Wall clock time and date at job start Tue Mar 31 2020 19:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35292 * 116.99645 * 2 1 4 4 N 1.32469 * 119.02440 * 0.27278 * 3 2 1 5 5 C 1.32024 * 120.91345 * 180.24240 * 4 3 2 6 6 C 1.40056 * 118.98575 * 359.49360 * 5 4 3 7 7 C 1.47629 * 120.87630 * 180.27677 * 6 5 4 8 8 O 1.21572 * 120.00471 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99674 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00316 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.45906 * 325.02494 * 10 9 7 12 12 C 1.53034 * 109.45960 * 84.99602 * 10 9 7 13 13 C 1.53192 * 109.31585 * 181.38912 * 12 10 9 14 14 N 1.46926 * 108.77360 * 305.36781 * 13 12 10 15 15 C 1.36941 * 120.63251 * 233.62627 * 14 13 12 16 16 H 1.07996 * 120.00060 * 151.82921 * 15 14 13 17 17 C 1.38809 * 119.99929 * 331.83024 * 15 14 13 18 18 N 1.31617 * 120.00014 * 343.06921 * 17 15 14 19 19 Si 1.86799 * 120.00185 * 163.06968 * 17 15 14 20 20 H 1.48499 * 109.47147 * 59.99991 * 19 17 15 21 21 H 1.48498 * 109.47302 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47031 * 299.99885 * 19 17 15 23 23 C 1.46925 * 118.73976 * 53.60730 * 14 13 12 24 24 C 1.53039 * 109.46173 * 205.06873 * 10 9 7 25 25 C 1.53004 * 109.49628 * 298.56311 * 24 10 9 26 26 C 1.52997 * 109.50130 * 58.66376 * 24 10 9 27 27 C 1.40057 * 118.23927 * 0.24846 * 6 5 4 28 28 N 1.32016 * 118.98752 * 0.02562 * 27 6 5 29 29 H 1.09004 * 109.46941 * 59.99818 * 1 2 3 30 30 H 1.08994 * 109.46941 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47056 * 300.00060 * 1 2 3 32 32 H 1.08000 * 120.50354 * 179.76808 * 5 4 3 33 33 H 0.97008 * 120.00017 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.50279 * 301.34475 * 12 10 9 35 35 H 1.09002 * 109.49914 * 61.40671 * 12 10 9 36 36 H 1.09003 * 109.58857 * 65.15244 * 13 12 10 37 37 H 1.08997 * 109.59357 * 185.58363 * 13 12 10 38 38 H 0.96997 * 120.00325 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.58885 * 66.17797 * 23 14 13 40 40 H 1.09002 * 109.58547 * 186.46082 * 23 14 13 41 41 H 1.08997 * 109.46901 * 60.00436 * 25 24 10 42 42 H 1.09003 * 109.46865 * 180.02562 * 25 24 10 43 43 H 1.09004 * 109.46817 * 299.99799 * 25 24 10 44 44 H 1.09000 * 109.47099 * 59.99223 * 26 24 10 45 45 H 1.09000 * 109.47452 * 179.97438 * 26 24 10 46 46 H 1.09010 * 109.46659 * 299.99926 * 26 24 10 47 47 H 1.07992 * 120.50707 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0432 1.2055 0.0000 4 7 1.3029 2.3040 0.0055 5 6 1.8631 3.4995 0.0009 6 6 3.2604 3.5942 0.0009 7 6 3.9306 4.9097 0.0020 8 8 3.2684 5.9293 0.0025 9 7 5.2764 4.9802 0.0025 10 6 5.9416 6.2855 0.0030 11 1 5.3563 6.9915 -0.5862 12 6 6.0604 6.7966 1.4406 13 6 6.7250 8.1768 1.4344 14 7 8.0053 8.0820 0.7198 15 6 9.1658 8.5094 1.3078 16 1 10.1083 8.0603 1.0317 17 6 9.1308 9.5200 2.2587 18 7 8.0691 10.2912 2.3607 19 14 10.5905 9.7856 3.3937 20 1 11.7965 10.0960 2.5848 21 1 10.3045 10.9177 4.3113 22 1 10.8305 8.5540 4.1879 23 6 8.0169 7.5195 -0.6374 24 6 7.3379 6.1465 -0.6079 25 6 8.1718 5.1824 0.2382 26 6 7.2198 5.6045 -2.0338 27 6 4.0051 2.4080 0.0004 28 7 3.3672 1.2522 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.2530 4.3907 0.0017 33 1 5.8048 4.1666 0.0025 34 1 5.0671 6.8730 1.8829 35 1 6.6661 6.1033 2.0243 36 1 6.0765 8.8924 0.9287 37 1 6.9020 8.5019 2.4596 38 1 8.0444 10.9971 3.0254 39 1 7.4737 8.1813 -1.3120 40 1 9.0462 7.4131 -0.9801 41 1 7.6868 4.2065 0.2613 42 1 9.1663 5.0841 -0.1970 43 1 8.2566 5.5702 1.2534 44 1 6.6267 6.2926 -2.6361 45 1 8.2145 5.5061 -2.4687 46 1 6.7340 4.6289 -2.0125 47 1 5.0846 2.4384 0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941142372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:59 Heat of formation + Delta-G solvation = -16.406190 kcal Electronic energy + Delta-G solvation = -29435.291689 eV Core-core repulsion = 25425.845192 eV Total energy + Delta-G solvation = -4009.446498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.56683 -41.27259 -39.79341 -39.06061 -36.37379 -35.22993 -34.52472 -33.27434 -32.88157 -31.34545 -28.70594 -28.09036 -27.42553 -27.05692 -25.63802 -25.41585 -23.83225 -22.42682 -21.79728 -20.07275 -19.87140 -19.26564 -18.84525 -18.24043 -17.59961 -17.05873 -16.68592 -16.18010 -16.11188 -15.87228 -15.64014 -15.56080 -15.30012 -15.02980 -14.91237 -14.69930 -14.55896 -14.26556 -13.81122 -13.11636 -13.10459 -13.07447 -12.94024 -12.78061 -12.67267 -12.52640 -12.40630 -12.29463 -12.23100 -12.19136 -12.05058 -11.96159 -11.56727 -11.32751 -11.21374 -10.95453 -10.52382 -10.48198 -10.33282 -9.94485 -8.64486 -7.83602 -5.28800 -0.65484 -0.16875 1.40137 1.49141 1.51313 1.57655 1.73090 2.02197 2.53948 2.62166 2.78554 3.29657 3.32243 3.44319 3.59880 3.67267 3.73513 3.84646 4.01560 4.10101 4.35722 4.36581 4.43805 4.48688 4.58466 4.64977 4.67192 4.74046 4.84405 4.88081 4.89193 4.98130 5.06894 5.09199 5.17850 5.25157 5.33138 5.42421 5.43287 5.47687 5.54796 5.66865 5.69885 5.79024 5.88294 6.42118 6.48492 6.76334 7.15457 7.17565 7.88967 8.41515 9.22960 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023913 B = 0.002518 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.623969 B =11116.296583 C =11352.816281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.297 6.297 3 C 0.505 3.495 4 N -0.573 5.573 5 C 0.247 3.753 6 C -0.282 4.282 7 C 0.575 3.425 8 O -0.572 6.572 9 N -0.698 5.698 10 C 0.178 3.822 11 H 0.059 0.941 12 C -0.135 4.135 13 C 0.183 3.817 14 N -0.601 5.601 15 C -0.252 4.252 16 H 0.072 0.928 17 C -0.054 4.054 18 N -0.938 5.938 19 Si 0.964 3.036 20 H -0.275 1.275 21 H -0.300 1.300 22 H -0.277 1.277 23 C 0.154 3.846 24 C -0.078 4.078 25 C -0.129 4.129 26 C -0.132 4.132 27 C 0.237 3.763 28 N -0.541 5.541 29 H 0.067 0.933 30 H 0.135 0.865 31 H 0.066 0.934 32 H 0.193 0.807 33 H 0.411 0.589 34 H 0.046 0.954 35 H 0.069 0.931 36 H -0.013 1.013 37 H 0.055 0.945 38 H 0.248 0.752 39 H 0.006 0.994 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.624 -21.593 -7.046 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.198 6.198 3 C 0.204 3.796 4 N -0.302 5.302 5 C 0.081 3.919 6 C -0.290 4.290 7 C 0.362 3.638 8 O -0.452 6.452 9 N -0.350 5.350 10 C 0.073 3.927 11 H 0.078 0.922 12 C -0.175 4.175 13 C 0.056 3.944 14 N -0.324 5.324 15 C -0.382 4.382 16 H 0.090 0.910 17 C -0.249 4.249 18 N -0.584 5.584 19 Si 0.793 3.207 20 H -0.201 1.201 21 H -0.227 1.227 22 H -0.203 1.203 23 C 0.028 3.972 24 C -0.080 4.080 25 C -0.186 4.186 26 C -0.189 4.189 27 C 0.070 3.930 28 N -0.267 5.267 29 H 0.086 0.914 30 H 0.153 0.847 31 H 0.085 0.915 32 H 0.210 0.790 33 H 0.250 0.750 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.005 0.995 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.024 0.976 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -11.534 -22.014 -6.951 25.807 hybrid contribution 0.860 1.638 0.848 2.035 sum -10.675 -20.376 -6.103 23.799 Atomic orbital electron populations 1.23369 0.73289 1.05852 1.03303 1.86079 1.25715 1.22251 1.85735 1.21262 0.86633 0.85498 0.86187 1.68259 1.40723 0.98923 1.22310 1.23425 0.91728 0.94669 0.82127 1.21444 0.97024 0.95318 1.15261 1.17825 0.82483 0.87708 0.75819 1.90811 1.65443 1.37252 1.51683 1.45900 1.05430 1.09926 1.73760 1.20650 0.92754 0.83626 0.95671 0.92247 1.22385 0.99293 0.98817 0.96991 1.20461 0.85281 0.91695 0.96959 1.44229 1.03884 1.71915 1.12363 1.19455 0.87575 1.12443 1.18750 0.91047 1.25803 0.99794 0.95824 1.03485 1.70192 1.31555 1.20129 1.36572 0.85385 0.79589 0.76839 0.78895 1.20073 1.22672 1.20299 1.21102 0.98608 0.91720 0.85786 1.21195 0.93071 0.97068 0.96669 1.21761 0.99438 0.97613 0.99760 1.21775 1.02518 1.01063 0.93567 1.23821 1.01885 0.84016 0.83281 1.67704 1.07570 1.30553 1.20846 0.91384 0.84700 0.91532 0.78991 0.75038 0.93494 0.91213 0.99492 0.92706 0.94324 0.97626 0.91886 0.90858 0.92209 0.93582 0.93592 0.91231 0.90701 0.77031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.35 113.37 1.17 1.57 16 2 O -0.30 -5.64 10.55 -85.78 -0.90 -6.55 16 3 C 0.50 10.75 8.48 180.47 1.53 12.28 16 4 N -0.57 -11.69 9.19 -312.40 -2.87 -14.56 16 5 C 0.25 4.96 10.87 85.11 0.93 5.89 16 6 C -0.28 -5.60 5.90 -19.92 -0.12 -5.72 16 7 C 0.58 14.55 7.74 86.72 0.67 15.22 16 8 O -0.57 -19.47 16.10 -3.94 -0.06 -19.53 16 9 N -0.70 -15.79 4.24 -445.50 -1.89 -17.68 16 10 C 0.18 5.50 1.57 45.02 0.07 5.57 16 11 H 0.06 2.19 7.58 -2.39 -0.02 2.17 16 12 C -0.13 -5.07 5.31 30.67 0.16 -4.91 16 13 C 0.18 8.88 5.30 86.36 0.46 9.34 16 14 N -0.60 -28.87 2.43 -699.08 -1.70 -30.57 16 15 C -0.25 -13.30 9.58 84.03 0.81 -12.50 16 16 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 17 C -0.05 -2.98 4.92 84.86 0.42 -2.56 16 18 N -0.94 -55.81 11.20 21.65 0.24 -55.56 16 19 Si 0.96 44.34 29.59 68.60 2.03 46.37 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 C 0.15 5.94 5.20 86.36 0.45 6.38 16 24 C -0.08 -2.20 0.56 -52.10 -0.03 -2.23 16 25 C -0.13 -3.24 7.83 71.98 0.56 -2.68 16 26 C -0.13 -2.81 8.31 71.98 0.60 -2.21 16 27 C 0.24 3.85 10.81 85.11 0.92 4.77 16 28 N -0.54 -11.15 10.45 -312.41 -3.26 -14.42 16 29 H 0.07 0.71 8.09 -2.38 -0.02 0.69 16 30 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 32 H 0.19 3.53 7.74 -2.91 -0.02 3.51 16 33 H 0.41 6.29 4.79 -92.70 -0.44 5.84 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 2.51 6.34 -2.39 -0.02 2.50 16 36 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 37 H 0.05 3.03 6.06 -2.39 -0.01 3.02 16 38 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 39 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.06 2.35 7.93 -2.39 -0.02 2.33 16 41 H 0.07 1.26 6.58 -2.39 -0.02 1.24 16 42 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 1.48 5.97 -2.38 -0.01 1.46 16 44 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.07 1.21 7.36 -2.38 -0.02 1.19 16 47 H 0.21 1.75 6.53 -2.91 -0.02 1.73 16 Total: -1.00 -72.17 374.02 0.73 -71.44 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.55 Total: 12.85 kcal Atomic # 6 Polarization: 19.61 SS G_CDS: 8.60 Total: 28.21 kcal Atomic # 7 Polarization: -123.31 SS G_CDS: -9.48 Total: -132.80 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.97 Total: -26.08 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -72.17 0.73 -71.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941142372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.030 kcal (2) G-P(sol) polarization free energy of solvation -72.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds