Wall clock time and date at job start Tue Mar 31 2020 19:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32130 * 119.90376 * 2 1 4 4 C 1.32087 * 120.07691 * 179.97438 * 3 2 1 5 5 C 1.50691 * 120.06777 * 179.97438 * 4 3 2 6 6 C 1.39443 * 119.86771 * 0.02746 * 4 3 2 7 7 C 1.48154 * 120.09520 * 180.02562 * 6 4 3 8 8 O 1.21506 * 120.00042 * 5.77680 * 7 6 4 9 9 N 1.34774 * 119.99711 * 185.78076 * 7 6 4 10 10 C 1.46497 * 119.99862 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.47348 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.87894 * 302.56821 * 11 10 9 13 13 C 1.54900 * 111.00683 * 66.44922 * 11 10 9 14 14 N 1.47421 * 104.83473 * 155.08715 * 13 11 10 15 15 C 1.36938 * 125.64992 * 155.83714 * 14 13 11 16 16 H 1.07994 * 120.00056 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99813 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00229 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99816 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47113 * 60.00261 * 19 17 15 21 21 H 1.48503 * 109.46921 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47229 * 299.99621 * 19 17 15 23 23 C 1.47022 * 108.69957 * 335.87132 * 14 13 11 24 24 C 1.54322 * 107.27532 * 1.05989 * 23 14 13 25 25 H 1.08999 * 110.72216 * 140.54939 * 24 23 14 26 26 O 1.42896 * 110.72026 * 263.83165 * 24 23 14 27 27 N 1.33004 * 119.80770 * 359.94937 * 6 4 3 28 28 C 1.31802 * 119.92679 * 0.02936 * 27 6 4 29 29 C 1.50695 * 119.93792 * 179.97438 * 28 27 6 30 30 H 1.08991 * 109.47103 * 270.02250 * 1 2 3 31 31 H 1.08997 * 109.47117 * 30.02094 * 1 2 3 32 32 H 1.09001 * 109.47067 * 150.01880 * 1 2 3 33 33 H 1.09003 * 109.47075 * 96.71469 * 5 4 3 34 34 H 1.09005 * 109.47713 * 216.71333 * 5 4 3 35 35 H 1.09001 * 109.47478 * 336.71671 * 5 4 3 36 36 H 0.97004 * 120.00664 * 359.97438 * 9 7 6 37 37 H 1.09000 * 109.47184 * 299.99702 * 10 9 7 38 38 H 1.09002 * 109.47620 * 59.99860 * 10 9 7 39 39 H 1.08998 * 110.36767 * 273.92879 * 13 11 10 40 40 H 1.09007 * 110.36630 * 36.13651 * 13 11 10 41 41 H 0.96993 * 120.00134 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.88216 * 120.47501 * 23 14 13 43 43 H 1.09003 * 109.88241 * 241.48731 * 23 14 13 44 44 H 0.96701 * 113.99963 * 293.52273 * 26 24 23 45 45 H 1.08992 * 109.47490 * 89.99184 * 29 28 27 46 46 H 1.09003 * 109.47251 * 210.00031 * 29 28 27 47 47 H 1.08999 * 109.46910 * 329.99502 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1454 0.0000 4 6 3.4866 1.1494 0.0005 5 6 4.2376 2.4558 -0.0001 6 6 4.1847 -0.0577 0.0005 7 6 5.6662 -0.0591 0.0016 8 8 6.2747 0.9872 0.1085 9 7 6.3390 -1.2210 -0.1160 10 6 7.8040 -1.2224 -0.1154 11 6 8.3128 -2.6580 -0.2615 12 1 7.9245 -3.2908 0.5365 13 6 7.9531 -3.2356 -1.6531 14 7 8.9602 -4.2839 -1.8983 15 6 8.8061 -5.3593 -2.7320 16 1 7.8835 -5.4919 -3.2774 17 6 9.8355 -6.2795 -2.8753 18 7 10.9594 -6.1187 -2.2095 19 14 9.6251 -7.7468 -4.0120 20 1 9.3757 -7.2692 -5.3958 21 1 10.8590 -8.5727 -3.9877 22 1 8.4732 -8.5653 -3.5557 23 6 10.1571 -3.9840 -1.0989 24 6 9.8634 -2.6973 -0.2991 25 1 10.2719 -2.7681 0.7090 26 8 10.3819 -1.5512 -0.9770 27 7 3.5166 -1.2078 0.0009 28 6 2.1986 -1.2027 0.0009 29 6 1.4414 -2.5056 0.0008 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 4.5225 2.7116 1.0205 34 1 5.1332 2.3599 -0.6140 35 1 3.6006 3.2410 -0.4071 36 1 5.8533 -2.0564 -0.2010 37 1 8.1682 -0.6217 -0.9489 38 1 8.1674 -0.8014 0.8220 39 1 6.9524 -3.6672 -1.6376 40 1 8.0186 -2.4586 -2.4148 41 1 11.6788 -6.7615 -2.3099 42 1 10.3616 -4.8073 -0.4144 43 1 11.0124 -3.8275 -1.7563 44 1 11.3473 -1.5278 -1.0280 45 1 1.2589 -2.8198 1.0283 46 1 0.4894 -2.3726 -0.5131 47 1 2.0284 -3.2668 -0.5131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958240212.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:38 Heat of formation + Delta-G solvation = -39.205141 kcal Electronic energy + Delta-G solvation = -28842.402378 eV Core-core repulsion = 24831.967243 eV Total energy + Delta-G solvation = -4010.435134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.60446 -40.72710 -39.77365 -36.55656 -36.38882 -35.79814 -35.37221 -33.93254 -31.60204 -31.11956 -29.97238 -29.35514 -27.66463 -26.91901 -25.26006 -24.51856 -23.12284 -22.30007 -21.66616 -21.17096 -19.51739 -19.09670 -18.69908 -17.89976 -17.08337 -16.86501 -16.79386 -16.21365 -16.10103 -15.77160 -15.59422 -15.31692 -14.93198 -14.56839 -14.43883 -14.37286 -14.26757 -13.94748 -13.80533 -13.70544 -13.55119 -13.33092 -13.14671 -13.13981 -13.08498 -12.83017 -12.65134 -12.48300 -12.38301 -12.09807 -11.92809 -11.85974 -11.78916 -11.60512 -11.15074 -10.79343 -10.72678 -10.26216 -10.19330 -9.87295 -8.92403 -7.86883 -5.22269 -0.74288 -0.10353 1.45354 1.48506 1.54660 1.55608 1.91068 2.48134 2.54863 2.79638 2.89784 3.22722 3.26937 3.35010 3.53425 3.56256 3.80264 3.89091 3.91720 3.97967 4.01756 4.16180 4.41073 4.54554 4.56909 4.61068 4.66140 4.69568 4.75876 4.79101 4.80764 4.87010 4.88527 4.97284 4.98006 5.08193 5.17931 5.32419 5.38044 5.40373 5.48265 5.52308 5.69159 6.04421 6.16664 6.33104 6.61424 6.93390 7.00948 7.08348 7.74488 8.39051 9.23125 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.002772 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.205366 B =10097.317063 C =11752.021073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.111 3.889 3 N -0.459 5.459 4 C 0.126 3.874 5 C -0.099 4.099 6 C -0.001 4.001 7 C 0.572 3.428 8 O -0.547 6.547 9 N -0.700 5.700 10 C 0.154 3.846 11 C -0.094 4.094 12 H 0.105 0.895 13 C 0.144 3.856 14 N -0.624 5.624 15 C -0.245 4.245 16 H 0.081 0.919 17 C -0.065 4.065 18 N -0.951 5.951 19 Si 0.979 3.021 20 H -0.280 1.280 21 H -0.293 1.293 22 H -0.274 1.274 23 C 0.160 3.840 24 C 0.098 3.902 25 H 0.090 0.910 26 O -0.570 6.570 27 N -0.422 5.422 28 C 0.065 3.935 29 C -0.102 4.102 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.414 0.586 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.045 0.955 40 H 0.011 0.989 41 H 0.248 0.752 42 H 0.024 0.976 43 H 0.015 0.985 44 H 0.391 0.609 45 H 0.100 0.900 46 H 0.114 0.886 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.226 11.747 8.316 24.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.033 4.033 3 N -0.175 5.175 4 C -0.013 4.013 5 C -0.156 4.156 6 C -0.140 4.140 7 C 0.357 3.643 8 O -0.426 6.426 9 N -0.351 5.351 10 C 0.031 3.969 11 C -0.113 4.113 12 H 0.123 0.877 13 C 0.019 3.981 14 N -0.350 5.350 15 C -0.374 4.374 16 H 0.098 0.902 17 C -0.258 4.258 18 N -0.600 5.600 19 Si 0.807 3.193 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.200 1.200 23 C 0.034 3.966 24 C 0.037 3.963 25 H 0.107 0.893 26 O -0.377 6.377 27 N -0.140 5.140 28 C -0.080 4.080 29 C -0.159 4.159 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.132 0.868 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.250 0.750 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.029 0.971 41 H 0.057 0.943 42 H 0.042 0.958 43 H 0.033 0.967 44 H 0.241 0.759 45 H 0.118 0.882 46 H 0.132 0.868 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.193 12.467 8.260 25.127 hybrid contribution 1.068 -1.493 -0.763 1.988 sum -19.125 10.973 7.496 23.289 Atomic orbital electron populations 1.21043 0.84053 1.05785 1.05329 1.23194 1.00632 0.88184 0.91282 1.68392 1.07338 1.29962 1.11792 1.22494 0.90370 0.96772 0.91683 1.20965 0.99558 0.90609 1.04457 1.21786 0.95075 0.91022 1.06165 1.17777 0.85593 0.83995 0.76935 1.90722 1.69192 1.31440 1.51239 1.45886 1.07759 1.09458 1.71972 1.21009 0.77760 0.95705 1.02469 1.22567 0.94482 0.95742 0.98527 0.87702 1.21632 0.92533 0.90018 0.93914 1.44677 1.13800 1.25356 1.51178 1.19420 1.00137 0.99677 1.18118 0.90158 1.25630 0.96072 1.02010 1.02043 1.70133 1.05731 1.37912 1.46196 0.85146 0.76703 0.78905 0.78548 1.20643 1.21948 1.20001 1.21698 0.89076 0.93252 0.92551 1.22933 0.93229 0.85059 0.95038 0.89268 1.86377 1.27461 1.43481 1.80421 1.68149 1.10042 1.28294 1.07485 1.22826 0.89408 0.98824 0.96971 1.20955 0.99947 0.89954 1.05045 0.87642 0.89716 0.86820 0.89335 0.88921 0.89718 0.74989 0.91758 0.90382 0.93639 0.97095 0.94312 0.95804 0.96656 0.75902 0.88180 0.86780 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.78 71.24 0.70 -0.11 16 2 C 0.11 1.95 6.79 42.63 0.29 2.24 16 3 N -0.46 -10.52 10.34 -170.48 -1.76 -12.28 16 4 C 0.13 3.22 6.82 42.81 0.29 3.51 16 5 C -0.10 -2.26 8.88 71.23 0.63 -1.63 16 6 C 0.00 -0.03 6.75 41.89 0.28 0.25 16 7 C 0.57 17.33 7.75 86.88 0.67 18.00 16 8 O -0.55 -18.32 13.33 -3.74 -0.05 -18.37 16 9 N -0.70 -20.25 5.40 -465.68 -2.51 -22.77 16 10 C 0.15 4.71 4.74 86.38 0.41 5.12 16 11 C -0.09 -3.13 3.03 -9.40 -0.03 -3.16 16 12 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 13 C 0.14 6.00 6.40 86.85 0.56 6.56 16 14 N -0.62 -32.15 3.39 -692.01 -2.35 -34.50 16 15 C -0.24 -13.79 10.28 84.03 0.86 -12.93 16 16 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 17 C -0.06 -3.67 5.49 84.86 0.47 -3.20 16 18 N -0.95 -56.52 10.31 21.65 0.22 -56.29 16 19 Si 0.98 45.61 29.55 68.60 2.03 47.64 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 23 C 0.16 7.67 5.14 86.73 0.45 8.12 16 24 C 0.10 3.47 4.09 31.78 0.13 3.60 16 25 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 26 O -0.57 -19.29 12.09 -148.98 -1.80 -21.10 16 27 N -0.42 -10.52 9.65 -172.52 -1.67 -12.19 16 28 C 0.06 1.22 6.79 42.68 0.29 1.51 16 29 C -0.10 -1.05 9.78 71.23 0.70 -0.35 16 30 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.11 0.27 5.94 -2.39 -0.01 0.26 16 33 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.09 2.43 5.85 -2.38 -0.01 2.42 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.41 11.34 7.70 -92.71 -0.71 10.62 16 37 H 0.06 2.25 7.42 -2.39 -0.02 2.23 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.01 0.50 8.00 -2.38 -0.02 0.48 16 41 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.02 1.27 7.38 -2.39 -0.02 1.25 16 43 H 0.02 0.83 7.43 -2.39 -0.02 0.81 16 44 H 0.39 10.39 9.12 -74.06 -0.68 9.71 16 45 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.11 0.46 5.94 -2.39 -0.01 0.44 16 47 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -74.91 380.24 -1.57 -76.48 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -0.37 Total: 25.86 kcal Atomic # 6 Polarization: 20.83 SS G_CDS: 6.69 Total: 27.52 kcal Atomic # 7 Polarization: -129.97 SS G_CDS: -8.07 Total: -138.03 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.85 Total: -39.47 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -74.91 -1.57 -76.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958240212.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.274 kcal (2) G-P(sol) polarization free energy of solvation -74.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds