Wall clock time and date at job start Tue Mar 31 2020 19:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35292 * 116.99645 * 2 1 4 4 N 1.32469 * 119.02440 * 0.27278 * 3 2 1 5 5 C 1.32024 * 120.91345 * 180.24240 * 4 3 2 6 6 C 1.40056 * 118.98575 * 359.49360 * 5 4 3 7 7 C 1.47629 * 120.87630 * 180.27677 * 6 5 4 8 8 O 1.21572 * 120.00471 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99674 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00316 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.45906 * 325.02494 * 10 9 7 12 12 C 1.53034 * 109.45960 * 84.99602 * 10 9 7 13 13 C 1.53192 * 109.31585 * 181.38912 * 12 10 9 14 14 N 1.46926 * 108.77360 * 305.36781 * 13 12 10 15 15 C 1.36941 * 120.63251 * 233.62627 * 14 13 12 16 16 H 1.07996 * 120.00060 * 151.82921 * 15 14 13 17 17 C 1.38809 * 119.99929 * 331.83024 * 15 14 13 18 18 N 1.31617 * 120.00014 * 343.06921 * 17 15 14 19 19 Si 1.86799 * 120.00185 * 163.06968 * 17 15 14 20 20 H 1.48499 * 109.47147 * 59.99991 * 19 17 15 21 21 H 1.48498 * 109.47302 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47031 * 299.99885 * 19 17 15 23 23 C 1.46925 * 118.73976 * 53.60730 * 14 13 12 24 24 C 1.53039 * 109.46173 * 205.06873 * 10 9 7 25 25 C 1.53004 * 109.49628 * 298.56311 * 24 10 9 26 26 C 1.52997 * 109.50130 * 58.66376 * 24 10 9 27 27 C 1.40057 * 118.23927 * 0.24846 * 6 5 4 28 28 N 1.32016 * 118.98752 * 0.02562 * 27 6 5 29 29 H 1.09004 * 109.46941 * 59.99818 * 1 2 3 30 30 H 1.08994 * 109.46941 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47056 * 300.00060 * 1 2 3 32 32 H 1.08000 * 120.50354 * 179.76808 * 5 4 3 33 33 H 0.97008 * 120.00017 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.50279 * 301.34475 * 12 10 9 35 35 H 1.09002 * 109.49914 * 61.40671 * 12 10 9 36 36 H 1.09003 * 109.58857 * 65.15244 * 13 12 10 37 37 H 1.08997 * 109.59357 * 185.58363 * 13 12 10 38 38 H 0.96997 * 120.00325 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.58885 * 66.17797 * 23 14 13 40 40 H 1.09002 * 109.58547 * 186.46082 * 23 14 13 41 41 H 1.08997 * 109.46901 * 60.00436 * 25 24 10 42 42 H 1.09003 * 109.46865 * 180.02562 * 25 24 10 43 43 H 1.09004 * 109.46817 * 299.99799 * 25 24 10 44 44 H 1.09000 * 109.47099 * 59.99223 * 26 24 10 45 45 H 1.09000 * 109.47452 * 179.97438 * 26 24 10 46 46 H 1.09010 * 109.46659 * 299.99926 * 26 24 10 47 47 H 1.07992 * 120.50707 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0432 1.2055 0.0000 4 7 1.3029 2.3040 0.0055 5 6 1.8631 3.4995 0.0009 6 6 3.2604 3.5942 0.0009 7 6 3.9306 4.9097 0.0020 8 8 3.2684 5.9293 0.0025 9 7 5.2764 4.9802 0.0025 10 6 5.9416 6.2855 0.0030 11 1 5.3563 6.9915 -0.5862 12 6 6.0604 6.7966 1.4406 13 6 6.7250 8.1768 1.4344 14 7 8.0053 8.0820 0.7198 15 6 9.1658 8.5094 1.3078 16 1 10.1083 8.0603 1.0317 17 6 9.1308 9.5200 2.2587 18 7 8.0691 10.2912 2.3607 19 14 10.5905 9.7856 3.3937 20 1 11.7965 10.0960 2.5848 21 1 10.3045 10.9177 4.3113 22 1 10.8305 8.5540 4.1879 23 6 8.0169 7.5195 -0.6374 24 6 7.3379 6.1465 -0.6079 25 6 8.1718 5.1824 0.2382 26 6 7.2198 5.6045 -2.0338 27 6 4.0051 2.4080 0.0004 28 7 3.3672 1.2522 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.2530 4.3907 0.0017 33 1 5.8048 4.1666 0.0025 34 1 5.0671 6.8730 1.8829 35 1 6.6661 6.1033 2.0243 36 1 6.0765 8.8924 0.9287 37 1 6.9020 8.5019 2.4596 38 1 8.0444 10.9971 3.0254 39 1 7.4737 8.1813 -1.3120 40 1 9.0462 7.4131 -0.9801 41 1 7.6868 4.2065 0.2613 42 1 9.1663 5.0841 -0.1970 43 1 8.2566 5.5702 1.2534 44 1 6.6267 6.2926 -2.6361 45 1 8.2145 5.5061 -2.4687 46 1 6.7340 4.6289 -2.0125 47 1 5.0846 2.4384 0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941142372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:59 Heat of formation + Delta-G solvation = 6.906618 kcal Electronic energy + Delta-G solvation = -29434.280770 eV Core-core repulsion = 25425.845192 eV Total energy + Delta-G solvation = -4008.435579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.72803 -40.08088 -38.79505 -37.93999 -34.82498 -34.27781 -33.24143 -32.07537 -31.29025 -29.78770 -28.08903 -26.96053 -25.96040 -25.57846 -24.76513 -24.29035 -22.33557 -20.80181 -20.57788 -19.26921 -18.72631 -18.39840 -17.34514 -16.85680 -16.63628 -15.83765 -15.37929 -15.09248 -14.92945 -14.79845 -14.49655 -14.13579 -14.11085 -13.90938 -13.70480 -13.52904 -13.06705 -12.82471 -12.45126 -12.32538 -12.18524 -11.81016 -11.73454 -11.52191 -11.39583 -11.36577 -11.04349 -10.91502 -10.71207 -10.61901 -10.45025 -10.20444 -10.03671 -9.95552 -9.74674 -9.66236 -9.49001 -9.45193 -8.76245 -8.43009 -6.68766 -5.79846 -3.22859 0.20069 0.61660 2.09595 2.73940 3.11920 3.37442 3.43918 3.44162 3.50728 3.57188 4.06843 4.19391 4.44558 4.47751 4.69819 4.79292 4.83937 5.03495 5.12610 5.21109 5.28822 5.34883 5.40991 5.55197 5.55304 5.78455 5.84289 5.90475 6.06303 6.11083 6.19323 6.23649 6.26305 6.37321 6.46727 6.51355 6.63996 6.64821 6.76335 6.78569 6.88122 6.96134 7.35042 7.51530 7.58331 7.66482 7.78405 8.20351 8.43507 9.19559 9.82818 10.39341 11.28579 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023913 B = 0.002518 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.623969 B =11116.296583 C =11352.816281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.286 6.286 3 C 0.512 3.488 4 N -0.570 5.570 5 C 0.248 3.752 6 C -0.277 4.277 7 C 0.569 3.431 8 O -0.531 6.531 9 N -0.713 5.713 10 C 0.164 3.836 11 H 0.084 0.916 12 C -0.150 4.150 13 C 0.174 3.826 14 N -0.588 5.588 15 C -0.253 4.253 16 H 0.065 0.935 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.901 3.099 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.159 3.841 24 C -0.089 4.089 25 C -0.132 4.132 26 C -0.137 4.137 27 C 0.223 3.777 28 N -0.525 5.525 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.188 0.812 33 H 0.393 0.607 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.020 0.980 37 H 0.090 0.910 38 H 0.255 0.745 39 H 0.020 0.980 40 H 0.058 0.942 41 H 0.033 0.967 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.046 0.954 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.261 -18.231 -6.183 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.186 6.186 3 C 0.211 3.789 4 N -0.299 5.299 5 C 0.081 3.919 6 C -0.285 4.285 7 C 0.354 3.646 8 O -0.409 6.409 9 N -0.364 5.364 10 C 0.061 3.939 11 H 0.102 0.898 12 C -0.191 4.191 13 C 0.047 3.953 14 N -0.310 5.310 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.545 5.545 19 Si 0.731 3.269 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.211 1.211 23 C 0.032 3.968 24 C -0.092 4.092 25 C -0.189 4.189 26 C -0.195 4.195 27 C 0.055 3.945 28 N -0.250 5.250 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.204 0.796 33 H 0.228 0.772 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -12.180 -18.578 -6.059 23.026 hybrid contribution 1.138 0.628 0.632 1.446 sum -11.041 -17.949 -5.427 21.761 Atomic orbital electron populations 1.23080 0.75185 1.03846 1.03225 1.86072 1.23791 1.22609 1.86155 1.20971 0.86277 0.85012 0.86651 1.68207 1.40838 0.99021 1.21788 1.23253 0.91442 0.94417 0.82796 1.21741 0.97012 0.96302 1.13444 1.17573 0.82645 0.87355 0.77077 1.90816 1.64601 1.35555 1.49918 1.46257 1.05505 1.10638 1.74018 1.21083 0.92128 0.82490 0.98177 0.89757 1.22647 1.00285 1.01458 0.94665 1.20759 0.85303 0.89742 0.99464 1.44042 1.04625 1.71715 1.10628 1.19094 0.86551 1.13339 1.19265 0.91715 1.25050 0.97323 0.95533 1.01634 1.70017 1.29431 1.19244 1.35790 0.86394 0.82349 0.77261 0.80881 1.20919 1.21698 1.21074 1.20908 0.97906 0.89695 0.88280 1.21377 0.94262 0.99349 0.94215 1.21804 0.98730 0.96344 1.02042 1.21815 1.01374 1.00077 0.96242 1.23340 1.00586 0.85195 0.85337 1.67607 1.07430 1.29976 1.19960 0.91572 0.87602 0.91545 0.79566 0.77180 0.92813 0.92110 0.96146 0.89225 0.93531 0.96236 0.92313 0.94843 0.92978 0.90490 0.92868 0.92606 0.93523 0.80379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.35 101.05 1.05 1.31 16 2 O -0.29 -2.98 10.55 -17.57 -0.19 -3.16 16 3 C 0.51 5.94 8.48 -90.98 -0.77 5.17 16 4 N -0.57 -6.25 9.19 -14.39 -0.13 -6.38 16 5 C 0.25 2.66 10.87 -16.79 -0.18 2.48 16 6 C -0.28 -3.05 5.90 -104.70 -0.62 -3.67 16 7 C 0.57 7.68 7.74 -12.43 -0.10 7.58 16 8 O -0.53 -9.10 16.10 5.30 0.09 -9.02 16 9 N -0.71 -9.01 4.24 -54.78 -0.23 -9.24 16 10 C 0.16 2.62 1.57 -67.89 -0.11 2.51 16 11 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 12 C -0.15 -2.80 5.31 -26.61 -0.14 -2.94 16 13 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 14 N -0.59 -13.81 2.43 -172.32 -0.42 -14.22 16 15 C -0.25 -6.59 9.58 -15.06 -0.14 -6.74 16 16 H 0.07 1.65 7.88 -52.49 -0.41 1.24 16 17 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 18 N -0.90 -25.65 11.20 55.49 0.62 -25.03 16 19 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C 0.16 3.09 5.20 -3.71 -0.02 3.07 16 24 C -0.09 -1.36 0.56 -154.39 -0.09 -1.44 16 25 C -0.13 -1.89 7.83 37.16 0.29 -1.60 16 26 C -0.14 -1.71 8.31 37.16 0.31 -1.40 16 27 C 0.22 2.19 10.81 -16.79 -0.18 2.01 16 28 N -0.52 -6.11 10.45 -14.39 -0.15 -6.26 16 29 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 30 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.19 1.77 7.74 -52.49 -0.41 1.37 16 33 H 0.39 3.90 4.79 -40.82 -0.20 3.71 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.11 6.34 -51.93 -0.33 0.78 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 38 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 41 H 0.03 0.37 6.58 -51.93 -0.34 0.03 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.33 5.97 -51.93 -0.31 1.02 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.50 7.36 -51.92 -0.38 0.11 16 47 H 0.18 1.19 6.53 -52.49 -0.34 0.85 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -31.62 374.02 -7.39 -39.00 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.77 Total: 2.14 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -0.81 Total: 10.35 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: -0.31 Total: -61.14 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.10 Total: -12.18 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.62 -7.39 -39.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941142372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.911 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds