Wall clock time and date at job start Tue Mar 31 2020 19:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.52292 * 2 1 4 4 C 1.53187 * 109.48468 * 239.90689 * 2 1 3 5 5 N 1.46933 * 108.76287 * 185.39945 * 4 2 1 6 6 C 1.36936 * 120.62806 * 233.59722 * 5 4 2 7 7 H 1.07999 * 119.99599 * 151.85213 * 6 5 4 8 8 C 1.38807 * 120.00293 * 331.84206 * 6 5 4 9 9 N 1.31614 * 120.00237 * 343.07748 * 8 6 5 10 10 Si 1.86801 * 119.99827 * 163.06996 * 8 6 5 11 11 H 1.48503 * 109.47108 * 90.00373 * 10 8 6 12 12 H 1.48501 * 109.47321 * 210.00080 * 10 8 6 13 13 H 1.48499 * 109.47299 * 330.00515 * 10 8 6 14 14 C 1.46927 * 118.73578 * 53.61973 * 5 4 2 15 15 C 1.53184 * 108.77597 * 306.39003 * 14 5 4 16 16 C 1.53037 * 109.49456 * 120.08093 * 2 1 3 17 17 H 1.08998 * 109.46856 * 61.30921 * 16 2 1 18 18 N 1.46504 * 109.46107 * 301.33208 * 16 2 1 19 19 C 1.34774 * 120.00288 * 154.97102 * 18 16 2 20 20 O 1.21615 * 119.99980 * 0.02562 * 19 18 16 21 21 C 1.47389 * 120.00443 * 180.02562 * 19 18 16 22 22 C 1.38206 * 126.46284 * 0.02562 * 21 19 18 23 23 N 1.34258 * 108.39997 * 179.97438 * 22 21 19 24 24 H 0.96998 * 125.39277 * 180.02562 * 23 22 21 25 25 C 1.37777 * 109.21327 * 359.97438 * 23 22 21 26 26 C 1.46816 * 125.84548 * 179.97438 * 25 23 22 27 27 N 1.34775 * 120.00157 * 0.02562 * 26 25 23 28 28 O 1.21682 * 119.99812 * 180.02562 * 26 25 23 29 29 C 1.36350 * 108.30564 * 0.02562 * 25 23 22 30 30 H 1.08999 * 109.46785 * 299.92251 * 1 2 3 31 31 H 1.09001 * 109.46649 * 59.92057 * 1 2 3 32 32 H 1.08996 * 109.47017 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46690 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46864 * 300.07634 * 3 2 1 35 35 H 1.08995 * 109.47390 * 60.08291 * 3 2 1 36 36 H 1.09000 * 109.58359 * 65.62698 * 4 2 1 37 37 H 1.09000 * 109.72223 * 305.25979 * 4 2 1 38 38 H 0.97004 * 119.99928 * 180.02562 * 9 8 6 39 39 H 1.08996 * 109.58564 * 186.60059 * 14 5 4 40 40 H 1.09001 * 109.69891 * 66.24843 * 14 5 4 41 41 H 1.09002 * 109.50061 * 294.68414 * 15 14 5 42 42 H 1.08997 * 109.52354 * 174.60092 * 15 14 5 43 43 H 0.97002 * 119.99930 * 334.98407 * 18 16 2 44 44 H 1.08008 * 125.79590 * 0.03040 * 22 21 19 45 45 H 0.96997 * 119.99893 * 359.97438 * 27 26 25 46 46 H 0.97000 * 119.99661 * 179.97438 * 27 26 25 47 47 H 1.07994 * 126.49344 * 180.26129 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0410 -0.7241 -1.2495 5 7 3.5044 -0.8291 -1.1696 6 6 4.2931 -0.3793 -2.1947 7 1 5.2957 -0.0324 -1.9923 8 6 3.8042 -0.3692 -3.4937 9 7 2.7410 -1.0810 -3.8023 10 14 4.6550 0.6549 -4.8040 11 1 5.7016 -0.1624 -5.4688 12 1 3.6579 1.0970 -5.8117 13 1 5.2820 1.8441 -4.1732 14 6 4.1053 -1.4264 0.0308 15 6 3.5709 -0.6947 1.2659 16 6 2.0408 -0.7231 1.2483 17 1 1.6969 -1.7573 1.2353 18 7 1.5266 -0.0529 2.4453 19 6 1.3979 -0.7382 3.5986 20 8 1.7091 -1.9129 3.6459 21 6 0.8800 -0.0641 4.8027 22 6 0.4880 1.2576 4.8995 23 7 0.0777 1.4869 6.1572 24 1 -0.2503 2.3348 6.4953 25 6 0.1953 0.3268 6.8911 26 6 -0.1514 0.1675 8.3088 27 7 -0.6329 1.2151 9.0067 28 8 -0.0039 -0.9105 8.8537 29 6 0.6898 -0.6476 6.0755 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1314 1.4410 -0.0005 34 1 1.6774 1.9566 -0.8893 35 1 1.6798 1.9558 0.8907 36 1 1.7634 -0.1583 -2.1388 37 1 1.6053 -1.7219 -1.3004 38 1 2.3996 -1.0742 -4.7102 39 1 5.1895 -1.3242 -0.0139 40 1 3.8399 -2.4821 0.0881 41 1 3.9157 0.3392 1.2539 42 1 3.9335 -1.1887 2.1673 43 1 1.2785 0.8841 2.4077 44 1 0.5075 1.9826 4.0992 45 1 -0.7501 2.0744 8.5724 46 1 -0.8623 1.1096 9.9433 47 1 0.8929 -1.6723 6.3492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941224467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:32 Heat of formation + Delta-G solvation = -41.898325 kcal Electronic energy + Delta-G solvation = -29299.194689 eV Core-core repulsion = 25288.642770 eV Total energy + Delta-G solvation = -4010.551920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.60566 -41.09347 -39.97364 -39.16294 -36.20741 -34.90027 -34.21882 -33.80641 -32.39307 -31.31796 -30.23350 -28.06081 -27.55730 -26.87948 -24.75771 -24.12663 -23.10389 -22.24550 -21.29667 -20.76346 -20.15085 -19.42731 -18.68363 -17.90814 -17.42220 -16.95336 -16.79279 -16.53648 -16.37314 -15.79407 -15.65878 -15.35147 -15.17684 -14.95321 -14.90134 -14.64503 -14.59905 -14.37555 -14.13799 -13.78090 -13.37036 -13.20985 -12.99369 -12.83036 -12.64979 -12.56008 -12.39141 -12.27798 -11.89026 -11.78032 -11.57722 -11.52581 -11.25863 -11.15166 -10.87535 -10.84266 -10.49983 -10.22649 -9.86744 -9.39870 -8.63636 -7.82893 -5.28016 0.36445 0.80256 1.49649 1.51077 1.60662 1.95254 2.17930 2.23439 2.54800 2.57018 2.60543 3.32414 3.68371 3.79008 3.87272 3.94220 4.04664 4.09685 4.19199 4.25917 4.41026 4.51623 4.62831 4.70918 4.78299 4.88173 4.91272 4.93990 5.04148 5.05850 5.09555 5.17806 5.32091 5.34684 5.39033 5.41862 5.49988 5.51980 5.65382 5.67164 5.76481 5.79036 5.82343 6.27301 6.43395 6.46279 6.77747 7.18482 7.19244 7.44429 7.88913 8.42751 9.23825 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.030829 B = 0.002384 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.032153 B =11740.468833 C =11984.887170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C -0.120 4.120 4 C 0.193 3.807 5 N -0.602 5.602 6 C -0.255 4.255 7 H 0.066 0.934 8 C -0.049 4.049 9 N -0.936 5.936 10 Si 0.964 3.036 11 H -0.290 1.290 12 H -0.293 1.293 13 H -0.267 1.267 14 C 0.143 3.857 15 C -0.127 4.127 16 C 0.177 3.823 17 H 0.046 0.954 18 N -0.699 5.699 19 C 0.582 3.418 20 O -0.599 6.599 21 C -0.261 4.261 22 C 0.121 3.879 23 N -0.495 5.495 24 H 0.445 0.555 25 C -0.069 4.069 26 C 0.594 3.406 27 N -0.827 5.827 28 O -0.583 6.583 29 C -0.074 4.074 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.035 0.965 33 H 0.050 0.950 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.064 0.936 37 H -0.019 1.019 38 H 0.249 0.751 39 H 0.057 0.943 40 H -0.001 1.001 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.412 0.588 44 H 0.233 0.767 45 H 0.416 0.584 46 H 0.417 0.583 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.199 16.989 21.977 29.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.087 4.087 3 C -0.177 4.177 4 C 0.067 3.933 5 N -0.325 5.325 6 C -0.385 4.385 7 H 0.084 0.916 8 C -0.244 4.244 9 N -0.582 5.582 10 Si 0.793 3.207 11 H -0.218 1.218 12 H -0.219 1.219 13 H -0.192 1.192 14 C 0.016 3.984 15 C -0.167 4.167 16 C 0.072 3.928 17 H 0.064 0.936 18 N -0.350 5.350 19 C 0.372 3.628 20 O -0.481 6.481 21 C -0.270 4.270 22 C -0.024 4.024 23 N -0.092 5.092 24 H 0.289 0.711 25 C -0.180 4.180 26 C 0.380 3.620 27 N -0.392 5.392 28 O -0.463 6.463 29 C -0.100 4.100 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.083 0.917 37 H -0.001 1.001 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.017 0.983 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.250 0.750 44 H 0.249 0.751 45 H 0.247 0.753 46 H 0.250 0.750 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.970 15.566 22.198 28.886 hybrid contribution 0.208 0.346 -0.917 1.002 sum -9.761 15.912 21.281 28.308 Atomic orbital electron populations 1.21732 0.93309 1.01125 1.02511 1.21314 0.96020 0.97187 0.94190 1.21674 1.01292 0.93375 1.01372 1.20638 0.82472 0.95026 0.95183 1.44276 1.02171 1.69543 1.16493 1.19449 0.98235 1.34366 0.86443 0.91583 1.25760 0.99439 1.00305 0.98907 1.70194 1.27304 1.41944 1.18759 0.85327 0.77371 0.79071 0.78958 1.21764 1.21905 1.19164 1.20960 0.96826 0.93653 0.86930 1.22236 0.95603 1.01643 0.97232 1.20544 0.93014 0.95513 0.83733 0.93577 1.45755 1.65797 1.14733 1.08751 1.17866 0.76496 0.85460 0.83012 1.90768 1.53126 1.18608 1.85556 1.19527 1.17223 0.96175 0.94081 1.23040 0.95383 0.95883 0.88078 1.41540 1.47915 1.11210 1.08569 0.71140 1.19672 1.16970 0.88490 0.92904 1.17121 0.76247 0.84172 0.84474 1.43439 1.67104 1.12730 1.15914 1.90903 1.56201 1.28474 1.70710 1.21050 0.98101 0.98844 0.92053 0.89992 0.92475 0.94588 0.93141 0.93642 0.90265 0.91735 1.00077 0.94182 0.92479 0.98308 0.90319 0.92838 0.74957 0.75081 0.75294 0.75000 0.85746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 8.31 71.98 0.60 -3.05 16 2 C -0.08 -2.86 0.56 -52.10 -0.03 -2.89 16 3 C -0.12 -3.45 7.83 71.98 0.56 -2.89 16 4 C 0.19 9.09 3.98 86.36 0.34 9.44 16 5 N -0.60 -29.95 2.43 -699.11 -1.70 -31.65 16 6 C -0.25 -13.73 9.58 84.03 0.81 -12.93 16 7 H 0.07 3.48 7.88 -2.91 -0.02 3.45 16 8 C -0.05 -2.69 4.92 84.86 0.42 -2.27 16 9 N -0.94 -54.94 11.20 21.65 0.24 -54.69 16 10 Si 0.96 44.04 29.59 68.60 2.03 46.07 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 14 C 0.14 6.29 6.52 86.36 0.56 6.85 16 15 C -0.13 -4.57 5.31 30.67 0.16 -4.41 16 16 C 0.18 5.98 1.57 45.02 0.07 6.06 16 17 H 0.05 1.92 7.58 -2.39 -0.02 1.90 16 18 N -0.70 -17.33 4.28 -445.70 -1.91 -19.23 16 19 C 0.58 17.20 7.78 86.65 0.67 17.87 16 20 O -0.60 -24.59 16.58 -4.08 -0.07 -24.66 16 21 C -0.26 -5.56 6.13 -20.12 -0.12 -5.68 16 22 C 0.12 1.00 11.43 84.31 0.96 1.97 16 23 N -0.50 -2.60 5.91 -183.35 -1.08 -3.69 16 24 H 0.45 -2.15 8.14 -92.71 -0.75 -2.91 16 25 C -0.07 -1.11 6.99 40.01 0.28 -0.83 16 26 C 0.59 10.11 8.06 86.49 0.70 10.81 16 27 N -0.83 -4.11 8.87 -176.29 -1.56 -5.68 16 28 O -0.58 -16.50 17.69 -4.29 -0.08 -16.58 16 29 C -0.07 -1.82 10.37 22.58 0.23 -1.58 16 30 H 0.08 1.68 7.36 -2.39 -0.02 1.66 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.69 5.97 -2.39 -0.01 1.67 16 34 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.46 6.58 -2.39 -0.02 1.44 16 36 H 0.06 3.39 6.06 -2.39 -0.01 3.38 16 37 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 38 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 39 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 40 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.08 2.60 6.33 -2.39 -0.02 2.59 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.41 6.52 5.57 -92.71 -0.52 6.01 16 44 H 0.23 -0.39 7.44 -2.91 -0.02 -0.41 16 45 H 0.42 -1.44 7.91 -92.71 -0.73 -2.17 16 46 H 0.42 1.38 8.93 -92.71 -0.83 0.56 16 47 H 0.12 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -88.35 376.09 0.32 -88.04 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -1.78 Total: 5.60 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 6.22 Total: 16.46 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -6.01 Total: -114.94 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -0.14 Total: -41.23 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -88.35 0.32 -88.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941224467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.140 kcal (2) G-P(sol) polarization free energy of solvation -88.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds