Wall clock time and date at job start Tue Mar 31 2020 18:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35370 * 126.38668 * 2 1 4 4 C 1.41501 * 105.49975 * 180.14309 * 3 2 1 5 5 C 1.47711 * 126.51447 * 179.84764 * 4 3 2 6 6 O 1.21577 * 119.99832 * 5.17130 * 5 4 3 7 7 N 1.34773 * 120.00041 * 185.17877 * 5 4 3 8 8 C 1.47160 * 120.98449 * 356.14235 * 7 5 4 9 9 C 1.53302 * 108.37318 * 129.42844 * 8 7 5 10 10 O 1.42972 * 109.22644 * 52.35032 * 9 8 7 11 11 C 1.42902 * 114.20910 * 297.50327 * 10 9 8 12 12 C 1.52989 * 109.55979 * 302.53154 * 11 10 9 13 13 C 1.53198 * 109.34420 * 300.95779 * 12 11 10 14 14 N 1.46934 * 108.77472 * 305.42836 * 13 12 11 15 15 C 1.36936 * 120.64428 * 233.65467 * 14 13 12 16 16 H 1.08001 * 119.99771 * 21.24885 * 15 14 13 17 17 C 1.38817 * 120.00215 * 201.25135 * 15 14 13 18 18 N 1.31618 * 119.99752 * 35.53709 * 17 15 14 19 19 Si 1.86800 * 119.99914 * 215.53710 * 17 15 14 20 20 H 1.48506 * 109.46545 * 179.97438 * 19 17 15 21 21 H 1.48491 * 109.47274 * 299.99719 * 19 17 15 22 22 H 1.48500 * 109.47084 * 60.00099 * 19 17 15 23 23 C 1.46934 * 118.71306 * 53.92983 * 14 13 12 24 24 C 1.52992 * 109.54984 * 182.22690 * 11 10 9 25 25 C 1.47153 * 120.98756 * 176.16006 * 7 5 4 26 26 N 1.31811 * 106.96493 * 359.58240 * 4 3 2 27 27 N 1.28469 * 110.07472 * 0.26243 * 26 4 3 28 28 H 0.96997 * 124.88159 * 180.02562 * 27 26 4 29 29 H 1.09007 * 109.47307 * 270.29563 * 1 2 3 30 30 H 1.08998 * 109.47136 * 30.29738 * 1 2 3 31 31 H 1.08995 * 109.47431 * 150.29920 * 1 2 3 32 32 H 1.07997 * 127.24507 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.67934 * 249.14358 * 8 7 5 34 34 H 1.08992 * 109.68234 * 9.71005 * 8 7 5 35 35 H 1.08992 * 109.51313 * 172.27517 * 9 8 7 36 36 H 1.09001 * 109.51331 * 292.37702 * 9 8 7 37 37 H 1.08998 * 109.48843 * 180.99335 * 12 11 10 38 38 H 1.09000 * 109.51263 * 60.92647 * 12 11 10 39 39 H 1.09003 * 109.58205 * 185.64555 * 13 12 11 40 40 H 1.08992 * 109.70951 * 65.28511 * 13 12 11 41 41 H 0.96995 * 120.00097 * 5.74710 * 18 17 15 42 42 H 1.08991 * 109.58661 * 65.85181 * 23 14 13 43 43 H 1.09005 * 109.58280 * 186.28201 * 23 14 13 44 44 H 1.09002 * 109.49058 * 178.99974 * 24 11 10 45 45 H 1.09002 * 109.49252 * 299.05549 * 24 11 10 46 46 H 1.09003 * 109.67129 * 110.72526 * 25 7 5 47 47 H 1.09001 * 109.70763 * 350.20284 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6320 0.5853 -0.0034 5 6 4.8765 1.3811 -0.0079 6 8 4.8239 2.5921 0.0860 7 7 6.0701 0.7647 -0.1162 8 6 6.1646 -0.7035 -0.1465 9 6 7.0219 -1.1078 -1.3514 10 8 8.2596 -0.3934 -1.3095 11 6 8.1208 1.0256 -1.4068 12 6 7.3854 1.3808 -2.7005 13 6 8.1749 0.8414 -3.8974 14 7 9.5509 1.3515 -3.8250 15 6 10.1079 2.0106 -4.8882 16 1 9.4731 2.4618 -5.6365 17 6 11.4884 2.0990 -5.0043 18 7 12.2467 1.0946 -4.6189 19 14 12.2696 3.6432 -5.7076 20 1 13.7463 3.4871 -5.7242 21 1 11.7786 3.8598 -7.0921 22 1 11.9051 4.8102 -4.8647 23 6 10.3199 1.1354 -2.5917 24 6 9.5052 1.6766 -1.4070 25 6 7.3176 1.5400 -0.2072 26 7 3.5419 -0.7297 0.0040 27 7 2.3080 -1.0871 0.0061 28 1 1.9965 -2.0057 0.0116 29 1 -0.3634 0.0053 1.0277 30 1 -0.3633 0.8873 -0.5184 31 1 -0.3634 -0.8926 -0.5091 32 1 2.0057 2.1260 -0.0004 33 1 6.6307 -1.0604 0.7719 34 1 5.1679 -1.1336 -0.2442 35 1 7.2186 -2.1792 -1.3151 36 1 6.4921 -0.8658 -2.2727 37 1 7.2957 2.4640 -2.7821 38 1 6.3915 0.9333 -2.6889 39 1 7.7089 1.1774 -4.8238 40 1 8.1872 -0.2481 -3.8688 41 1 11.8401 0.2620 -4.3322 42 1 10.5020 0.0693 -2.4568 43 1 11.2702 1.6654 -2.6561 44 1 9.3988 2.7575 -1.4992 45 1 10.0187 1.4397 -0.4752 46 1 7.8980 1.4097 0.7062 47 1 7.0849 2.5957 -0.3467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949041253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:33 Heat of formation + Delta-G solvation = 39.305137 kcal Electronic energy + Delta-G solvation = -30298.847552 eV Core-core repulsion = 26291.816878 eV Total energy + Delta-G solvation = -4007.030673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.07306 -40.46684 -38.60961 -36.31776 -34.64411 -33.31085 -32.95974 -32.17259 -31.12718 -29.78369 -28.69614 -27.69989 -26.92541 -24.49345 -23.65993 -22.99675 -22.25306 -21.60957 -20.71837 -19.07396 -18.92583 -18.22751 -17.39248 -16.85310 -16.29375 -15.99798 -15.44026 -15.31084 -14.76865 -14.73017 -14.22250 -14.03621 -13.91390 -13.68299 -13.54916 -13.50581 -13.40349 -13.32737 -13.09506 -12.82463 -12.27832 -12.03969 -11.84231 -11.66340 -11.45428 -10.96717 -10.71141 -10.64368 -10.40951 -10.34026 -10.27114 -10.14635 -9.92962 -9.73120 -9.69473 -9.42247 -9.33386 -9.31278 -8.37588 -8.17583 -6.83986 -6.07069 -3.02795 1.26303 1.76762 2.39235 2.90052 3.26946 3.56013 3.61147 3.78484 4.00747 4.07766 4.25537 4.49494 4.68461 4.82621 4.92633 4.97107 5.09904 5.17158 5.22848 5.25857 5.30453 5.34306 5.36335 5.45791 5.54231 5.65702 5.69948 5.76944 5.85701 5.91992 6.02595 6.09372 6.24411 6.30400 6.36062 6.45018 6.51668 6.56226 6.69976 6.72147 6.92645 7.14053 7.28072 7.34089 7.52937 7.59063 8.08074 8.08890 8.63478 9.19005 9.94752 10.40912 11.23998 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024162 B = 0.002847 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.544862 B = 9833.213068 C =10039.189724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.017 3.983 3 C -0.178 4.178 4 C 0.003 3.997 5 C 0.600 3.400 6 O -0.532 6.532 7 N -0.595 5.595 8 C 0.044 3.956 9 C 0.046 3.954 10 O -0.361 6.361 11 C 0.119 3.881 12 C -0.152 4.152 13 C 0.156 3.844 14 N -0.596 5.596 15 C -0.357 4.357 16 H 0.057 0.943 17 C -0.021 4.021 18 N -0.902 5.902 19 Si 1.050 2.950 20 H -0.287 1.287 21 H -0.294 1.294 22 H -0.294 1.294 23 C 0.158 3.842 24 C -0.120 4.120 25 C 0.090 3.910 26 N -0.262 5.262 27 N -0.385 5.385 28 H 0.444 0.556 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.164 0.836 33 H 0.070 0.930 34 H 0.140 0.860 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.018 0.982 41 H 0.269 0.731 42 H 0.025 0.975 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.226 -6.688 12.477 27.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.158 4.158 5 C 0.386 3.614 6 O -0.407 6.407 7 N -0.328 5.328 8 C -0.079 4.079 9 C -0.032 4.032 10 O -0.279 6.279 11 C 0.079 3.921 12 C -0.192 4.192 13 C 0.030 3.970 14 N -0.320 5.320 15 C -0.486 4.486 16 H 0.075 0.925 17 C -0.223 4.223 18 N -0.541 5.541 19 Si 0.880 3.120 20 H -0.212 1.212 21 H -0.221 1.221 22 H -0.221 1.221 23 C 0.031 3.969 24 C -0.160 4.160 25 C -0.033 4.033 26 N -0.097 5.097 27 N -0.098 5.098 28 H 0.288 0.712 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.181 0.819 33 H 0.089 0.911 34 H 0.156 0.844 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.036 0.964 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.943 -6.269 12.189 25.030 hybrid contribution -2.452 -0.585 0.313 2.540 sum -23.395 -6.854 12.502 27.398 Atomic orbital electron populations 1.20376 0.86401 1.04151 1.03480 1.21476 0.95435 0.87092 1.06858 1.21532 0.90291 0.99908 1.08798 1.21966 0.95233 0.89557 1.09027 1.16987 0.81378 0.86264 0.76744 1.90795 1.86246 1.13052 1.50632 1.47926 1.05771 1.07642 1.71421 1.23358 1.05342 0.79648 0.99596 1.22894 0.86496 0.97009 0.96785 1.88037 1.28154 1.17784 1.93939 1.21732 0.96530 0.81161 0.92721 1.22505 0.98067 1.01945 0.96643 1.20718 0.86503 0.95338 0.94472 1.44162 1.10130 1.65932 1.11795 1.19913 0.92342 1.31148 1.05151 0.92503 1.25622 0.93242 1.02718 1.00756 1.70780 1.38170 1.02335 1.42839 0.83750 0.76089 0.76493 0.75695 1.21234 1.22109 1.22137 1.20919 0.94788 0.97659 0.83485 1.22131 0.93256 0.99826 1.00786 1.22513 0.83867 0.97591 0.99307 1.73161 1.00867 1.14844 1.20821 1.43510 1.03159 1.09618 1.53511 0.71201 0.90171 0.89346 0.90993 0.81889 0.91143 0.84364 0.88359 0.92574 0.91221 0.92970 0.93076 0.96428 0.92073 0.95698 0.90155 0.90683 0.92114 0.90825 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.28 10.44 36.00 0.38 0.10 16 2 C 0.02 0.13 7.23 -82.21 -0.59 -0.47 16 3 C -0.18 -1.86 10.73 -39.36 -0.42 -2.28 16 4 C 0.00 0.03 6.91 -82.76 -0.57 -0.54 16 5 C 0.60 9.38 7.71 -12.39 -0.10 9.28 16 6 O -0.53 -9.75 16.42 5.30 0.09 -9.66 16 7 N -0.59 -8.88 2.52 -173.45 -0.44 -9.32 16 8 C 0.04 0.56 6.50 -3.53 -0.02 0.54 16 9 C 0.05 0.65 6.60 37.31 0.25 0.90 16 10 O -0.36 -6.45 9.00 -35.23 -0.32 -6.77 16 11 C 0.12 2.13 0.68 -90.50 -0.06 2.07 16 12 C -0.15 -2.91 4.33 -26.63 -0.12 -3.02 16 13 C 0.16 3.49 6.28 -3.70 -0.02 3.47 16 14 N -0.60 -15.43 2.91 -172.04 -0.50 -15.93 16 15 C -0.36 -10.24 9.44 -15.06 -0.14 -10.38 16 16 H 0.06 1.65 7.99 -52.49 -0.42 1.23 16 17 C -0.02 -0.59 4.43 -17.43 -0.08 -0.67 16 18 N -0.90 -27.40 12.35 55.49 0.69 -26.72 16 19 Si 1.05 25.67 30.04 -169.99 -5.11 20.56 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 C 0.16 3.82 4.71 -3.48 -0.02 3.80 16 24 C -0.12 -2.37 5.12 -26.41 -0.14 -2.50 16 25 C 0.09 1.43 5.28 -3.55 -0.02 1.41 16 26 N -0.26 -2.74 8.59 33.42 0.29 -2.45 16 27 N -0.38 -2.68 6.83 33.50 0.23 -2.45 16 28 H 0.44 1.37 8.96 -190.44 -1.71 -0.33 16 29 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.14 1.60 3.86 -102.89 -0.40 1.20 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.84 6.29 -51.93 -0.33 0.51 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.05 0.93 6.16 -51.93 -0.32 0.61 16 39 H 0.05 1.15 7.90 -51.93 -0.41 0.74 16 40 H 0.02 0.40 7.83 -51.93 -0.41 0.00 16 41 H 0.27 8.32 7.45 -40.82 -0.30 8.01 16 42 H 0.02 0.63 7.79 -51.93 -0.40 0.23 16 43 H 0.08 2.16 6.14 -51.93 -0.32 1.84 16 44 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.10 1.68 7.10 -51.93 -0.37 1.31 16 LS Contribution 365.15 15.07 5.50 5.50 Total: -1.00 -35.32 365.15 -9.65 -44.97 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -8.41 Total: 0.57 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -1.67 Total: 1.70 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.26 Total: -56.87 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.23 Total: -16.43 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.11 Total: 20.56 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.32 -9.65 -44.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949041253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.277 kcal (2) G-P(sol) polarization free energy of solvation -35.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds