Wall clock time and date at job start Tue Mar 31 2020 18:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30449 * 125.99307 * 2 1 4 4 N 1.39937 * 108.89821 * 180.22824 * 3 2 1 5 5 C 1.46500 * 125.75124 * 179.77549 * 4 3 2 6 6 H 1.09001 * 110.45794 * 27.57970 * 5 4 3 7 7 C 1.54510 * 110.51154 * 264.97379 * 5 4 3 8 8 C 1.54478 * 104.06437 * 241.35867 * 7 5 4 9 9 O 1.44426 * 104.80029 * 23.97737 * 8 7 5 10 10 C 1.44424 * 105.27714 * 319.48617 * 9 8 7 11 11 C 1.34254 * 108.48972 * 359.75128 * 4 3 2 12 12 C 1.38039 * 107.41991 * 0.02562 * 11 4 3 13 13 C 1.47432 * 126.41638 * 179.97438 * 12 11 4 14 14 O 1.21603 * 120.00137 * 180.02562 * 13 12 11 15 15 N 1.34777 * 119.99549 * 0.29251 * 13 12 11 16 16 C 1.47017 * 125.65341 * 359.75404 * 15 13 12 17 17 C 1.54326 * 107.27641 * 181.01724 * 16 15 13 18 18 C 1.55165 * 102.93791 * 22.19503 * 17 16 15 19 19 H 1.08994 * 111.00234 * 82.60458 * 18 17 16 20 20 N 1.46494 * 110.99958 * 206.42235 * 18 17 16 21 21 C 1.36939 * 119.99793 * 204.99591 * 20 18 17 22 22 H 1.08003 * 119.99982 * 0.02562 * 21 20 18 23 23 C 1.38812 * 120.00120 * 180.02562 * 21 20 18 24 24 N 1.31613 * 120.00095 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00061 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47314 * 59.99982 * 25 23 21 27 27 H 1.48494 * 109.47265 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47126 * 300.00433 * 25 23 21 29 29 C 1.47435 * 125.64473 * 179.44284 * 15 13 12 30 30 H 1.09000 * 109.46725 * 270.18799 * 1 2 3 31 31 H 1.09002 * 109.46827 * 30.17607 * 1 2 3 32 32 H 1.08993 * 109.47121 * 150.18621 * 1 2 3 33 33 H 1.09007 * 110.51021 * 0.02562 * 7 5 4 34 34 H 1.09003 * 110.51019 * 122.71206 * 7 5 4 35 35 H 1.09002 * 110.37188 * 142.80564 * 8 7 5 36 36 H 1.09002 * 110.37011 * 265.03379 * 8 7 5 37 37 H 1.08997 * 110.37467 * 281.68354 * 10 9 8 38 38 H 1.09002 * 110.37306 * 159.34272 * 10 9 8 39 39 H 1.08003 * 126.29082 * 179.97438 * 11 4 3 40 40 H 1.09004 * 109.88390 * 300.44229 * 16 15 13 41 41 H 1.09008 * 109.87982 * 61.59965 * 16 15 13 42 42 H 1.09001 * 110.71545 * 140.55421 * 17 16 15 43 43 H 1.08997 * 110.72078 * 263.65494 * 17 16 15 44 44 H 0.96992 * 120.00403 * 25.00296 * 20 18 17 45 45 H 0.97000 * 120.00586 * 179.97438 * 24 23 21 46 46 H 1.08999 * 110.36625 * 274.74840 * 29 15 13 47 47 H 1.08994 * 110.36368 * 37.06966 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6112 0.6441 -0.0053 5 6 4.7788 1.5289 -0.0116 6 1 4.5378 2.4811 0.4609 7 6 5.2805 1.7528 -1.4557 8 6 6.7181 1.1875 -1.4455 9 8 6.7322 0.2348 -0.3601 10 6 5.9726 0.8548 0.7003 11 6 3.6439 -0.6980 -0.0030 12 6 2.3373 -1.1432 0.0031 13 6 1.8914 -2.5485 0.0069 14 8 0.7038 -2.8097 0.0118 15 7 2.8003 -3.5437 0.0104 16 6 4.2603 -3.3709 0.0058 17 6 4.8885 -4.7804 -0.0138 18 6 3.7485 -5.6610 -0.5903 19 1 3.7285 -5.6108 -1.6789 20 7 3.8737 -7.0472 -0.1334 21 6 3.3347 -8.0640 -0.8756 22 1 2.8176 -7.8440 -1.7979 23 6 3.4528 -9.3776 -0.4424 24 7 4.0824 -9.6457 0.6818 25 14 2.7182 -10.7646 -1.4552 26 1 3.3384 -10.7747 -2.8045 27 1 2.9784 -12.0617 -0.7806 28 1 1.2531 -10.5602 -1.5856 29 6 2.4950 -4.9860 0.0261 30 1 -0.3633 0.0034 1.0277 31 1 -0.3633 0.8884 -0.5166 32 1 -0.3633 -0.8916 -0.5109 33 1 4.6595 1.2055 -2.1650 34 1 5.2899 2.8159 -1.6963 35 1 6.9368 0.6896 -2.3902 36 1 7.4382 1.9850 -1.2622 37 1 6.5782 1.6009 1.2147 38 1 5.6185 0.1014 1.4039 39 1 4.5297 -1.3159 -0.0063 40 1 4.5652 -2.8168 -0.8820 41 1 4.5733 -2.8380 0.9036 42 1 5.7616 -4.8043 -0.6659 43 1 5.1531 -5.0987 0.9945 44 1 4.3382 -7.2449 0.6948 45 1 4.1647 -10.5635 0.9847 46 1 2.3404 -5.3300 1.0487 47 1 1.6149 -5.1940 -0.5822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968670025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:44 Heat of formation + Delta-G solvation = 26.410936 kcal Electronic energy + Delta-G solvation = -29283.021256 eV Core-core repulsion = 25275.431448 eV Total energy + Delta-G solvation = -4007.589808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.82552 -39.85575 -39.14527 -37.09396 -34.35734 -34.14654 -31.98391 -31.53285 -30.35593 -29.85194 -29.60552 -27.56085 -27.09358 -24.75435 -23.65980 -23.09457 -22.21098 -20.92060 -20.58646 -19.87990 -19.30592 -17.59541 -17.17072 -16.90308 -16.35353 -16.24180 -15.98552 -15.63872 -15.00966 -14.96035 -14.50854 -14.31841 -13.83598 -13.56137 -13.39998 -13.35489 -13.14864 -12.91604 -12.66476 -12.46801 -12.38164 -12.23171 -12.13722 -12.10625 -11.96852 -11.70446 -11.34820 -11.09416 -10.96154 -10.76125 -10.71414 -10.48690 -10.30547 -10.05816 -9.76845 -9.55853 -9.46139 -8.98721 -8.78979 -8.24298 -7.06010 -5.82024 -3.12588 1.38960 1.98868 2.11865 3.21196 3.33398 3.44059 3.48478 3.49628 3.61084 3.82076 3.91135 4.27712 4.35541 4.40502 4.50250 4.56317 4.62047 4.85570 4.92878 4.95124 4.97391 5.10296 5.14081 5.18516 5.20785 5.34504 5.37521 5.41645 5.51210 5.67644 5.73519 5.76932 5.86233 5.95581 5.97117 6.06304 6.15432 6.29388 6.40557 6.46344 6.57667 6.62348 6.71084 6.91752 7.45986 7.67348 7.89051 8.35564 8.53689 9.47591 10.00812 10.35782 11.39991 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015292 B = 0.002814 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.627984 B = 9946.383556 C =11310.351368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.133 3.867 3 N -0.306 5.306 4 N -0.358 5.358 5 C 0.126 3.874 6 H 0.121 0.879 7 C -0.168 4.168 8 C 0.044 3.956 9 O -0.364 6.364 10 C 0.033 3.967 11 C 0.091 3.909 12 C -0.279 4.279 13 C 0.602 3.398 14 O -0.546 6.546 15 N -0.611 5.611 16 C 0.099 3.901 17 C -0.142 4.142 18 C 0.172 3.828 19 H 0.068 0.932 20 N -0.711 5.711 21 C -0.248 4.248 22 H 0.072 0.928 23 C -0.008 4.008 24 N -0.931 5.931 25 Si 0.909 3.091 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.284 1.284 29 C 0.084 3.916 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.195 0.805 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.387 0.613 45 H 0.257 0.743 46 H 0.067 0.933 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.900 27.206 -1.318 27.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.035 4.035 3 N -0.127 5.127 4 N -0.137 5.137 5 C 0.023 3.977 6 H 0.139 0.861 7 C -0.206 4.206 8 C -0.033 4.033 9 O -0.283 6.283 10 C -0.045 4.045 11 C -0.058 4.058 12 C -0.293 4.293 13 C 0.392 3.608 14 O -0.425 6.425 15 N -0.344 5.344 16 C -0.024 4.024 17 C -0.181 4.181 18 C 0.060 3.940 19 H 0.086 0.914 20 N -0.350 5.350 21 C -0.379 4.379 22 H 0.090 0.910 23 C -0.205 4.205 24 N -0.578 5.578 25 Si 0.739 3.261 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.211 1.211 29 C -0.041 4.041 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.123 0.877 39 H 0.212 0.788 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.221 0.779 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.415 28.116 -1.430 28.668 hybrid contribution -0.174 -1.392 -0.170 1.413 sum 5.241 26.724 -1.600 27.280 Atomic orbital electron populations 1.20341 0.85629 1.03987 1.03529 1.22477 0.97217 0.88726 0.95058 1.77132 0.85846 1.22709 1.26997 1.48417 1.05237 1.04416 1.55609 1.22757 0.82950 0.94208 0.97751 0.86130 1.23478 0.97605 1.03636 0.95904 1.23522 0.95190 0.92729 0.91881 1.89241 1.73717 1.40511 1.24789 1.23872 0.90368 0.98878 0.91370 1.23936 0.99809 0.85178 0.96924 1.20321 0.91999 0.94629 1.22386 1.16874 0.84849 0.82774 0.76328 1.90728 1.15854 1.83957 1.51973 1.48339 1.06043 1.07389 1.72671 1.22250 0.81019 0.98963 1.00198 1.22965 0.99271 0.93055 1.02776 1.21363 0.90301 0.85291 0.97069 0.91377 1.42293 1.66402 0.99046 1.27296 1.19232 1.29117 0.86202 1.03374 0.90957 1.24760 1.00827 0.97382 0.97518 1.69644 1.46846 1.19113 1.22228 0.86247 0.78985 0.81565 0.79266 1.21153 1.21658 1.21080 1.23438 1.01776 0.77009 1.01857 0.90259 0.91252 0.88462 0.89352 0.88668 0.88140 0.91332 0.89328 0.87706 0.78811 0.91615 0.91979 0.90146 0.90389 0.77866 0.93308 0.91498 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 9.92 36.01 0.36 -0.57 16 2 C 0.13 1.86 7.26 -82.02 -0.60 1.26 16 3 N -0.31 -3.98 12.50 33.90 0.42 -3.55 16 4 N -0.36 -3.80 3.48 -52.79 -0.18 -3.98 16 5 C 0.13 0.85 4.24 -66.36 -0.28 0.56 16 6 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 7 C -0.17 -0.92 6.88 -25.16 -0.17 -1.10 16 8 C 0.04 0.22 7.63 37.93 0.29 0.51 16 9 O -0.36 -2.73 11.64 -35.23 -0.41 -3.14 16 10 C 0.03 0.19 6.58 37.93 0.25 0.44 16 11 C 0.09 1.06 8.71 -16.57 -0.14 0.91 16 12 C -0.28 -4.06 6.10 -105.07 -0.64 -4.70 16 13 C 0.60 10.45 7.85 -12.52 -0.10 10.35 16 14 O -0.55 -11.06 15.17 5.27 0.08 -10.98 16 15 N -0.61 -10.05 3.33 -171.64 -0.57 -10.62 16 16 C 0.10 1.29 4.98 -3.07 -0.02 1.27 16 17 C -0.14 -2.10 6.59 -24.89 -0.16 -2.26 16 18 C 0.17 3.30 3.73 -65.66 -0.24 3.06 16 19 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 20 N -0.71 -17.17 5.24 -51.24 -0.27 -17.44 16 21 C -0.25 -6.74 9.96 -15.06 -0.15 -6.89 16 22 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 24 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 25 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 29 C 0.08 1.61 6.61 -2.40 -0.02 1.60 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 1.34 6.55 -51.93 -0.34 1.00 16 33 H 0.09 0.66 7.97 -51.92 -0.41 0.25 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.10 0.65 7.26 -51.93 -0.38 0.27 16 39 H 0.20 1.92 4.04 -52.48 -0.21 1.71 16 40 H 0.07 0.74 6.85 -51.93 -0.36 0.39 16 41 H 0.06 0.69 7.00 -51.92 -0.36 0.32 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.17 8.01 -51.93 -0.42 0.76 16 44 H 0.39 9.85 7.77 -40.82 -0.32 9.53 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.07 1.51 8.03 -51.93 -0.42 1.09 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -33.95 378.82 -8.23 -42.18 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.98 Total: 7.38 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -1.72 Total: 4.11 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: 0.13 Total: -62.40 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.33 Total: -14.12 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.95 -8.23 -42.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968670025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.589 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds