Wall clock time and date at job start Tue Mar 31 2020 18:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35370 * 126.38668 * 2 1 4 4 C 1.41501 * 105.49975 * 180.14309 * 3 2 1 5 5 C 1.47711 * 126.51447 * 179.84764 * 4 3 2 6 6 O 1.21577 * 119.99832 * 5.17130 * 5 4 3 7 7 N 1.34773 * 120.00041 * 185.17877 * 5 4 3 8 8 C 1.47160 * 120.98449 * 356.14235 * 7 5 4 9 9 C 1.53302 * 108.37318 * 129.42844 * 8 7 5 10 10 O 1.42972 * 109.22644 * 52.35032 * 9 8 7 11 11 C 1.42902 * 114.20910 * 297.50327 * 10 9 8 12 12 C 1.52989 * 109.55979 * 302.53154 * 11 10 9 13 13 C 1.53198 * 109.34420 * 300.95779 * 12 11 10 14 14 N 1.46934 * 108.77472 * 305.42836 * 13 12 11 15 15 C 1.36936 * 120.64428 * 233.65467 * 14 13 12 16 16 H 1.08001 * 119.99771 * 21.24885 * 15 14 13 17 17 C 1.38817 * 120.00215 * 201.25135 * 15 14 13 18 18 N 1.31618 * 119.99752 * 35.53709 * 17 15 14 19 19 Si 1.86800 * 119.99914 * 215.53710 * 17 15 14 20 20 H 1.48506 * 109.46545 * 179.97438 * 19 17 15 21 21 H 1.48491 * 109.47274 * 299.99719 * 19 17 15 22 22 H 1.48500 * 109.47084 * 60.00099 * 19 17 15 23 23 C 1.46934 * 118.71306 * 53.92983 * 14 13 12 24 24 C 1.52992 * 109.54984 * 182.22690 * 11 10 9 25 25 C 1.47153 * 120.98756 * 176.16006 * 7 5 4 26 26 N 1.31811 * 106.96493 * 359.58240 * 4 3 2 27 27 N 1.28469 * 110.07472 * 0.26243 * 26 4 3 28 28 H 0.96997 * 124.88159 * 180.02562 * 27 26 4 29 29 H 1.09007 * 109.47307 * 270.29563 * 1 2 3 30 30 H 1.08998 * 109.47136 * 30.29738 * 1 2 3 31 31 H 1.08995 * 109.47431 * 150.29920 * 1 2 3 32 32 H 1.07997 * 127.24507 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.67934 * 249.14358 * 8 7 5 34 34 H 1.08992 * 109.68234 * 9.71005 * 8 7 5 35 35 H 1.08992 * 109.51313 * 172.27517 * 9 8 7 36 36 H 1.09001 * 109.51331 * 292.37702 * 9 8 7 37 37 H 1.08998 * 109.48843 * 180.99335 * 12 11 10 38 38 H 1.09000 * 109.51263 * 60.92647 * 12 11 10 39 39 H 1.09003 * 109.58205 * 185.64555 * 13 12 11 40 40 H 1.08992 * 109.70951 * 65.28511 * 13 12 11 41 41 H 0.96995 * 120.00097 * 5.74710 * 18 17 15 42 42 H 1.08991 * 109.58661 * 65.85181 * 23 14 13 43 43 H 1.09005 * 109.58280 * 186.28201 * 23 14 13 44 44 H 1.09002 * 109.49058 * 178.99974 * 24 11 10 45 45 H 1.09002 * 109.49252 * 299.05549 * 24 11 10 46 46 H 1.09003 * 109.67129 * 110.72526 * 25 7 5 47 47 H 1.09001 * 109.70763 * 350.20284 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6320 0.5853 -0.0034 5 6 4.8765 1.3811 -0.0079 6 8 4.8239 2.5921 0.0860 7 7 6.0701 0.7647 -0.1162 8 6 6.1646 -0.7035 -0.1465 9 6 7.0219 -1.1078 -1.3514 10 8 8.2596 -0.3934 -1.3095 11 6 8.1208 1.0256 -1.4068 12 6 7.3854 1.3808 -2.7005 13 6 8.1749 0.8414 -3.8974 14 7 9.5509 1.3515 -3.8250 15 6 10.1079 2.0106 -4.8882 16 1 9.4731 2.4618 -5.6365 17 6 11.4884 2.0990 -5.0043 18 7 12.2467 1.0946 -4.6189 19 14 12.2696 3.6432 -5.7076 20 1 13.7463 3.4871 -5.7242 21 1 11.7786 3.8598 -7.0921 22 1 11.9051 4.8102 -4.8647 23 6 10.3199 1.1354 -2.5917 24 6 9.5052 1.6766 -1.4070 25 6 7.3176 1.5400 -0.2072 26 7 3.5419 -0.7297 0.0040 27 7 2.3080 -1.0871 0.0061 28 1 1.9965 -2.0057 0.0116 29 1 -0.3634 0.0053 1.0277 30 1 -0.3633 0.8873 -0.5184 31 1 -0.3634 -0.8926 -0.5091 32 1 2.0057 2.1260 -0.0004 33 1 6.6307 -1.0604 0.7719 34 1 5.1679 -1.1336 -0.2442 35 1 7.2186 -2.1792 -1.3151 36 1 6.4921 -0.8658 -2.2727 37 1 7.2957 2.4640 -2.7821 38 1 6.3915 0.9333 -2.6889 39 1 7.7089 1.1774 -4.8238 40 1 8.1872 -0.2481 -3.8688 41 1 11.8401 0.2620 -4.3322 42 1 10.5020 0.0693 -2.4568 43 1 11.2702 1.6654 -2.6561 44 1 9.3988 2.7575 -1.4992 45 1 10.0187 1.4397 -0.4752 46 1 7.8980 1.4097 0.7062 47 1 7.0849 2.5957 -0.3467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949041253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:32 Heat of formation + Delta-G solvation = 15.087304 kcal Electronic energy + Delta-G solvation = -30299.897716 eV Core-core repulsion = 26291.816878 eV Total energy + Delta-G solvation = -4008.080837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.80115 -41.77996 -39.94818 -38.02396 -35.93959 -34.87308 -33.76110 -33.11393 -32.73872 -31.56231 -30.09949 -28.67112 -27.91320 -26.19561 -24.83376 -24.49577 -23.92123 -22.31043 -22.28008 -20.59085 -20.07843 -19.42842 -19.00138 -17.86949 -17.27839 -17.17131 -16.83656 -16.62063 -16.23388 -15.95562 -15.80291 -15.46616 -15.29822 -15.21521 -14.97102 -14.86894 -14.46746 -14.09879 -13.77038 -13.69832 -13.64823 -13.43140 -13.34916 -13.04431 -12.89471 -12.59840 -12.52547 -12.14138 -12.03727 -11.98432 -11.88528 -11.75766 -11.55493 -11.35143 -10.94548 -10.84609 -10.50984 -10.35918 -9.97477 -9.61721 -8.96945 -8.34597 -5.27921 0.37011 1.07113 1.58343 1.59469 1.65418 1.85486 2.01742 2.21451 2.65084 2.73173 3.12561 3.16573 3.44055 3.63168 3.68416 3.74798 3.80537 3.90004 3.98980 4.17035 4.27506 4.28523 4.32940 4.48167 4.50839 4.55352 4.56231 4.60256 4.72167 4.76913 4.80525 4.84080 4.86309 4.92994 5.00435 5.02712 5.10262 5.12984 5.16802 5.22357 5.40748 5.47032 5.82999 6.05951 6.21148 6.23935 6.34927 6.75870 6.98915 7.02263 7.79442 8.24396 8.93835 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024162 B = 0.002847 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.544862 B = 9833.213068 C =10039.189724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.042 3.958 3 C -0.205 4.205 4 C -0.029 4.029 5 C 0.596 3.404 6 O -0.570 6.570 7 N -0.597 5.597 8 C 0.051 3.949 9 C 0.042 3.958 10 O -0.380 6.380 11 C 0.126 3.874 12 C -0.137 4.137 13 C 0.157 3.843 14 N -0.613 5.613 15 C -0.368 4.368 16 H 0.048 0.952 17 C -0.068 4.068 18 N -0.925 5.925 19 Si 1.104 2.896 20 H -0.290 1.290 21 H -0.277 1.277 22 H -0.282 1.282 23 C 0.167 3.833 24 C -0.113 4.113 25 C 0.097 3.903 26 N -0.266 5.266 27 N -0.364 5.364 28 H 0.463 0.537 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.161 0.839 33 H 0.082 0.918 34 H 0.155 0.845 35 H 0.124 0.876 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.043 0.957 40 H 0.015 0.985 41 H 0.252 0.748 42 H 0.008 0.992 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.827 -7.573 13.506 30.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.233 4.233 4 C -0.188 4.188 5 C 0.384 3.616 6 O -0.448 6.448 7 N -0.329 5.329 8 C -0.072 4.072 9 C -0.035 4.035 10 O -0.299 6.299 11 C 0.086 3.914 12 C -0.176 4.176 13 C 0.031 3.969 14 N -0.338 5.338 15 C -0.497 4.497 16 H 0.066 0.934 17 C -0.266 4.266 18 N -0.565 5.565 19 Si 0.929 3.071 20 H -0.216 1.216 21 H -0.203 1.203 22 H -0.208 1.208 23 C 0.041 3.959 24 C -0.152 4.152 25 C -0.026 4.026 26 N -0.103 5.103 27 N -0.080 5.080 28 H 0.312 0.688 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.178 0.822 33 H 0.101 0.899 34 H 0.172 0.828 35 H 0.142 0.858 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.033 0.967 41 H 0.061 0.939 42 H 0.026 0.974 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.587 -7.205 13.230 27.987 hybrid contribution -1.785 -0.456 -0.022 1.842 sum -25.372 -7.661 13.208 29.612 Atomic orbital electron populations 1.20564 0.83160 1.05628 1.04922 1.21929 0.96991 0.85803 1.03756 1.21708 0.90079 1.01008 1.10542 1.21663 0.94702 0.90445 1.11949 1.17412 0.82259 0.86137 0.75814 1.90759 1.86902 1.14739 1.52407 1.48007 1.05256 1.08448 1.71212 1.23465 1.06066 0.78312 0.99345 1.23139 0.85318 0.98025 0.97055 1.88009 1.30398 1.17445 1.94036 1.21508 0.95329 0.81699 0.92854 1.22306 0.98329 1.01008 0.95994 1.20771 0.85272 0.95091 0.95720 1.44389 1.11283 1.66290 1.11802 1.20120 0.92632 1.31098 1.05829 0.93382 1.26976 0.94020 1.04465 1.01119 1.70911 1.38142 1.02368 1.45081 0.83017 0.74930 0.73113 0.76067 1.21592 1.20303 1.20817 1.20726 0.94179 0.96273 0.84734 1.21985 0.94001 0.99676 0.99519 1.22279 0.84468 0.97064 0.98749 1.72935 1.02627 1.13687 1.21080 1.43588 1.02185 1.10804 1.51454 0.68841 0.88579 0.88834 0.88587 0.82172 0.89939 0.82826 0.85788 0.93504 0.92348 0.91548 0.93837 0.96706 0.93865 0.97432 0.93274 0.90847 0.89892 0.89383 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.22 10.44 71.23 0.74 0.53 16 2 C 0.04 0.48 7.23 41.40 0.30 0.78 16 3 C -0.21 -4.05 10.73 22.41 0.24 -3.81 16 4 C -0.03 -0.71 6.91 42.46 0.29 -0.42 16 5 C 0.60 18.48 7.71 86.75 0.67 19.14 16 6 O -0.57 -21.28 16.42 -3.96 -0.06 -21.35 16 7 N -0.60 -17.28 2.52 -820.95 -2.07 -19.36 16 8 C 0.05 1.19 6.50 86.35 0.56 1.76 16 9 C 0.04 1.11 6.60 72.08 0.48 1.59 16 10 O -0.38 -13.26 9.00 -148.98 -1.34 -14.60 16 11 C 0.13 4.49 0.68 -10.71 -0.01 4.48 16 12 C -0.14 -5.27 4.33 30.66 0.13 -5.14 16 13 C 0.16 7.16 6.28 86.36 0.54 7.70 16 14 N -0.61 -32.61 2.91 -698.21 -2.03 -34.64 16 15 C -0.37 -21.58 9.44 84.03 0.79 -20.78 16 16 H 0.05 2.85 7.99 -2.91 -0.02 2.83 16 17 C -0.07 -4.00 4.43 84.86 0.38 -3.62 16 18 N -0.92 -57.73 12.35 21.65 0.27 -57.46 16 19 Si 1.10 52.42 30.04 68.60 2.06 54.48 16 20 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 C 0.17 8.32 4.71 86.51 0.41 8.73 16 24 C -0.11 -4.44 5.12 30.80 0.16 -4.29 16 25 C 0.10 3.05 5.28 86.34 0.46 3.51 16 26 N -0.27 -4.97 8.59 -48.17 -0.41 -5.38 16 27 N -0.36 -3.90 6.83 -47.93 -0.33 -4.23 16 28 H 0.46 1.03 8.96 -220.00 -1.97 -0.95 16 29 H 0.10 0.04 8.14 -2.38 -0.02 0.03 16 30 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.16 3.20 3.86 -68.31 -0.26 2.93 16 35 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.05 1.34 6.29 -2.39 -0.02 1.32 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.07 2.36 6.16 -2.39 -0.01 2.34 16 39 H 0.04 2.00 7.90 -2.39 -0.02 1.98 16 40 H 0.02 0.69 7.83 -2.39 -0.02 0.67 16 41 H 0.25 16.24 7.45 -92.71 -0.69 15.55 16 42 H 0.01 0.40 7.79 -2.39 -0.02 0.38 16 43 H 0.05 2.73 6.14 -2.38 -0.01 2.72 16 44 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 45 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 46 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 47 H 0.09 2.99 7.10 -2.39 -0.02 2.98 16 Total: -1.00 -79.34 365.15 1.07 -78.27 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -1.14 Total: 14.12 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 6.14 Total: 10.15 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -4.58 Total: -121.07 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -1.41 Total: -35.95 kcal Atomic # 14 Polarization: 52.42 SS G_CDS: 2.06 Total: 54.48 kcal Total: -79.34 1.07 -78.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949041253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.354 kcal (2) G-P(sol) polarization free energy of solvation -79.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds