Wall clock time and date at job start Tue Mar 31 2020 18:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30449 * 125.99307 * 2 1 4 4 N 1.39937 * 108.89821 * 180.22824 * 3 2 1 5 5 C 1.46500 * 125.75124 * 179.77549 * 4 3 2 6 6 H 1.09001 * 110.45794 * 27.57970 * 5 4 3 7 7 C 1.54510 * 110.51154 * 264.97379 * 5 4 3 8 8 C 1.54478 * 104.06437 * 241.35867 * 7 5 4 9 9 O 1.44426 * 104.80029 * 23.97737 * 8 7 5 10 10 C 1.44424 * 105.27714 * 319.48617 * 9 8 7 11 11 C 1.34254 * 108.48972 * 359.75128 * 4 3 2 12 12 C 1.38039 * 107.41991 * 0.02562 * 11 4 3 13 13 C 1.47432 * 126.41638 * 179.97438 * 12 11 4 14 14 O 1.21603 * 120.00137 * 180.02562 * 13 12 11 15 15 N 1.34777 * 119.99549 * 0.29251 * 13 12 11 16 16 C 1.47017 * 125.65341 * 359.75404 * 15 13 12 17 17 C 1.54326 * 107.27641 * 181.01724 * 16 15 13 18 18 C 1.55165 * 102.93791 * 22.19503 * 17 16 15 19 19 H 1.08994 * 111.00234 * 82.60458 * 18 17 16 20 20 N 1.46494 * 110.99958 * 206.42235 * 18 17 16 21 21 C 1.36939 * 119.99793 * 204.99591 * 20 18 17 22 22 H 1.08003 * 119.99982 * 0.02562 * 21 20 18 23 23 C 1.38812 * 120.00120 * 180.02562 * 21 20 18 24 24 N 1.31613 * 120.00095 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00061 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47314 * 59.99982 * 25 23 21 27 27 H 1.48494 * 109.47265 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47126 * 300.00433 * 25 23 21 29 29 C 1.47435 * 125.64473 * 179.44284 * 15 13 12 30 30 H 1.09000 * 109.46725 * 270.18799 * 1 2 3 31 31 H 1.09002 * 109.46827 * 30.17607 * 1 2 3 32 32 H 1.08993 * 109.47121 * 150.18621 * 1 2 3 33 33 H 1.09007 * 110.51021 * 0.02562 * 7 5 4 34 34 H 1.09003 * 110.51019 * 122.71206 * 7 5 4 35 35 H 1.09002 * 110.37188 * 142.80564 * 8 7 5 36 36 H 1.09002 * 110.37011 * 265.03379 * 8 7 5 37 37 H 1.08997 * 110.37467 * 281.68354 * 10 9 8 38 38 H 1.09002 * 110.37306 * 159.34272 * 10 9 8 39 39 H 1.08003 * 126.29082 * 179.97438 * 11 4 3 40 40 H 1.09004 * 109.88390 * 300.44229 * 16 15 13 41 41 H 1.09008 * 109.87982 * 61.59965 * 16 15 13 42 42 H 1.09001 * 110.71545 * 140.55421 * 17 16 15 43 43 H 1.08997 * 110.72078 * 263.65494 * 17 16 15 44 44 H 0.96992 * 120.00403 * 25.00296 * 20 18 17 45 45 H 0.97000 * 120.00586 * 179.97438 * 24 23 21 46 46 H 1.08999 * 110.36625 * 274.74840 * 29 15 13 47 47 H 1.08994 * 110.36368 * 37.06966 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6112 0.6441 -0.0053 5 6 4.7788 1.5289 -0.0116 6 1 4.5378 2.4811 0.4609 7 6 5.2805 1.7528 -1.4557 8 6 6.7181 1.1875 -1.4455 9 8 6.7322 0.2348 -0.3601 10 6 5.9726 0.8548 0.7003 11 6 3.6439 -0.6980 -0.0030 12 6 2.3373 -1.1432 0.0031 13 6 1.8914 -2.5485 0.0069 14 8 0.7038 -2.8097 0.0118 15 7 2.8003 -3.5437 0.0104 16 6 4.2603 -3.3709 0.0058 17 6 4.8885 -4.7804 -0.0138 18 6 3.7485 -5.6610 -0.5903 19 1 3.7285 -5.6108 -1.6789 20 7 3.8737 -7.0472 -0.1334 21 6 3.3347 -8.0640 -0.8756 22 1 2.8176 -7.8440 -1.7979 23 6 3.4528 -9.3776 -0.4424 24 7 4.0824 -9.6457 0.6818 25 14 2.7182 -10.7646 -1.4552 26 1 3.3384 -10.7747 -2.8045 27 1 2.9784 -12.0617 -0.7806 28 1 1.2531 -10.5602 -1.5856 29 6 2.4950 -4.9860 0.0261 30 1 -0.3633 0.0034 1.0277 31 1 -0.3633 0.8884 -0.5166 32 1 -0.3633 -0.8916 -0.5109 33 1 4.6595 1.2055 -2.1650 34 1 5.2899 2.8159 -1.6963 35 1 6.9368 0.6896 -2.3902 36 1 7.4382 1.9850 -1.2622 37 1 6.5782 1.6009 1.2147 38 1 5.6185 0.1014 1.4039 39 1 4.5297 -1.3159 -0.0063 40 1 4.5652 -2.8168 -0.8820 41 1 4.5733 -2.8380 0.9036 42 1 5.7616 -4.8043 -0.6659 43 1 5.1531 -5.0987 0.9945 44 1 4.3382 -7.2449 0.6948 45 1 4.1647 -10.5635 0.9847 46 1 2.3404 -5.3300 1.0487 47 1 1.6149 -5.1940 -0.5822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968670025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:44 Heat of formation + Delta-G solvation = 2.326251 kcal Electronic energy + Delta-G solvation = -29284.065647 eV Core-core repulsion = 25275.431448 eV Total energy + Delta-G solvation = -4008.634198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.74514 -40.79625 -40.06618 -38.52889 -35.98026 -35.07196 -33.52645 -32.43539 -31.57768 -31.07032 -30.37724 -28.93149 -28.07931 -26.14947 -25.06966 -23.91768 -23.05356 -22.06622 -21.62462 -21.19258 -20.28911 -19.35708 -18.22944 -17.74652 -17.38985 -17.21401 -16.83074 -16.48199 -16.38288 -16.03802 -15.70395 -15.48194 -15.31619 -14.97227 -14.72974 -14.31150 -14.16143 -14.01205 -13.80043 -13.71050 -13.64320 -13.18050 -13.03857 -12.95645 -12.84769 -12.66595 -12.57619 -12.42486 -12.35513 -12.12577 -12.10756 -11.92961 -11.74607 -11.59254 -11.01524 -10.91870 -10.88391 -10.38120 -9.88011 -9.55231 -9.05907 -7.96092 -5.25846 0.41443 1.02281 1.20931 1.48657 1.51301 1.56992 2.02123 2.36482 2.56806 2.80110 3.24868 3.35024 3.40243 3.55018 3.61638 3.66878 3.76204 3.88940 3.95654 4.00355 4.17148 4.22739 4.24314 4.29502 4.35136 4.40058 4.48715 4.55427 4.61797 4.63375 4.73102 4.76007 4.84406 4.85969 4.92300 4.94305 4.95936 5.00077 5.21371 5.26309 5.37823 5.46408 5.53463 5.66283 5.83007 6.25670 6.45667 6.61202 7.19889 7.33085 8.04446 8.29002 9.26414 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015292 B = 0.002814 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.627984 B = 9946.383556 C =11310.351368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.119 3.881 3 N -0.314 5.314 4 N -0.346 5.346 5 C 0.114 3.886 6 H 0.139 0.861 7 C -0.162 4.162 8 C 0.043 3.957 9 O -0.387 6.387 10 C 0.035 3.965 11 C 0.112 3.888 12 C -0.308 4.308 13 C 0.598 3.402 14 O -0.587 6.587 15 N -0.611 5.611 16 C 0.101 3.899 17 C -0.128 4.128 18 C 0.166 3.834 19 H 0.066 0.934 20 N -0.722 5.722 21 C -0.249 4.249 22 H 0.074 0.926 23 C -0.068 4.068 24 N -0.965 5.965 25 Si 0.970 3.030 26 H -0.275 1.275 27 H -0.294 1.294 28 H -0.283 1.283 29 C 0.096 3.904 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.215 0.785 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.378 0.622 45 H 0.253 0.747 46 H 0.048 0.952 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.981 29.809 -1.857 30.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.049 4.049 3 N -0.136 5.136 4 N -0.124 5.124 5 C 0.013 3.987 6 H 0.156 0.844 7 C -0.200 4.200 8 C -0.033 4.033 9 O -0.306 6.306 10 C -0.043 4.043 11 C -0.039 4.039 12 C -0.323 4.323 13 C 0.389 3.611 14 O -0.469 6.469 15 N -0.344 5.344 16 C -0.021 4.021 17 C -0.167 4.167 18 C 0.056 3.944 19 H 0.084 0.916 20 N -0.360 5.360 21 C -0.381 4.381 22 H 0.092 0.908 23 C -0.260 4.260 24 N -0.614 5.614 25 Si 0.799 3.201 26 H -0.201 1.201 27 H -0.220 1.220 28 H -0.209 1.209 29 C -0.031 4.031 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.135 0.865 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.135 0.865 38 H 0.118 0.882 39 H 0.231 0.769 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.095 0.905 44 H 0.211 0.789 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.523 30.800 -1.997 31.769 hybrid contribution -0.772 -2.039 -0.022 2.181 sum 6.751 28.761 -2.019 29.612 Atomic orbital electron populations 1.20297 0.85266 1.03801 1.03793 1.22677 0.97913 0.88841 0.95439 1.77092 0.86907 1.22417 1.27153 1.48804 1.05475 1.04623 1.53461 1.23258 0.81885 0.94386 0.99152 0.84364 1.23457 0.97461 1.04780 0.94325 1.23659 0.95200 0.92997 0.91472 1.89216 1.73930 1.41744 1.25689 1.23997 0.90004 0.99365 0.90913 1.24055 0.99104 0.85816 0.94971 1.20130 0.93604 0.93034 1.25552 1.17321 0.84376 0.83920 0.75471 1.90698 1.17638 1.84718 1.53896 1.48322 1.07681 1.05864 1.72536 1.22474 0.78465 0.98337 1.02822 1.22880 0.98288 0.92687 1.02830 1.21509 0.92198 0.83710 0.97025 0.91598 1.42404 1.66229 1.00577 1.26830 1.19585 1.28026 0.87146 1.03331 0.90768 1.25509 1.02069 0.99669 0.98802 1.69783 1.48715 1.19077 1.23871 0.85275 0.78162 0.78547 0.78155 1.20095 1.22034 1.20906 1.23010 1.00737 0.79234 1.00079 0.89799 0.89372 0.90566 0.91472 0.86487 0.88043 0.89082 0.86468 0.88150 0.76881 0.89053 0.89131 0.87944 0.90453 0.78871 0.93861 0.93394 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.81 9.92 71.24 0.71 -1.10 16 2 C 0.12 3.25 7.26 43.51 0.32 3.57 16 3 N -0.31 -7.65 12.50 -46.67 -0.58 -8.23 16 4 N -0.35 -6.45 3.48 -320.94 -1.12 -7.57 16 5 C 0.11 1.13 4.24 46.01 0.19 1.33 16 6 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 7 C -0.16 -1.25 6.88 31.61 0.22 -1.03 16 8 C 0.04 0.28 7.63 72.48 0.55 0.84 16 9 O -0.39 -4.39 11.64 -148.98 -1.73 -6.12 16 10 C 0.03 0.27 6.58 72.48 0.48 0.74 16 11 C 0.11 2.34 8.71 84.28 0.73 3.08 16 12 C -0.31 -8.76 6.10 -20.15 -0.12 -8.88 16 13 C 0.60 20.99 7.85 86.66 0.68 21.67 16 14 O -0.59 -24.89 15.17 -4.04 -0.06 -24.95 16 15 N -0.61 -19.93 3.33 -815.19 -2.71 -22.64 16 16 C 0.10 2.36 4.98 86.73 0.43 2.79 16 17 C -0.13 -3.55 6.59 31.79 0.21 -3.34 16 18 C 0.17 6.37 3.73 46.46 0.17 6.55 16 19 H 0.07 2.56 8.09 -2.39 -0.02 2.54 16 20 N -0.72 -35.34 5.24 -316.01 -1.66 -36.99 16 21 C -0.25 -13.69 9.96 84.03 0.84 -12.86 16 22 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 23 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 24 N -0.96 -58.07 13.06 21.65 0.28 -57.79 16 25 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 28 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 29 C 0.10 3.76 6.61 86.93 0.57 4.34 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 2.21 6.55 -2.39 -0.02 2.20 16 33 H 0.07 0.85 7.97 -2.38 -0.02 0.83 16 34 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.10 0.87 7.26 -2.39 -0.02 0.86 16 39 H 0.22 3.47 4.04 -2.91 -0.01 3.45 16 40 H 0.09 1.73 6.85 -2.39 -0.02 1.71 16 41 H 0.09 1.68 7.00 -2.38 -0.02 1.66 16 42 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.08 2.19 8.01 -2.39 -0.02 2.17 16 44 H 0.38 19.62 7.77 -92.71 -0.72 18.90 16 45 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 46 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.05 2.01 8.03 -2.39 -0.02 1.99 16 Total: -1.00 -75.94 378.82 1.17 -74.77 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.28 Total: 27.12 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 6.45 Total: 14.31 kcal Atomic # 7 Polarization: -127.44 SS G_CDS: -5.79 Total: -133.22 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -1.80 Total: -31.07 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -75.94 1.17 -74.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968670025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.093 kcal (2) G-P(sol) polarization free energy of solvation -75.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds