Wall clock time and date at job start Tue Mar 31 2020 19:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35510 * 117.00036 * 2 1 4 4 C 1.39344 * 120.02853 * 179.97438 * 3 2 1 5 5 C 1.38424 * 118.03429 * 180.02562 * 4 3 2 6 6 C 1.39979 * 117.97155 * 0.02562 * 5 4 3 7 7 C 1.47935 * 120.11266 * 180.27779 * 6 5 4 8 8 O 1.21544 * 120.00074 * 359.71596 * 7 6 5 9 9 N 1.34779 * 119.99644 * 179.72291 * 7 6 5 10 10 C 1.46500 * 119.99794 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46013 * 325.02971 * 10 9 7 12 12 C 1.53038 * 109.46009 * 85.00288 * 10 9 7 13 13 C 1.53183 * 109.31424 * 181.38376 * 12 10 9 14 14 N 1.46919 * 108.77580 * 305.36202 * 13 12 10 15 15 C 1.36942 * 120.63302 * 233.63092 * 14 13 12 16 16 H 1.08000 * 120.00225 * 151.85320 * 15 14 13 17 17 C 1.38810 * 120.00042 * 331.84638 * 15 14 13 18 18 N 1.31624 * 119.99919 * 343.05693 * 17 15 14 19 19 Si 1.86798 * 120.00203 * 163.05352 * 17 15 14 20 20 H 1.48495 * 109.47207 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47205 * 120.00665 * 19 17 15 22 22 H 1.48504 * 109.47070 * 240.00352 * 19 17 15 23 23 C 1.46924 * 118.74068 * 53.61137 * 14 13 12 24 24 C 1.53045 * 109.45683 * 205.06496 * 10 9 7 25 25 C 1.53001 * 109.49956 * 298.56738 * 24 10 9 26 26 C 1.53004 * 109.49707 * 58.66963 * 24 10 9 27 27 N 1.32741 * 119.76419 * 359.97438 * 6 5 4 28 28 N 1.28357 * 122.09187 * 359.97438 * 27 6 5 29 29 H 1.08996 * 109.47311 * 300.00125 * 1 2 3 30 30 H 1.09001 * 109.46977 * 60.00557 * 1 2 3 31 31 H 1.09005 * 109.47207 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.98471 * 0.02562 * 4 3 2 33 33 H 1.08002 * 121.01146 * 180.02562 * 5 4 3 34 34 H 0.97003 * 119.99801 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.49178 * 301.33749 * 12 10 9 36 36 H 1.08999 * 109.49896 * 61.39671 * 12 10 9 37 37 H 1.09004 * 109.58795 * 65.14944 * 13 12 10 38 38 H 1.09002 * 109.59200 * 185.43157 * 13 12 10 39 39 H 0.97001 * 120.00246 * 179.97438 * 18 17 15 40 40 H 1.08994 * 109.58952 * 66.17452 * 23 14 13 41 41 H 1.09000 * 109.59023 * 186.46186 * 23 14 13 42 42 H 1.09001 * 109.46813 * 60.00392 * 25 24 10 43 43 H 1.09002 * 109.46784 * 179.97438 * 25 24 10 44 44 H 1.08996 * 109.46793 * 300.00129 * 25 24 10 45 45 H 1.09002 * 109.47084 * 59.99159 * 26 24 10 46 46 H 1.08998 * 109.46995 * 179.97438 * 26 24 10 47 47 H 1.09008 * 109.46737 * 299.99670 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4357 1.2810 0.0005 5 6 4.0208 2.5355 0.0011 6 6 3.1780 3.6531 0.0016 7 6 3.7528 5.0162 -0.0041 8 8 4.9588 5.1672 -0.0039 9 7 2.9391 6.0906 -0.0092 10 6 3.5083 7.4405 -0.0142 11 1 4.4248 7.4503 0.5756 12 6 3.8235 7.8556 -1.4531 13 6 4.4502 9.2533 -1.4515 14 7 3.5518 10.1736 -0.7412 15 6 3.1309 11.3341 -1.3338 16 1 2.1799 11.7663 -1.0598 17 6 3.9267 11.9551 -2.2867 18 7 5.2008 11.6402 -2.3866 19 14 3.1894 13.2376 -3.4273 20 1 1.7484 13.4097 -3.1130 21 1 3.8945 14.5310 -3.2394 22 1 3.3395 12.7921 -4.8359 23 6 3.1132 9.8249 0.6170 24 6 2.5013 8.4206 0.5922 25 6 1.2274 8.4335 -0.2551 26 6 2.1619 7.9862 2.0195 27 7 1.8612 3.4854 0.0010 28 7 1.3221 2.3205 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 4.0398 0.3858 0.0005 33 1 5.0949 2.6485 0.0011 34 1 1.9766 5.9700 -0.0096 35 1 4.5226 7.1438 -1.8921 36 1 2.9036 7.8695 -2.0376 37 1 5.4149 9.2207 -0.9449 38 1 4.5879 9.5933 -2.4779 39 1 5.7569 12.0738 -3.0527 40 1 3.9687 9.8388 1.2922 41 1 2.3681 10.5444 0.9565 42 1 0.7940 7.4335 -0.2747 43 1 0.5104 9.1313 0.1775 44 1 1.4700 8.7445 -1.2712 45 1 3.0698 7.9786 2.6226 46 1 1.4451 8.6847 2.4511 47 1 1.7293 6.9858 2.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941145119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:06 Heat of formation + Delta-G solvation = 9.407264 kcal Electronic energy + Delta-G solvation = -29453.228629 eV Core-core repulsion = 25444.901486 eV Total energy + Delta-G solvation = -4008.327142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.66916 -40.01602 -38.90140 -37.96883 -34.68720 -33.66183 -33.16711 -32.18844 -31.28702 -29.80049 -28.06151 -26.86313 -26.06205 -25.72621 -24.83012 -24.08738 -22.36130 -20.83544 -20.58141 -19.15849 -18.74155 -18.13487 -17.38324 -16.76873 -16.64508 -15.75206 -15.27650 -15.07526 -14.95137 -14.67628 -14.49253 -14.14488 -14.09809 -13.76626 -13.64602 -13.45036 -13.01912 -12.75195 -12.51832 -12.28619 -12.25798 -11.98556 -11.71084 -11.46001 -11.31860 -10.98000 -10.89013 -10.70358 -10.65854 -10.57576 -10.38978 -10.14961 -10.13025 -10.03648 -9.90994 -9.70288 -9.56169 -9.43062 -8.69829 -8.39581 -6.64849 -5.76661 -3.19245 0.22336 0.35365 2.38705 2.54594 3.08631 3.38606 3.43683 3.46756 3.48462 3.61102 3.90382 4.38609 4.47938 4.50837 4.66425 4.78626 4.84942 5.03932 5.10129 5.19303 5.28139 5.36631 5.37558 5.46161 5.60289 5.63244 5.88678 5.91034 6.00556 6.12989 6.19991 6.31410 6.33643 6.44207 6.49104 6.57075 6.58011 6.69361 6.82481 6.84224 6.93055 7.03167 7.39314 7.61254 7.70522 7.82410 8.11315 8.25856 8.46850 9.23055 9.86425 10.43110 11.31811 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021715 B = 0.002579 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.100814 B =10853.761897 C =11018.580650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.297 6.297 3 C 0.274 3.726 4 C -0.140 4.140 5 C -0.032 4.032 6 C -0.001 4.001 7 C 0.573 3.427 8 O -0.530 6.530 9 N -0.696 5.696 10 C 0.161 3.839 11 H 0.084 0.916 12 C -0.151 4.151 13 C 0.174 3.826 14 N -0.588 5.588 15 C -0.250 4.250 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.901 5.901 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.160 3.840 24 C -0.088 4.088 25 C -0.133 4.133 26 C -0.138 4.138 27 N -0.170 5.170 28 N -0.299 5.299 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.164 0.836 33 H 0.171 0.829 34 H 0.406 0.594 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.020 0.980 38 H 0.090 0.910 39 H 0.253 0.747 40 H 0.020 0.980 41 H 0.059 0.941 42 H 0.036 0.964 43 H 0.050 0.950 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.463 -22.327 6.270 24.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.201 6.201 3 C 0.090 3.910 4 C -0.170 4.170 5 C -0.060 4.060 6 C -0.150 4.150 7 C 0.355 3.645 8 O -0.405 6.405 9 N -0.347 5.347 10 C 0.058 3.942 11 H 0.102 0.898 12 C -0.191 4.191 13 C 0.048 3.952 14 N -0.310 5.310 15 C -0.379 4.379 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.730 3.270 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.216 1.216 23 C 0.032 3.968 24 C -0.091 4.091 25 C -0.190 4.190 26 C -0.196 4.196 27 N -0.019 5.019 28 N -0.157 5.157 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.181 0.819 33 H 0.189 0.811 34 H 0.243 0.757 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.038 0.962 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.887 -21.739 6.155 23.931 hybrid contribution 0.370 -0.139 -0.647 0.758 sum -7.516 -21.878 5.508 23.780 Atomic orbital electron populations 1.23076 0.76131 1.03804 1.03244 1.86213 1.23769 1.23232 1.86876 1.21666 0.91079 0.87186 0.91044 1.21543 0.92186 0.99946 1.03281 1.22348 1.03192 0.90032 0.90438 1.22896 0.91872 0.96674 1.03578 1.17407 0.86418 0.82856 0.77777 1.90824 1.13643 1.85634 1.50428 1.46238 1.10549 1.06033 1.71849 1.21136 0.96503 0.78291 0.98238 0.89787 1.22652 1.01242 1.00545 0.94632 1.20747 0.90598 0.84362 0.99513 1.44050 1.55593 1.20768 1.10622 1.19189 0.99829 1.00067 1.18846 0.91622 1.25048 0.94733 0.98185 1.01684 1.70044 1.03920 1.44871 1.35711 0.86260 0.78627 0.81155 0.80944 1.20278 1.21809 1.21639 1.20914 0.96421 0.91223 0.88200 1.21363 0.95686 0.97754 0.94289 1.21804 0.95856 0.99499 1.01840 1.21823 1.01152 1.00463 0.96154 1.72991 1.10207 1.13975 1.04695 1.73192 1.31266 0.94017 1.17236 0.91610 0.91574 0.87892 0.81881 0.81146 0.75732 0.92852 0.92014 0.96160 0.89216 0.93687 0.96237 0.92290 0.94457 0.93052 0.90596 0.92962 0.92626 0.93289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.39 101.05 1.05 1.24 16 2 O -0.30 -2.55 10.48 -18.22 -0.19 -2.74 16 3 C 0.27 2.75 7.57 -16.77 -0.13 2.62 16 4 C -0.14 -1.17 10.14 -39.10 -0.40 -1.57 16 5 C -0.03 -0.32 9.72 -38.86 -0.38 -0.69 16 6 C 0.00 -0.01 6.83 -82.85 -0.57 -0.58 16 7 C 0.57 8.71 7.77 -12.29 -0.10 8.62 16 8 O -0.53 -9.46 16.05 5.33 0.09 -9.37 16 9 N -0.70 -10.40 4.28 -54.68 -0.23 -10.63 16 10 C 0.16 2.79 1.57 -67.89 -0.11 2.68 16 11 H 0.08 1.61 7.57 -51.93 -0.39 1.22 16 12 C -0.15 -2.95 5.31 -26.62 -0.14 -3.09 16 13 C 0.17 4.14 5.30 -3.72 -0.02 4.12 16 14 N -0.59 -14.20 2.43 -172.33 -0.42 -14.62 16 15 C -0.25 -6.65 9.58 -15.06 -0.14 -6.79 16 16 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 17 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 18 N -0.90 -26.01 11.19 55.49 0.62 -25.39 16 19 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 C 0.16 3.23 5.20 -3.71 -0.02 3.21 16 24 C -0.09 -1.46 0.56 -154.38 -0.09 -1.54 16 25 C -0.13 -2.11 7.83 37.16 0.29 -1.82 16 26 C -0.14 -1.91 8.31 37.16 0.31 -1.60 16 27 N -0.17 -2.21 10.73 33.32 0.36 -1.85 16 28 N -0.30 -3.56 10.40 30.54 0.32 -3.24 16 29 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 30 H 0.07 0.42 8.11 -51.93 -0.42 -0.01 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.17 1.44 7.71 -52.49 -0.40 1.04 16 34 H 0.41 5.55 6.01 -40.82 -0.25 5.30 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.21 6.34 -51.93 -0.33 0.88 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 39 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 42 H 0.04 0.51 6.58 -51.93 -0.34 0.17 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.08 1.41 5.97 -51.93 -0.31 1.10 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.05 0.63 7.36 -51.92 -0.38 0.24 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -31.16 376.48 -6.24 -37.40 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.91 Total: 3.50 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -0.52 Total: 4.78 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.64 Total: -55.73 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.11 Total: -12.11 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.16 -6.24 -37.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941145119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.811 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds