Wall clock time and date at job start Tue Mar 31 2020 19:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32130 * 119.90376 * 2 1 4 4 C 1.32087 * 120.07691 * 179.97438 * 3 2 1 5 5 C 1.50691 * 120.06777 * 179.97438 * 4 3 2 6 6 C 1.39443 * 119.86771 * 0.02746 * 4 3 2 7 7 C 1.48154 * 120.09520 * 180.02562 * 6 4 3 8 8 O 1.21506 * 120.00042 * 5.77680 * 7 6 4 9 9 N 1.34774 * 119.99711 * 185.78076 * 7 6 4 10 10 C 1.46497 * 119.99862 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.47348 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.87894 * 302.56821 * 11 10 9 13 13 C 1.54900 * 111.00683 * 66.44922 * 11 10 9 14 14 N 1.47421 * 104.83473 * 155.08715 * 13 11 10 15 15 C 1.36938 * 125.64992 * 155.83714 * 14 13 11 16 16 H 1.07994 * 120.00056 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99813 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00229 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99816 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47113 * 60.00261 * 19 17 15 21 21 H 1.48503 * 109.46921 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47229 * 299.99621 * 19 17 15 23 23 C 1.47022 * 108.69957 * 335.87132 * 14 13 11 24 24 C 1.54322 * 107.27532 * 1.05989 * 23 14 13 25 25 H 1.08999 * 110.72216 * 140.54939 * 24 23 14 26 26 O 1.42896 * 110.72026 * 263.83165 * 24 23 14 27 27 N 1.33004 * 119.80770 * 359.94937 * 6 4 3 28 28 C 1.31802 * 119.92679 * 0.02936 * 27 6 4 29 29 C 1.50695 * 119.93792 * 179.97438 * 28 27 6 30 30 H 1.08991 * 109.47103 * 270.02250 * 1 2 3 31 31 H 1.08997 * 109.47117 * 30.02094 * 1 2 3 32 32 H 1.09001 * 109.47067 * 150.01880 * 1 2 3 33 33 H 1.09003 * 109.47075 * 96.71469 * 5 4 3 34 34 H 1.09005 * 109.47713 * 216.71333 * 5 4 3 35 35 H 1.09001 * 109.47478 * 336.71671 * 5 4 3 36 36 H 0.97004 * 120.00664 * 359.97438 * 9 7 6 37 37 H 1.09000 * 109.47184 * 299.99702 * 10 9 7 38 38 H 1.09002 * 109.47620 * 59.99860 * 10 9 7 39 39 H 1.08998 * 110.36767 * 273.92879 * 13 11 10 40 40 H 1.09007 * 110.36630 * 36.13651 * 13 11 10 41 41 H 0.96993 * 120.00134 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.88216 * 120.47501 * 23 14 13 43 43 H 1.09003 * 109.88241 * 241.48731 * 23 14 13 44 44 H 0.96701 * 113.99963 * 293.52273 * 26 24 23 45 45 H 1.08992 * 109.47490 * 89.99184 * 29 28 27 46 46 H 1.09003 * 109.47251 * 210.00031 * 29 28 27 47 47 H 1.08999 * 109.46910 * 329.99502 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1454 0.0000 4 6 3.4866 1.1494 0.0005 5 6 4.2376 2.4558 -0.0001 6 6 4.1847 -0.0577 0.0005 7 6 5.6662 -0.0591 0.0016 8 8 6.2747 0.9872 0.1085 9 7 6.3390 -1.2210 -0.1160 10 6 7.8040 -1.2224 -0.1154 11 6 8.3128 -2.6580 -0.2615 12 1 7.9245 -3.2908 0.5365 13 6 7.9531 -3.2356 -1.6531 14 7 8.9602 -4.2839 -1.8983 15 6 8.8061 -5.3593 -2.7320 16 1 7.8835 -5.4919 -3.2774 17 6 9.8355 -6.2795 -2.8753 18 7 10.9594 -6.1187 -2.2095 19 14 9.6251 -7.7468 -4.0120 20 1 9.3757 -7.2692 -5.3958 21 1 10.8590 -8.5727 -3.9877 22 1 8.4732 -8.5653 -3.5557 23 6 10.1571 -3.9840 -1.0989 24 6 9.8634 -2.6973 -0.2991 25 1 10.2719 -2.7681 0.7090 26 8 10.3819 -1.5512 -0.9770 27 7 3.5166 -1.2078 0.0009 28 6 2.1986 -1.2027 0.0009 29 6 1.4414 -2.5056 0.0008 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 4.5225 2.7116 1.0205 34 1 5.1332 2.3599 -0.6140 35 1 3.6006 3.2410 -0.4071 36 1 5.8533 -2.0564 -0.2010 37 1 8.1682 -0.6217 -0.9489 38 1 8.1674 -0.8014 0.8220 39 1 6.9524 -3.6672 -1.6376 40 1 8.0186 -2.4586 -2.4148 41 1 11.6788 -6.7615 -2.3099 42 1 10.3616 -4.8073 -0.4144 43 1 11.0124 -3.8275 -1.7563 44 1 11.3473 -1.5278 -1.0280 45 1 1.2589 -2.8198 1.0283 46 1 0.4894 -2.3726 -0.5131 47 1 2.0284 -3.2668 -0.5131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958240212.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:39 Heat of formation + Delta-G solvation = -12.789732 kcal Electronic energy + Delta-G solvation = -28841.256920 eV Core-core repulsion = 24831.967243 eV Total energy + Delta-G solvation = -4009.289676 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72256 -39.51875 -38.26450 -35.51875 -34.85957 -34.59554 -34.49861 -32.13564 -30.46733 -29.90700 -29.07579 -27.76865 -26.54951 -25.35364 -23.99329 -23.46486 -22.13666 -20.89191 -20.16005 -19.73833 -18.54567 -17.57156 -17.33242 -16.33173 -16.11187 -15.66804 -15.45172 -15.00478 -14.84554 -14.44393 -14.10292 -13.79797 -13.76683 -13.67793 -13.48081 -13.28113 -13.18192 -12.95559 -12.75620 -12.57782 -12.43239 -12.41302 -12.15291 -11.87193 -11.80131 -11.42690 -11.21988 -11.04885 -10.80773 -10.64413 -10.46411 -10.22627 -10.06448 -9.96318 -9.78753 -9.29104 -9.23706 -9.17631 -8.83831 -8.66362 -6.87129 -5.75116 -3.08049 0.15199 0.76022 2.59719 3.01752 3.38722 3.42956 3.44080 3.47909 3.65261 3.68459 4.06637 4.34433 4.45998 4.61169 4.69700 4.80377 4.90916 5.02855 5.11064 5.11443 5.24991 5.31674 5.36327 5.41631 5.48468 5.53370 5.55753 5.58779 5.61546 5.70489 5.90039 5.93669 6.01855 6.08998 6.22204 6.35969 6.39849 6.50461 6.61037 6.89312 6.90721 7.35394 7.37969 7.47514 7.59862 7.73270 8.14697 8.20164 8.23378 9.17833 9.78407 10.44125 11.36950 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.002772 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.205366 B =10097.317063 C =11752.021073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.105 3.895 3 N -0.444 5.444 4 C 0.138 3.862 5 C -0.105 4.105 6 C 0.025 3.975 7 C 0.572 3.428 8 O -0.527 6.527 9 N -0.702 5.702 10 C 0.138 3.862 11 C -0.110 4.110 12 H 0.089 0.911 13 C 0.145 3.855 14 N -0.602 5.602 15 C -0.227 4.227 16 H 0.078 0.922 17 C -0.009 4.009 18 N -0.926 5.926 19 Si 0.914 3.086 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.153 3.847 24 C 0.083 3.917 25 H 0.057 0.943 26 O -0.564 6.564 27 N -0.405 5.405 28 C 0.069 3.931 29 C -0.104 4.104 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.410 0.590 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.037 0.963 40 H 0.025 0.975 41 H 0.253 0.747 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.375 0.625 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.465 11.863 7.687 22.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.037 4.037 3 N -0.160 5.160 4 C -0.002 4.002 5 C -0.162 4.162 6 C -0.116 4.116 7 C 0.356 3.644 8 O -0.404 6.404 9 N -0.353 5.353 10 C 0.015 3.985 11 C -0.129 4.129 12 H 0.107 0.893 13 C 0.019 3.981 14 N -0.329 5.329 15 C -0.355 4.355 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.573 5.573 19 Si 0.744 3.256 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.028 3.972 24 C 0.023 3.977 25 H 0.075 0.925 26 O -0.369 6.369 27 N -0.122 5.122 28 C -0.074 4.074 29 C -0.161 4.161 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.089 0.911 36 H 0.246 0.754 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.222 0.778 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.438 12.548 7.629 22.798 hybrid contribution 0.342 -1.536 -0.536 1.663 sum -17.096 11.012 7.093 21.537 Atomic orbital electron populations 1.20842 0.87406 1.04343 1.03795 1.22419 0.98580 0.88933 0.93781 1.68308 1.07862 1.28827 1.10975 1.22354 0.89714 0.96705 0.91451 1.21053 1.00065 0.90516 1.04609 1.22016 0.95878 0.90161 1.03580 1.17546 0.84808 0.84409 0.77620 1.90739 1.68480 1.30872 1.50334 1.45980 1.08287 1.09208 1.71801 1.21282 0.77084 0.97351 1.02758 1.22681 0.95078 0.94780 1.00408 0.89261 1.21559 0.93042 0.91334 0.92188 1.44357 1.12162 1.25023 1.51332 1.19031 0.99957 0.98778 1.17723 0.90438 1.24791 0.96210 0.99226 1.00289 1.69916 1.05221 1.37278 1.44931 0.86171 0.76801 0.82218 0.80415 1.21164 1.21597 1.21148 1.21860 0.90486 0.91415 0.93442 1.23113 0.92421 0.87478 0.94663 0.92465 1.86397 1.25739 1.44456 1.80355 1.68167 1.08636 1.28593 1.06824 1.22124 0.90027 0.96977 0.98304 1.20791 0.99344 0.92244 1.03731 0.89531 0.89909 0.89517 0.89536 0.87327 0.91062 0.75406 0.89831 0.91492 0.94504 0.95723 0.93692 0.92963 0.93183 0.77766 0.89776 0.89811 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 9.78 36.01 0.35 -0.26 16 2 C 0.11 1.05 6.79 -82.28 -0.56 0.49 16 3 N -0.44 -5.36 10.34 -5.24 -0.05 -5.42 16 4 C 0.14 1.78 6.82 -82.04 -0.56 1.22 16 5 C -0.11 -1.20 8.88 36.00 0.32 -0.88 16 6 C 0.02 0.35 6.75 -82.84 -0.56 -0.21 16 7 C 0.57 8.62 7.75 -12.19 -0.09 8.52 16 8 O -0.53 -8.70 13.33 5.36 0.07 -8.63 16 9 N -0.70 -10.28 5.40 -61.15 -0.33 -10.61 16 10 C 0.14 2.17 4.74 -4.04 -0.02 2.15 16 11 C -0.11 -1.89 3.03 -88.47 -0.27 -2.16 16 12 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 13 C 0.14 3.01 6.40 -2.54 -0.02 2.99 16 14 N -0.60 -15.27 3.39 -170.08 -0.58 -15.85 16 15 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 18 N -0.93 -26.80 10.31 55.49 0.57 -26.23 16 19 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.15 3.60 5.14 -3.07 -0.02 3.58 16 24 C 0.08 1.51 4.09 -24.90 -0.10 1.41 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 O -0.56 -9.75 12.09 -35.23 -0.43 -10.18 16 27 N -0.40 -5.21 9.65 -5.88 -0.06 -5.27 16 28 C 0.07 0.72 6.79 -82.42 -0.56 0.16 16 29 C -0.10 -0.70 9.78 36.00 0.35 -0.34 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.31 5.94 -51.93 -0.31 0.01 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.11 1.38 5.85 -51.93 -0.30 1.07 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.41 5.73 7.70 -40.82 -0.31 5.41 16 37 H 0.08 1.47 7.42 -51.93 -0.39 1.09 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.03 0.55 8.00 -51.92 -0.42 0.13 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.05 1.35 7.38 -51.93 -0.38 0.96 16 43 H 0.05 1.30 7.43 -51.93 -0.39 0.92 16 44 H 0.38 5.11 9.12 45.56 0.42 5.53 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.36 5.94 -51.93 -0.31 0.05 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 380.24 15.07 5.73 5.73 Total: -1.00 -33.58 380.24 -8.24 -41.82 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.16 Total: 7.78 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: -1.98 Total: 9.88 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.45 Total: -63.38 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.35 Total: -18.81 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.58 -8.24 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958240212.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.030 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds