Wall clock time and date at job start Tue Mar 31 2020 19:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 110.91390 * 2 1 4 4 C 1.54910 * 111.00645 * 236.09865 * 2 1 3 5 5 N 1.47424 * 104.83476 * 204.91666 * 4 2 1 6 6 C 1.36928 * 125.64989 * 204.16596 * 5 4 2 7 7 H 1.08003 * 120.00084 * 359.97438 * 6 5 4 8 8 C 1.38815 * 119.99961 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00265 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99937 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47187 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46932 * 120.00389 * 10 8 6 13 13 H 1.48499 * 109.47326 * 240.00084 * 10 8 6 14 14 C 1.47029 * 108.70074 * 24.12650 * 5 4 2 15 15 C 1.54326 * 107.27130 * 358.94234 * 14 5 4 16 16 H 1.09000 * 110.72117 * 219.26676 * 15 14 5 17 17 N 1.46499 * 110.71929 * 96.16973 * 15 14 5 18 18 C 1.34778 * 120.00015 * 86.45580 * 17 15 14 19 19 O 1.21683 * 119.99714 * 5.15731 * 18 17 15 20 20 C 1.46766 * 120.00037 * 185.16182 * 18 17 15 21 21 C 1.36937 * 126.93949 * 185.90062 * 20 18 17 22 22 N 1.33562 * 107.86860 * 179.97438 * 21 20 18 23 23 C 1.30250 * 109.64841 * 0.02562 * 22 21 20 24 24 N 1.35179 * 108.97167 * 0.02562 * 23 22 21 25 25 C 1.46504 * 123.69755 * 179.91049 * 24 23 22 26 26 C 1.53469 * 108.12709 * 343.73605 * 25 24 23 27 27 O 1.43043 * 109.61326 * 48.15214 * 26 25 24 28 28 C 1.43433 * 114.06062 * 290.04684 * 27 26 25 29 29 H 1.08997 * 109.47067 * 296.09718 * 1 2 3 30 30 H 1.09000 * 109.47135 * 56.10236 * 1 2 3 31 31 H 1.09006 * 109.46799 * 176.09475 * 1 2 3 32 32 H 1.09005 * 109.46848 * 183.90252 * 3 2 1 33 33 H 1.09001 * 109.46840 * 303.89836 * 3 2 1 34 34 H 1.09001 * 109.47087 * 63.89881 * 3 2 1 35 35 H 1.09000 * 110.36630 * 86.07732 * 4 2 1 36 36 H 1.09001 * 110.36594 * 323.75587 * 4 2 1 37 37 H 0.96993 * 120.00101 * 180.02562 * 9 8 6 38 38 H 1.09001 * 109.88332 * 239.52645 * 14 5 4 39 39 H 1.08997 * 109.88062 * 118.35996 * 14 5 4 40 40 H 0.96995 * 120.00141 * 266.44989 * 17 15 14 41 41 H 1.08007 * 126.06520 * 359.96237 * 21 20 18 42 42 H 1.08995 * 109.73701 * 224.07316 * 25 24 23 43 43 H 1.08999 * 109.73037 * 103.38765 * 25 24 23 44 44 H 1.09001 * 109.45098 * 168.19828 * 26 25 24 45 45 H 1.08998 * 109.44804 * 288.13911 * 26 25 24 46 46 H 1.08997 * 109.78950 * 169.21125 * 28 27 26 47 47 H 1.09000 * 109.78911 * 289.99916 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4272 -1.2431 -0.7733 6 6 4.4645 -1.5653 -1.6071 7 1 4.3339 -1.5099 -2.6778 8 6 5.6838 -1.9632 -1.0762 9 7 5.8428 -2.0312 0.2286 10 14 7.0986 -2.4035 -2.2137 11 1 6.6659 -2.2467 -3.6256 12 1 8.2480 -1.5022 -1.9457 13 1 7.5069 -3.8110 -1.9740 14 6 3.4675 -1.2741 0.6961 15 6 2.0861 -0.8079 1.2022 16 1 2.1919 -0.1724 2.0815 17 7 1.2268 -1.9574 1.4962 18 6 1.2806 -2.5468 2.7071 19 8 1.9725 -2.0684 3.5863 20 6 0.5049 -3.7657 2.9650 21 6 0.3653 -4.4143 4.1629 22 7 -0.4201 -5.4763 3.9650 23 6 -0.7785 -5.5287 2.7138 24 7 -0.2263 -4.4859 2.0544 25 6 -0.4185 -4.2351 0.6238 26 6 -0.9624 -5.5191 -0.0172 27 8 -2.0511 -6.0214 0.7630 28 6 -1.6614 -6.5518 2.0374 29 1 -0.3633 0.4521 0.9229 30 1 -0.3633 0.5731 -0.8530 31 1 -0.3633 -1.0254 -0.0700 32 1 3.1636 1.4026 -0.0699 33 1 1.6704 1.9732 -0.8530 34 1 1.7835 1.9300 0.9229 35 1 2.1560 -0.1720 -2.0837 36 1 1.4519 -1.6704 -1.4025 37 1 6.6949 -2.3089 0.5995 38 1 4.2426 -0.5997 1.0600 39 1 3.6650 -2.2893 1.0401 40 1 0.6191 -2.2943 0.8194 41 1 0.8115 -4.1196 5.1013 42 1 0.5341 -3.9699 0.1654 43 1 -1.1329 -3.4236 0.4853 44 1 -1.3097 -5.3016 -1.0272 45 1 -0.1709 -6.2673 -0.0589 46 1 -2.5463 -6.7360 2.6466 47 1 -1.1098 -7.4814 1.8972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974694046.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:54 Heat of formation + Delta-G solvation = 20.069117 kcal Electronic energy + Delta-G solvation = -30665.747134 eV Core-core repulsion = 26657.882324 eV Total energy + Delta-G solvation = -4007.864810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.65398 -39.74853 -38.66934 -37.79517 -34.80390 -33.83474 -32.96201 -30.90374 -30.77177 -30.17659 -28.29961 -27.01231 -26.24533 -25.72670 -24.35037 -23.80792 -22.30938 -20.72021 -20.17710 -19.87345 -18.84673 -17.96352 -17.18295 -16.79204 -16.36507 -15.94464 -15.75239 -15.54359 -15.28088 -14.77132 -14.35574 -14.24232 -14.05468 -13.93483 -13.77245 -13.48249 -13.32908 -13.01157 -12.62885 -12.26125 -12.12921 -12.08114 -11.77673 -11.66356 -11.49448 -11.18844 -11.08181 -10.85940 -10.66982 -10.51264 -10.34731 -10.32713 -10.09273 -9.95834 -9.86611 -9.79182 -9.72621 -8.76267 -8.68478 -8.43824 -6.91895 -5.76446 -3.12207 1.26656 2.22439 2.71059 3.20230 3.32577 3.35180 3.40112 3.43397 3.51218 3.78266 4.02174 4.42100 4.43498 4.52593 4.65848 4.81961 4.88350 5.02827 5.11087 5.13902 5.15637 5.17882 5.22606 5.45484 5.48121 5.54289 5.68050 5.80519 5.84715 5.90158 6.06597 6.07514 6.13428 6.26637 6.30150 6.45445 6.47973 6.51584 6.56126 6.59346 6.78359 6.83351 7.45569 7.53619 7.64663 7.76592 7.83242 8.17327 8.39442 9.14137 9.74873 10.39523 11.34177 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011585 B = 0.004018 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.414104 B = 6967.069072 C = 7483.619654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.126 4.126 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.233 4.233 7 H 0.078 0.922 8 C -0.005 4.005 9 N -0.917 5.917 10 Si 0.910 3.090 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.291 1.291 14 C 0.175 3.825 15 C 0.122 3.878 16 H 0.092 0.908 17 N -0.712 5.712 18 C 0.592 3.408 19 O -0.521 6.521 20 C -0.064 4.064 21 C 0.057 3.943 22 N -0.480 5.480 23 C 0.182 3.818 24 N -0.437 5.437 25 C 0.054 3.946 26 C 0.050 3.950 27 O -0.370 6.370 28 C 0.149 3.851 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.043 0.957 36 H 0.010 0.990 37 H 0.253 0.747 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.389 0.611 41 H 0.187 0.813 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.126 0.874 45 H 0.072 0.928 46 H 0.129 0.871 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.122 -3.642 -0.136 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.183 4.183 4 C 0.018 3.982 5 N -0.328 5.328 6 C -0.361 4.361 7 H 0.096 0.904 8 C -0.202 4.202 9 N -0.564 5.564 10 Si 0.741 3.259 11 H -0.205 1.205 12 H -0.217 1.217 13 H -0.218 1.218 14 C 0.050 3.950 15 C 0.017 3.983 16 H 0.110 0.890 17 N -0.365 5.365 18 C 0.378 3.622 19 O -0.397 6.397 20 C -0.180 4.180 21 C -0.096 4.096 22 N -0.199 5.199 23 C -0.080 4.080 24 N -0.122 5.122 25 C -0.069 4.069 26 C -0.027 4.027 27 O -0.287 6.287 28 C 0.071 3.929 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.028 0.972 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.226 0.774 41 H 0.204 0.796 42 H 0.130 0.870 43 H 0.118 0.882 44 H 0.144 0.856 45 H 0.091 0.909 46 H 0.147 0.853 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.782 -3.842 0.830 17.236 hybrid contribution 1.207 0.200 -1.410 1.867 sum -15.575 -3.642 -0.580 16.005 Atomic orbital electron populations 1.21688 0.94855 1.00599 1.01738 1.22031 0.94321 0.96326 0.96459 1.21596 1.02606 0.93439 1.00683 1.21616 0.87802 0.94357 0.94434 1.44446 1.07596 1.79019 1.01768 1.19054 0.89374 1.38797 0.88899 0.90374 1.24820 0.97839 1.01593 0.95947 1.69961 1.24227 1.53020 1.09183 0.86079 0.82543 0.77771 0.79535 1.20527 1.21667 1.21809 1.21543 0.89549 1.00533 0.83413 1.22581 0.92303 0.86012 0.97361 0.89024 1.46204 1.42795 1.33550 1.13923 1.16745 0.80791 0.81777 0.82922 1.90851 1.40673 1.63639 1.44502 1.21260 1.05649 0.99652 0.91432 1.22709 0.98253 0.91421 0.97242 1.69824 1.15310 1.20900 1.13899 1.24094 1.01490 0.93095 0.89339 1.45236 1.36489 1.21475 1.09038 1.23016 1.04252 1.01512 0.78116 1.23016 0.90704 0.93189 0.95829 1.88161 1.32121 1.79891 1.28544 1.21314 0.97659 0.91337 0.82637 0.92619 0.92288 0.93789 0.91056 0.92758 0.93190 0.93855 0.97208 0.93611 0.92522 0.93440 0.77393 0.79587 0.87033 0.88202 0.85605 0.90943 0.85311 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 8.22 37.16 0.31 -1.28 16 2 C -0.09 -1.41 0.83 -152.36 -0.13 -1.54 16 3 C -0.13 -1.91 8.57 37.16 0.32 -1.59 16 4 C 0.14 2.67 6.14 -2.53 -0.02 2.66 16 5 N -0.60 -14.35 3.38 -170.07 -0.57 -14.92 16 6 C -0.23 -6.21 10.28 -15.06 -0.15 -6.36 16 7 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 8 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 9 N -0.92 -26.85 10.31 55.49 0.57 -26.28 16 10 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 14 C 0.18 4.17 4.79 -3.06 -0.01 4.16 16 15 C 0.12 2.26 2.55 -66.09 -0.17 2.09 16 16 H 0.09 1.77 7.53 -51.93 -0.39 1.38 16 17 N -0.71 -11.82 4.44 -53.31 -0.24 -12.06 16 18 C 0.59 10.79 7.78 -12.81 -0.10 10.69 16 19 O -0.52 -11.19 16.61 5.20 0.09 -11.10 16 20 C -0.06 -1.03 6.95 -82.49 -0.57 -1.60 16 21 C 0.06 0.89 11.68 -17.27 -0.20 0.69 16 22 N -0.48 -7.13 11.19 -10.29 -0.12 -7.24 16 23 C 0.18 2.34 7.78 -155.30 -1.21 1.13 16 24 N -0.44 -5.81 3.16 -109.67 -0.35 -6.15 16 25 C 0.05 0.54 5.51 -3.80 -0.02 0.52 16 26 C 0.05 0.39 6.83 37.40 0.26 0.65 16 27 O -0.37 -3.34 10.78 -35.23 -0.38 -3.72 16 28 C 0.15 1.31 7.29 36.21 0.26 1.57 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.48 6.38 -51.93 -0.33 0.15 16 32 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.04 0.79 8.05 -51.93 -0.42 0.38 16 36 H 0.01 0.18 7.98 -51.93 -0.41 -0.23 16 37 H 0.25 7.28 8.31 -40.82 -0.34 6.95 16 38 H 0.06 1.54 7.38 -51.93 -0.38 1.15 16 39 H 0.05 1.31 7.41 -51.93 -0.38 0.93 16 40 H 0.39 5.50 3.31 -40.82 -0.14 5.36 16 41 H 0.19 2.65 8.06 -52.48 -0.42 2.23 16 42 H 0.11 1.24 6.95 -51.93 -0.36 0.88 16 43 H 0.10 0.85 7.95 -51.93 -0.41 0.43 16 44 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 46 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -33.84 371.60 -8.95 -42.78 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.99 Total: 4.84 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: -1.54 Total: 11.54 kcal Atomic # 7 Polarization: -65.95 SS G_CDS: -0.70 Total: -66.65 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.29 Total: -14.82 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.84 -8.95 -42.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974694046.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.851 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds