 1 34 34 H 1.08999 * 109.46515 * 300.07444 * 3 2 1 35 35 H 1.08998 * 109.47573 * 60.07531 * 3 2 1 36 36 H 1.09000 * 109.58580 * 65.62816 * 4 2 1 37 37 H 1.09002 * 109.70482 * 305.27020 * 4 2 1 38 38 H 0.96999 * 119.99948 * 180.02562 * 9 8 6 39 39 H 1.08997 * 109.58608 * 186.60480 * 14 5 4 40 40 H 1.08997 * 109.70347 * 66.25005 * 14 5 4 41 41 H 1.08995 * 109.50021 * 294.68200 * 15 14 5 42 42 H 1.09002 * 109.52407 * 174.60219 * 15 14 5 43 43 H 0.97001 * 120.00499 * 95.00156 * 18 16 15 44 44 H 1.08006 * 126.49565 * 359.70043 * 22 21 19 45 45 H 0.97001 * 120.00154 * 359.97438 * 25 24 23 46 46 H 0.97002 * 120.00237 * 179.97438 * 25 24 23 47 47 H 1.08009 * 125.80027 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0414 -0.7239 -1.2494 5 7 3.5047 -0.8292 -1.1694 6 6 4.2937 -0.3794 -2.1942 7 1 5.2963 -0.0328 -1.9918 8 6 3.8049 -0.3691 -3.4934 9 7 2.7416 -1.0809 -3.8022 10 14 4.6561 0.6548 -4.8036 11 1 5.7027 -0.1627 -5.4682 12 1 3.6592 1.0971 -5.8113 13 1 5.2832 1.8438 -4.1726 14 6 4.1053 -1.4267 0.0311 15 6 3.5708 -0.6948 1.2662 16 6 2.0408 -0.7229 1.2485 17 1 1.6967 -1.7571 1.2353 18 7 1.5265 -0.0527 2.4453 19 6 1.3970 -0.7383 3.5985 20 8 1.7078 -1.9137 3.6456 21 6 0.8811 -0.0667 4.7977 22 6 0.7026 -0.6423 6.0208 23 6 0.1910 0.3579 6.8778 24 6 -0.1576 0.1979 8.3009 25 7 -0.6389 1.2455 8.9988 26 8 -0.0118 -0.8799 8.8451 27 6 0.0781 1.5144 6.1295 28 7 0.4945 1.2532 4.8802 29 1 0.5194 1.8924 4.1511 30 1 -0.3633 0.5126 0.8906 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1313 1.4410 -0.0015 34 1 1.6773 1.9565 -0.8893 35 1 1.6796 1.9559 0.8906 36 1 1.7639 -0.1581 -2.1388 37 1 1.6055 -1.7217 -1.3003 38 1 2.4003 -1.0740 -4.7101 39 1 5.1896 -1.3245 -0.0134 40 1 3.8398 -2.4822 0.0884 41 1 3.9158 0.3390 1.2542 42 1 3.9333 -1.1889 2.1677 43 1 1.2790 0.8845 2.4079 44 1 0.9085 -1.6695 6.2836 45 1 -0.7556 2.1051 8.5646 46 1 -0.8687 1.1401 9.9353 47 1 -0.2830 2.4668 6.4890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941128897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:54 Heat of formation + Delta-G solvation = -42.780729 kcal Electronic energy + Delta-G solvation = -29333.696347 eV Core-core repulsion = 25323.106163 eV Total energy + Delta-G solvation = -4010.590184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.62832 -41.14227 -39.87798 -39.26252 -36.32874 -34.65583 -34.36418 -33.85365 -32.28688 -31.49428 -30.21167 -28.14575 -27.61824 -26.92670 -24.77196 -24.21364 -23.04332 -22.30709 -21.29202 -20.66339 -20.39460 -19.41088 -18.64344 -17.78328 -17.35441 -17.10395 -16.79861 -16.63870 -16.39401 -15.70942 -15.69253 -15.39346 -15.23395 -15.00509 -14.93805 -14.67570 -14.60442 -14.38480 -14.17834 -13.84922 -13.37176 -13.26039 -13.06144 -12.89344 -12.72597 -12.60968 -12.44246 -12.34099 -11.93889 -11.83658 -11.67737 -11.38501 -11.31906 -11.20075 -11.03837 -10.61318 -10.53460 -10.19773 -10.09701 -9.38167 -8.67426 -7.86210 -5.31368 0.40755 0.79217 1.47628 1.49384 1.58589 1.93372 2.08327 2.20591 2.52193 2.59150 2.79951 3.29236 3.62381 3.69345 3.82553 3.91157 3.96684 4.08886 4.10034 4.29686 4.33242 4.43577 4.57164 4.63558 4.77522 4.83042 4.86383 4.90493 4.94482 4.97762 5.03478 5.09619 5.22614 5.29575 5.32446 5.37052 5.43288 5.47306 5.57786 5.61965 5.71212 5.75817 6.00528 6.33954 6.40143 6.52776 6.64230 7.13688 7.16008 7.48929 7.85311 8.38794 9.20579 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.030811 B = 0.002397 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.543644 B =11679.335305 C =11923.621372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C -0.120 4.120 4 C 0.193 3.807 5 N -0.602 5.602 6 C -0.256 4.256 7 H 0.067 0.933 8 C -0.048 4.048 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.290 1.290 12 H -0.293 1.293 13 H -0.267 1.267 14 C 0.143 3.857 15 C -0.128 4.128 16 C 0.176 3.824 17 H 0.052 0.948 18 N -0.700 5.700 19 C 0.584 3.416 20 O -0.576 6.576 21 C -0.067 4.067 22 C -0.072 4.072 23 C -0.270 4.270 24 C 0.590 3.410 25 N -0.828 5.828 26 O -0.608 6.608 27 C 0.128 3.872 28 N -0.503 5.503 29 H 0.441 0.559 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.065 0.935 37 H -0.017 1.017 38 H 0.249 0.751 39 H 0.058 0.942 40 H 0.001 0.999 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.408 0.592 44 H 0.124 0.876 45 H 0.419 0.581 46 H 0.410 0.590 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.705 16.724 20.429 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.088 4.088 3 C -0.178 4.178 4 C 0.067 3.933 5 N -0.325 5.325 6 C -0.386 4.386 7 H 0.084 0.916 8 C -0.243 4.243 9 N -0.581 5.581 10 Si 0.792 3.208 11 H -0.217 1.217 12 H -0.219 1.219 13 H -0.192 1.192 14 C 0.016 3.984 15 C -0.168 4.168 16 C 0.071 3.929 17 H 0.070 0.930 18 N -0.352 5.352 19 C 0.372 3.628 20 O -0.456 6.456 21 C -0.178 4.178 22 C -0.098 4.098 23 C -0.279 4.279 24 C 0.377 3.623 25 N -0.392 5.392 26 O -0.491 6.491 27 C -0.017 4.017 28 N -0.099 5.099 29 H 0.284 0.716 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.001 0.999 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.019 0.981 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.246 0.754 44 H 0.142 0.858 45 H 0.251 0.749 46 H 0.242 0.758 47 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -9.351 15.222 20.268 27.017 hybrid contribution 0.342 0.293 -1.332 1.406 sum -9.009 15.515 18.935 26.085 Atomic orbital electron populations 1.21731 0.93299 1.01269 1.02412 1.21331 0.96006 0.97162 0.94270 1.21679 1.01393 0.93413 1.01277 1.20627 0.82522 0.95120 0.95030 1.44270 1.02135 1.69540 1.16528 1.19442 0.98237 1.34475 0.86432 0.91568 1.25759 0.99413 1.00252 0.98910 1.70190 1.27269 1.41871 1.18801 0.85331 0.77395 0.79062 0.78969 1.21725 1.21902 1.19205 1.20959 0.96910 0.93729 0.86768 1.22249 0.95285 1.01731 0.97538 1.20631 0.93229 0.95704 0.83291 0.92971 1.45837 1.65685 1.14527 1.09129 1.17414 0.77234 0.85735 0.82401 1.90850 1.52385 1.17523 1.84815 1.19602 1.16254 0.86465 0.95459 1.21042 0.98166 0.99386 0.91237 1.19572 1.17907 0.95930 0.94528 1.17604 0.75401 0.83586 0.85665 1.43405 1.67273 1.13060 1.15428 1.90813 1.56998 1.29091 1.72171 1.23223 0.96125 0.99918 0.82401 1.41701 1.47090 1.08780 1.12316 0.71643 0.90390 0.92331 0.94329 0.93008 0.93487 0.90646 0.91673 0.99855 0.94144 0.92375 0.98058 0.90400 0.92572 0.75406 0.85809 0.74890 0.75788 0.73854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 8.31 71.98 0.60 -2.95 16 2 C -0.09 -2.80 0.56 -52.10 -0.03 -2.83 16 3 C -0.12 -3.38 7.83 71.98 0.56 -2.82 16 4 C 0.19 8.91 3.98 86.36 0.34 9.25 16 5 N -0.60 -29.35 2.43 -699.12 -1.70 -31.05 16 6 C -0.26 -13.59 9.58 84.03 0.81 -12.79 16 7 H 0.07 3.44 7.89 -2.91 -0.02 3.42 16 8 C -0.05 -2.61 4.92 84.86 0.42 -2.19 16 9 N -0.94 -54.26 11.20 21.65 0.24 -54.01 16 10 Si 0.96 43.60 29.59 68.60 2.03 45.63 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 12 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 14 C 0.14 6.12 6.52 86.36 0.56 6.68 16 15 C -0.13 -4.44 5.31 30.67 0.16 -4.28 16 16 C 0.18 5.72 1.57 45.02 0.07 5.79 16 17 H 0.05 2.07 7.57 -2.39 -0.02 2.06 16 18 N -0.70 -16.59 4.28 -446.25 -1.91 -18.50 16 19 C 0.58 16.44 7.76 86.48 0.67 17.11 16 20 O -0.58 -22.44 16.52 -4.27 -0.07 -22.51 16 21 C -0.07 -1.40 6.99 40.01 0.28 -1.12 16 22 C -0.07 -1.79 10.37 22.58 0.23 -1.56 16 23 C -0.27 -4.57 6.13 -20.12 -0.12 -4.69 16 24 C 0.59 11.25 8.09 86.65 0.70 11.95 16 25 N -0.83 -5.53 8.86 -175.91 -1.56 -7.09 16 26 O -0.61 -18.94 17.76 -4.08 -0.07 -19.01 16 27 C 0.13 0.69 11.43 84.31 0.96 1.65 16 28 N -0.50 -4.19 5.91 -183.35 -1.08 -5.28 16 29 H 0.44 0.42 8.13 -92.71 -0.75 -0.34 16 30 H 0.08 1.55 7.36 -2.39 -0.02 1.53 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.70 5.97 -2.39 -0.01 1.68 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.35 6.58 -2.39 -0.02 1.34 16 36 H 0.06 3.37 6.06 -2.39 -0.01 3.36 16 37 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 38 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 39 H 0.06 2.42 7.93 -2.39 -0.02 2.41 16 40 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.08 2.50 6.34 -2.39 -0.02 2.48 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.41 6.23 5.74 -92.71 -0.53 5.70 16 44 H 0.12 3.86 8.06 -2.91 -0.02 3.83 16 45 H 0.42 -1.04 7.74 -92.71 -0.72 -1.76 16 46 H 0.41 2.21 8.93 -92.71 -0.83 1.38 16 47 H 0.25 -1.90 7.44 -2.91 -0.02 -1.93 16 Total: -1.00 -87.01 376.10 0.32 -86.70 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -1.78 Total: 7.91 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 6.22 Total: 17.22 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -6.01 Total: -115.93 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -0.14 Total: -41.52 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -87.01 0.32 -86.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941128897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.917 kcal (2) G-P(sol) polarization free energy of solvation -87.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds