Wall clock time and date at job start Tue Mar 31 2020 19:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32138 * 119.90796 * 2 1 4 4 C 1.32079 * 120.07866 * 179.75467 * 3 2 1 5 5 C 1.50697 * 120.06826 * 180.25549 * 4 3 2 6 6 C 1.39442 * 119.86823 * 0.52381 * 4 3 2 7 7 C 1.48154 * 120.09687 * 179.75997 * 6 4 3 8 8 O 1.21515 * 119.99758 * 354.27763 * 7 6 4 9 9 N 1.34768 * 120.00050 * 174.28076 * 7 6 4 10 10 C 1.46505 * 120.00101 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47369 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.64086 * 303.31321 * 11 10 9 13 13 C 1.54326 * 110.72017 * 66.45544 * 11 10 9 14 14 N 1.47019 * 107.27284 * 140.73469 * 13 11 10 15 15 C 1.36935 * 125.64862 * 181.02530 * 14 13 11 16 16 H 1.07997 * 120.00310 * 11.23110 * 15 14 13 17 17 C 1.38821 * 120.00037 * 191.23056 * 15 14 13 18 18 N 1.31617 * 119.99631 * 31.39646 * 17 15 14 19 19 Si 1.86795 * 119.99928 * 211.40091 * 17 15 14 20 20 H 1.48504 * 109.47442 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46966 * 240.00055 * 19 17 15 22 22 H 1.48502 * 109.47397 * 119.99975 * 19 17 15 23 23 C 1.47426 * 108.70391 * 1.28464 * 14 13 11 24 24 C 1.55126 * 104.72079 * 335.55685 * 23 14 13 25 25 H 1.08999 * 111.19558 * 279.18881 * 24 23 14 26 26 O 1.42896 * 110.94057 * 155.28820 * 24 23 14 27 27 N 1.33005 * 119.80421 * 359.47506 * 6 4 3 28 28 C 1.31798 * 119.93031 * 0.25810 * 27 6 4 29 29 C 1.50699 * 119.93345 * 179.97438 * 28 27 6 30 30 H 1.08997 * 109.46877 * 269.97709 * 1 2 3 31 31 H 1.09000 * 109.46767 * 29.97539 * 1 2 3 32 32 H 1.08998 * 109.46949 * 149.97832 * 1 2 3 33 33 H 1.09008 * 109.47055 * 263.29735 * 5 4 3 34 34 H 1.09004 * 109.47066 * 23.29048 * 5 4 3 35 35 H 1.08995 * 109.47442 * 143.29248 * 5 4 3 36 36 H 0.96999 * 120.00570 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.46938 * 60.00054 * 10 9 7 38 38 H 1.08995 * 109.47073 * 300.00496 * 10 9 7 39 39 H 1.09002 * 109.88100 * 21.31279 * 13 11 10 40 40 H 1.08997 * 110.01254 * 260.22380 * 13 11 10 41 41 H 0.96999 * 120.00076 * 6.32233 * 18 17 15 42 42 H 1.09000 * 110.36350 * 94.48450 * 23 14 13 43 43 H 1.08996 * 110.37004 * 216.80540 * 23 14 13 44 44 H 0.96703 * 114.00362 * 67.95128 * 26 24 23 45 45 H 1.08998 * 109.47342 * 90.00676 * 29 28 27 46 46 H 1.09009 * 109.46641 * 210.00060 * 29 28 27 47 47 H 1.08997 * 109.47470 * 329.99823 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1658 1.1454 0.0000 4 6 3.4866 1.1494 0.0049 5 6 4.2377 2.4558 0.0107 6 6 4.1847 -0.0577 -0.0010 7 6 5.6662 -0.0592 -0.0009 8 8 6.2748 0.9878 -0.1007 9 7 6.3389 -1.2217 0.1097 10 6 7.8039 -1.2232 0.1092 11 6 8.3126 -2.6596 0.2467 12 1 7.9123 -3.1244 1.1478 13 6 7.9497 -3.4893 -1.0029 14 7 9.0981 -4.3583 -1.2985 15 6 9.1851 -5.2377 -2.3445 16 1 8.4516 -5.2090 -3.1367 17 6 10.2161 -6.1664 -2.3867 18 7 10.7137 -6.6484 -1.2677 19 14 10.8972 -6.7315 -4.0317 20 1 10.1714 -6.0449 -5.1304 21 1 10.7188 -8.1999 -4.1631 22 1 12.3426 -6.3996 -4.1095 23 6 10.1381 -4.1306 -0.2787 24 6 9.8636 -2.6988 0.2514 25 1 10.2755 -1.9446 -0.4191 26 8 10.3760 -2.5375 1.5756 27 7 3.5165 -1.2078 -0.0009 28 6 2.1986 -1.2026 -0.0005 29 6 1.4415 -2.5056 -0.0010 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 4.5266 2.7133 -1.0083 34 1 3.5990 3.2403 0.4165 35 1 5.1308 2.3587 0.6280 36 1 5.8532 -2.0575 0.1897 37 1 8.1681 -0.6276 0.9463 38 1 8.1674 -0.7966 -0.8256 39 1 7.7603 -2.8254 -1.8464 40 1 7.0668 -4.0967 -0.8039 41 1 10.3014 -6.4264 -0.4182 42 1 10.0461 -4.8598 0.5262 43 1 11.1293 -4.1844 -0.7290 44 1 11.3414 -2.5554 1.6287 45 1 1.2592 -2.8204 1.0265 46 1 0.4892 -2.3723 -0.5145 47 1 2.0282 -3.2666 -0.5155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958240213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:43 Heat of formation + Delta-G solvation = -17.298596 kcal Electronic energy + Delta-G solvation = -28758.908085 eV Core-core repulsion = 24749.422889 eV Total energy + Delta-G solvation = -4009.485195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.77769 -39.63612 -38.42196 -35.64091 -35.27384 -34.74819 -34.61488 -32.41571 -30.51327 -29.94787 -29.09422 -27.82583 -26.62599 -25.26847 -24.01092 -23.49735 -22.19447 -21.01882 -20.31766 -19.96680 -18.60905 -17.76457 -17.55726 -16.86645 -16.20718 -15.79258 -15.51528 -15.27870 -14.83923 -14.48057 -14.32373 -13.87886 -13.72967 -13.57851 -13.54995 -13.43884 -13.35036 -13.04314 -12.94775 -12.63298 -12.47346 -12.40267 -12.24866 -12.17980 -11.99242 -11.84062 -11.18923 -11.10725 -10.92395 -10.74223 -10.53361 -10.28025 -10.08307 -10.02337 -9.79247 -9.44992 -9.31816 -9.30264 -8.96257 -8.42797 -7.04853 -6.18199 -3.15926 0.09673 0.71345 2.51782 2.90740 3.41457 3.49980 3.52163 3.59131 3.63349 3.66418 4.01417 4.28023 4.40312 4.56409 4.58800 4.71930 4.86262 4.90654 4.98642 5.06532 5.08882 5.21296 5.22039 5.31938 5.32688 5.45031 5.51454 5.54610 5.56085 5.65462 5.68637 5.77174 5.85029 5.89337 6.02568 6.15297 6.18194 6.38605 6.49115 6.65110 6.81072 6.85530 6.90201 7.28226 7.50622 7.69483 7.94844 8.04218 8.41954 8.94170 9.75218 10.27655 11.15613 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014366 B = 0.002657 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.637780 B =10535.642100 C =11646.460167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.107 3.893 3 N -0.444 5.444 4 C 0.138 3.862 5 C -0.105 4.105 6 C 0.024 3.976 7 C 0.574 3.426 8 O -0.527 6.527 9 N -0.702 5.702 10 C 0.133 3.867 11 C -0.105 4.105 12 H 0.088 0.912 13 C 0.142 3.858 14 N -0.600 5.600 15 C -0.341 4.341 16 H 0.070 0.930 17 C -0.023 4.023 18 N -0.914 5.914 19 Si 1.064 2.936 20 H -0.292 1.292 21 H -0.295 1.295 22 H -0.289 1.289 23 C 0.120 3.880 24 C 0.092 3.908 25 H 0.067 0.933 26 O -0.566 6.566 27 N -0.405 5.405 28 C 0.070 3.930 29 C -0.104 4.104 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.412 0.588 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.027 0.973 41 H 0.269 0.731 42 H 0.034 0.966 43 H 0.056 0.944 44 H 0.378 0.622 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.639 13.882 5.171 23.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.036 4.036 3 N -0.159 5.159 4 C -0.002 4.002 5 C -0.162 4.162 6 C -0.118 4.118 7 C 0.358 3.642 8 O -0.404 6.404 9 N -0.352 5.352 10 C 0.009 3.991 11 C -0.124 4.124 12 H 0.107 0.893 13 C 0.016 3.984 14 N -0.328 5.328 15 C -0.468 4.468 16 H 0.087 0.913 17 C -0.225 4.225 18 N -0.554 5.554 19 Si 0.893 3.107 20 H -0.218 1.218 21 H -0.222 1.222 22 H -0.216 1.216 23 C -0.006 4.006 24 C 0.031 3.969 25 H 0.085 0.915 26 O -0.370 6.370 27 N -0.122 5.122 28 C -0.074 4.074 29 C -0.161 4.161 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.248 0.752 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.225 0.775 45 H 0.103 0.897 46 H 0.102 0.898 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.589 13.680 4.420 21.952 hybrid contribution -0.915 0.267 0.576 1.114 sum -17.505 13.947 4.996 22.932 Atomic orbital electron populations 1.20849 0.87345 1.04372 1.03851 1.22434 0.98616 0.88907 0.93615 1.68314 1.07821 1.28825 1.10980 1.22352 0.89741 0.96660 0.91398 1.21050 0.99955 0.90523 1.04696 1.21961 0.95724 0.90220 1.03846 1.17554 0.84914 0.84299 0.77409 1.90743 1.68518 1.30868 1.50274 1.45878 1.07892 1.09292 1.72136 1.21479 0.78075 0.96895 1.02620 1.22400 0.95223 0.94360 1.00413 0.89336 1.21372 0.91720 0.92347 0.92937 1.44427 1.12072 1.45761 1.30580 1.19778 1.15505 1.13370 0.98167 0.91253 1.25699 0.97866 0.94721 1.04232 1.70732 1.45627 1.40061 0.99025 0.83575 0.76453 0.75656 0.74987 1.21789 1.22191 1.21608 1.22188 0.94166 0.92014 0.92281 1.23079 0.92615 0.98050 0.83109 0.91512 1.86412 1.26117 1.96085 1.28414 1.68162 1.08692 1.28570 1.06787 1.22131 0.89984 0.97014 0.98254 1.20800 0.99346 0.92208 1.03792 0.89457 0.89879 0.89493 0.89442 0.91026 0.87446 0.75237 0.90712 0.90834 0.95051 0.95525 0.91941 0.94810 0.92548 0.77501 0.89710 0.89774 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 9.78 36.00 0.35 -0.24 16 2 C 0.11 1.05 6.79 -82.28 -0.56 0.49 16 3 N -0.44 -5.26 10.34 -5.24 -0.05 -5.31 16 4 C 0.14 1.75 6.82 -82.04 -0.56 1.19 16 5 C -0.10 -1.16 8.87 36.00 0.32 -0.84 16 6 C 0.02 0.32 6.75 -82.84 -0.56 -0.24 16 7 C 0.57 8.43 7.75 -12.19 -0.09 8.34 16 8 O -0.53 -8.42 13.34 5.35 0.07 -8.35 16 9 N -0.70 -10.01 5.39 -61.15 -0.33 -10.34 16 10 C 0.13 1.99 5.01 -4.04 -0.02 1.97 16 11 C -0.10 -1.79 2.74 -88.79 -0.24 -2.03 16 12 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 13 C 0.14 2.90 6.52 -3.06 -0.02 2.88 16 14 N -0.60 -15.03 3.34 -169.94 -0.57 -15.60 16 15 C -0.34 -9.57 10.01 -15.06 -0.15 -9.72 16 16 H 0.07 1.95 8.00 -52.49 -0.42 1.53 16 17 C -0.02 -0.67 5.01 -17.43 -0.09 -0.75 16 18 N -0.91 -27.33 12.79 55.49 0.71 -26.62 16 19 Si 1.06 25.24 30.02 -169.99 -5.10 20.14 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.12 2.73 5.01 -2.41 -0.01 2.72 16 24 C 0.09 1.64 3.89 -24.46 -0.10 1.55 16 25 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 26 O -0.57 -9.10 13.47 -35.23 -0.47 -9.58 16 27 N -0.40 -5.16 9.65 -5.88 -0.06 -5.22 16 28 C 0.07 0.72 6.79 -82.43 -0.56 0.16 16 29 C -0.10 -0.69 9.78 36.00 0.35 -0.34 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.30 5.94 -51.93 -0.31 -0.01 16 33 H 0.09 0.95 8.14 -51.92 -0.42 0.52 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.11 1.29 5.86 -51.93 -0.30 0.99 16 36 H 0.41 5.65 7.69 -40.82 -0.31 5.34 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 39 H 0.03 0.64 7.77 -51.93 -0.40 0.24 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.27 8.09 6.18 -40.82 -0.25 7.84 16 42 H 0.03 0.84 6.97 -51.93 -0.36 0.48 16 43 H 0.06 1.39 7.70 -51.93 -0.40 0.99 16 44 H 0.38 4.56 9.12 45.56 0.42 4.98 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.35 5.94 -51.92 -0.31 0.04 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -34.25 381.73 -8.08 -42.34 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.09 Total: 7.68 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -1.94 Total: 5.13 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -0.30 Total: -63.10 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.40 Total: -17.93 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.10 Total: 20.14 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.25 -8.08 -42.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958240213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.037 kcal (2) G-P(sol) polarization free energy of solvation -34.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds