Wall clock time and date at job start Tue Mar 31 2020 19:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35510 * 117.00036 * 2 1 4 4 C 1.39344 * 120.02853 * 179.97438 * 3 2 1 5 5 C 1.38424 * 118.03429 * 180.02562 * 4 3 2 6 6 C 1.39979 * 117.97155 * 0.02562 * 5 4 3 7 7 C 1.47935 * 120.11266 * 180.27779 * 6 5 4 8 8 O 1.21544 * 120.00074 * 359.71596 * 7 6 5 9 9 N 1.34779 * 119.99644 * 179.72291 * 7 6 5 10 10 C 1.46500 * 119.99794 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46013 * 325.02971 * 10 9 7 12 12 C 1.53038 * 109.46009 * 85.00288 * 10 9 7 13 13 C 1.53183 * 109.31424 * 181.38376 * 12 10 9 14 14 N 1.46919 * 108.77580 * 305.36202 * 13 12 10 15 15 C 1.36942 * 120.63302 * 233.63092 * 14 13 12 16 16 H 1.08000 * 120.00225 * 151.85320 * 15 14 13 17 17 C 1.38810 * 120.00042 * 331.84638 * 15 14 13 18 18 N 1.31624 * 119.99919 * 343.05693 * 17 15 14 19 19 Si 1.86798 * 120.00203 * 163.05352 * 17 15 14 20 20 H 1.48495 * 109.47207 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47205 * 120.00665 * 19 17 15 22 22 H 1.48504 * 109.47070 * 240.00352 * 19 17 15 23 23 C 1.46924 * 118.74068 * 53.61137 * 14 13 12 24 24 C 1.53045 * 109.45683 * 205.06496 * 10 9 7 25 25 C 1.53001 * 109.49956 * 298.56738 * 24 10 9 26 26 C 1.53004 * 109.49707 * 58.66963 * 24 10 9 27 27 N 1.32741 * 119.76419 * 359.97438 * 6 5 4 28 28 N 1.28357 * 122.09187 * 359.97438 * 27 6 5 29 29 H 1.08996 * 109.47311 * 300.00125 * 1 2 3 30 30 H 1.09001 * 109.46977 * 60.00557 * 1 2 3 31 31 H 1.09005 * 109.47207 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.98471 * 0.02562 * 4 3 2 33 33 H 1.08002 * 121.01146 * 180.02562 * 5 4 3 34 34 H 0.97003 * 119.99801 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.49178 * 301.33749 * 12 10 9 36 36 H 1.08999 * 109.49896 * 61.39671 * 12 10 9 37 37 H 1.09004 * 109.58795 * 65.14944 * 13 12 10 38 38 H 1.09002 * 109.59200 * 185.43157 * 13 12 10 39 39 H 0.97001 * 120.00246 * 179.97438 * 18 17 15 40 40 H 1.08994 * 109.58952 * 66.17452 * 23 14 13 41 41 H 1.09000 * 109.59023 * 186.46186 * 23 14 13 42 42 H 1.09001 * 109.46813 * 60.00392 * 25 24 10 43 43 H 1.09002 * 109.46784 * 179.97438 * 25 24 10 44 44 H 1.08996 * 109.46793 * 300.00129 * 25 24 10 45 45 H 1.09002 * 109.47084 * 59.99159 * 26 24 10 46 46 H 1.08998 * 109.46995 * 179.97438 * 26 24 10 47 47 H 1.09008 * 109.46737 * 299.99670 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4357 1.2810 0.0005 5 6 4.0208 2.5355 0.0011 6 6 3.1780 3.6531 0.0016 7 6 3.7528 5.0162 -0.0041 8 8 4.9588 5.1672 -0.0039 9 7 2.9391 6.0906 -0.0092 10 6 3.5083 7.4405 -0.0142 11 1 4.4248 7.4503 0.5756 12 6 3.8235 7.8556 -1.4531 13 6 4.4502 9.2533 -1.4515 14 7 3.5518 10.1736 -0.7412 15 6 3.1309 11.3341 -1.3338 16 1 2.1799 11.7663 -1.0598 17 6 3.9267 11.9551 -2.2867 18 7 5.2008 11.6402 -2.3866 19 14 3.1894 13.2376 -3.4273 20 1 1.7484 13.4097 -3.1130 21 1 3.8945 14.5310 -3.2394 22 1 3.3395 12.7921 -4.8359 23 6 3.1132 9.8249 0.6170 24 6 2.5013 8.4206 0.5922 25 6 1.2274 8.4335 -0.2551 26 6 2.1619 7.9862 2.0195 27 7 1.8612 3.4854 0.0010 28 7 1.3221 2.3205 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 4.0398 0.3858 0.0005 33 1 5.0949 2.6485 0.0011 34 1 1.9766 5.9700 -0.0096 35 1 4.5226 7.1438 -1.8921 36 1 2.9036 7.8695 -2.0376 37 1 5.4149 9.2207 -0.9449 38 1 4.5879 9.5933 -2.4779 39 1 5.7569 12.0738 -3.0527 40 1 3.9687 9.8388 1.2922 41 1 2.3681 10.5444 0.9565 42 1 0.7940 7.4335 -0.2747 43 1 0.5104 9.1313 0.1775 44 1 1.4700 8.7445 -1.2712 45 1 3.0698 7.9786 2.6226 46 1 1.4451 8.6847 2.4511 47 1 1.7293 6.9858 2.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941145119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:05 Heat of formation + Delta-G solvation = -12.580582 kcal Electronic energy + Delta-G solvation = -29454.182093 eV Core-core repulsion = 25444.901486 eV Total energy + Delta-G solvation = -4009.280607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.51526 -41.28719 -39.85463 -39.18804 -36.37759 -34.70968 -34.33975 -33.30677 -32.99216 -31.46018 -28.65114 -28.13915 -27.45299 -27.26705 -26.08501 -25.00725 -23.90308 -22.45635 -21.96715 -20.16579 -19.72293 -19.06726 -18.82021 -18.34350 -17.48067 -17.12330 -16.71209 -16.29700 -16.06862 -15.67890 -15.64684 -15.40909 -15.34412 -15.10590 -14.92641 -14.76853 -14.54428 -14.25812 -13.84587 -13.26791 -13.13586 -13.09893 -12.90494 -12.82792 -12.73785 -12.61831 -12.54224 -12.30496 -12.25579 -12.07415 -11.93205 -11.60820 -11.47430 -11.37532 -11.31356 -11.03542 -10.92833 -10.54840 -10.36591 -10.00089 -8.65733 -7.84457 -5.29563 -0.64297 -0.40084 1.47331 1.49715 1.52043 1.59744 1.70496 1.96526 2.47495 2.53171 2.74232 3.09390 3.31359 3.57549 3.67172 3.71531 3.75173 3.81993 3.97427 4.06328 4.25850 4.38768 4.39270 4.42766 4.45743 4.61829 4.69731 4.71401 4.74331 4.84310 4.86081 4.89908 4.94134 5.02086 5.05431 5.13445 5.22570 5.29699 5.39306 5.43631 5.50347 5.63894 5.67834 5.75251 5.83300 6.40496 6.41545 7.02785 7.16600 7.29312 7.87440 8.40464 9.22580 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021715 B = 0.002579 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.100814 B =10853.761897 C =11018.580650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.297 6.297 3 C 0.272 3.728 4 C -0.122 4.122 5 C -0.033 4.033 6 C -0.016 4.016 7 C 0.576 3.424 8 O -0.561 6.561 9 N -0.689 5.689 10 C 0.174 3.826 11 H 0.064 0.936 12 C -0.135 4.135 13 C 0.184 3.816 14 N -0.601 5.601 15 C -0.251 4.251 16 H 0.071 0.929 17 C -0.054 4.054 18 N -0.937 5.937 19 Si 0.964 3.036 20 H -0.264 1.264 21 H -0.295 1.295 22 H -0.294 1.294 23 C 0.156 3.844 24 C -0.078 4.078 25 C -0.127 4.127 26 C -0.131 4.131 27 N -0.184 5.184 28 N -0.315 5.315 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.133 0.867 32 H 0.201 0.799 33 H 0.184 0.816 34 H 0.415 0.585 35 H 0.048 0.952 36 H 0.065 0.935 37 H -0.009 1.009 38 H 0.056 0.944 39 H 0.248 0.752 40 H 0.010 0.990 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.046 0.954 45 H 0.049 0.951 46 H 0.071 0.929 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.544 -24.731 7.116 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.200 6.200 3 C 0.088 3.912 4 C -0.151 4.151 5 C -0.061 4.061 6 C -0.165 4.165 7 C 0.360 3.640 8 O -0.439 6.439 9 N -0.339 5.339 10 C 0.069 3.931 11 H 0.082 0.918 12 C -0.175 4.175 13 C 0.058 3.942 14 N -0.324 5.324 15 C -0.381 4.381 16 H 0.089 0.911 17 C -0.249 4.249 18 N -0.584 5.584 19 Si 0.793 3.207 20 H -0.188 1.188 21 H -0.222 1.222 22 H -0.221 1.221 23 C 0.030 3.970 24 C -0.080 4.080 25 C -0.184 4.184 26 C -0.189 4.189 27 N -0.032 5.032 28 N -0.174 5.174 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.151 0.849 32 H 0.218 0.782 33 H 0.201 0.799 34 H 0.253 0.747 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.009 0.991 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.028 0.972 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.023 -24.179 7.029 27.101 hybrid contribution 0.985 0.477 -0.865 1.395 sum -9.038 -23.701 6.164 26.104 Atomic orbital electron populations 1.23325 0.74791 1.05773 1.02948 1.86238 1.25094 1.22266 1.86373 1.21935 0.91901 0.87187 0.90210 1.21908 0.91760 1.00524 1.00880 1.22514 1.03614 0.89820 0.90114 1.22568 0.92489 0.95764 1.05704 1.17733 0.85957 0.83780 0.76570 1.90809 1.15021 1.86298 1.51725 1.45997 1.10942 1.05007 1.71984 1.20761 0.96319 0.79977 0.96013 0.91761 1.22398 1.00756 0.97676 0.96697 1.20447 0.89974 0.86665 0.97142 1.44230 1.55486 1.20391 1.12287 1.19524 0.99745 1.00310 1.18526 0.91092 1.25799 0.95048 1.00592 1.03439 1.70204 1.05235 1.46479 1.36484 0.85247 0.78433 0.78429 0.78590 1.18777 1.22232 1.22065 1.21081 0.96288 0.93755 0.85899 1.21202 0.95379 0.94951 0.96500 1.21732 0.95542 1.01262 0.99865 1.21761 1.01612 1.01725 0.93758 1.72922 1.10198 1.14804 1.05274 1.73114 1.31754 0.94303 1.18202 0.91800 0.91967 0.84864 0.78188 0.79901 0.74654 0.93319 0.91625 0.99089 0.92541 0.94281 0.97187 0.91732 0.91877 0.92051 0.93454 0.93178 0.91030 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.39 113.37 1.18 1.43 16 2 O -0.30 -4.23 10.48 -88.13 -0.92 -5.16 16 3 C 0.27 4.76 7.57 84.83 0.64 5.40 16 4 C -0.12 -1.65 10.14 22.58 0.23 -1.42 16 5 C -0.03 -0.59 9.72 22.74 0.22 -0.36 16 6 C -0.02 -0.39 6.83 42.00 0.29 -0.10 16 7 C 0.58 17.16 7.77 86.81 0.67 17.83 16 8 O -0.56 -20.10 16.05 -3.85 -0.06 -20.17 16 9 N -0.69 -19.94 4.28 -445.19 -1.90 -21.84 16 10 C 0.17 6.00 1.57 45.02 0.07 6.07 16 11 H 0.06 2.52 7.57 -2.39 -0.02 2.50 16 12 C -0.14 -5.46 5.31 30.67 0.16 -5.29 16 13 C 0.18 9.22 5.30 86.36 0.46 9.68 16 14 N -0.60 -29.80 2.43 -699.12 -1.70 -31.50 16 15 C -0.25 -13.55 9.58 84.03 0.81 -12.75 16 16 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 17 C -0.05 -3.01 4.92 84.86 0.42 -2.59 16 18 N -0.94 -56.33 11.19 21.65 0.24 -56.09 16 19 Si 0.96 45.08 29.59 68.60 2.03 47.11 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 23 C 0.16 6.31 5.20 86.37 0.45 6.76 16 24 C -0.08 -2.49 0.56 -52.10 -0.03 -2.52 16 25 C -0.13 -3.80 7.83 71.98 0.56 -3.24 16 26 C -0.13 -3.31 8.31 71.98 0.60 -2.72 16 27 N -0.18 -4.47 10.73 -48.51 -0.52 -4.99 16 28 N -0.31 -6.92 10.40 -170.02 -1.77 -8.69 16 29 H 0.06 0.65 8.11 -2.39 -0.02 0.63 16 30 H 0.06 0.66 8.11 -2.39 -0.02 0.64 16 31 H 0.13 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.20 1.16 8.06 -2.91 -0.02 1.14 16 33 H 0.18 2.75 7.71 -2.91 -0.02 2.72 16 34 H 0.41 10.59 6.01 -92.71 -0.56 10.03 16 35 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 2.60 6.34 -2.39 -0.02 2.58 16 37 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 38 H 0.06 3.19 6.06 -2.39 -0.01 3.18 16 39 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 40 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 42 H 0.06 1.56 6.58 -2.39 -0.02 1.54 16 43 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.05 1.71 5.97 -2.39 -0.01 1.69 16 45 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 47 H 0.06 1.47 7.36 -2.38 -0.02 1.46 16 Total: -1.00 -69.98 376.48 2.56 -67.42 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.44 Total: 17.73 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 6.73 Total: 16.18 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -5.65 Total: -123.11 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.99 Total: -25.32 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -69.98 2.56 -67.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941145119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.839 kcal (2) G-P(sol) polarization free energy of solvation -69.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds