Wall clock time and date at job start Tue Mar 31 2020 19:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 110.91390 * 2 1 4 4 C 1.54910 * 111.00645 * 236.09865 * 2 1 3 5 5 N 1.47424 * 104.83476 * 204.91666 * 4 2 1 6 6 C 1.36928 * 125.64989 * 204.16596 * 5 4 2 7 7 H 1.08003 * 120.00084 * 359.97438 * 6 5 4 8 8 C 1.38815 * 119.99961 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00265 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99937 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47187 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46932 * 120.00389 * 10 8 6 13 13 H 1.48499 * 109.47326 * 240.00084 * 10 8 6 14 14 C 1.47029 * 108.70074 * 24.12650 * 5 4 2 15 15 C 1.54326 * 107.27130 * 358.94234 * 14 5 4 16 16 H 1.09000 * 110.72117 * 219.26676 * 15 14 5 17 17 N 1.46499 * 110.71929 * 96.16973 * 15 14 5 18 18 C 1.34778 * 120.00015 * 86.45580 * 17 15 14 19 19 O 1.21683 * 119.99714 * 5.15731 * 18 17 15 20 20 C 1.46766 * 120.00037 * 185.16182 * 18 17 15 21 21 C 1.36937 * 126.93949 * 185.90062 * 20 18 17 22 22 N 1.33562 * 107.86860 * 179.97438 * 21 20 18 23 23 C 1.30250 * 109.64841 * 0.02562 * 22 21 20 24 24 N 1.35179 * 108.97167 * 0.02562 * 23 22 21 25 25 C 1.46504 * 123.69755 * 179.91049 * 24 23 22 26 26 C 1.53469 * 108.12709 * 343.73605 * 25 24 23 27 27 O 1.43043 * 109.61326 * 48.15214 * 26 25 24 28 28 C 1.43433 * 114.06062 * 290.04684 * 27 26 25 29 29 H 1.08997 * 109.47067 * 296.09718 * 1 2 3 30 30 H 1.09000 * 109.47135 * 56.10236 * 1 2 3 31 31 H 1.09006 * 109.46799 * 176.09475 * 1 2 3 32 32 H 1.09005 * 109.46848 * 183.90252 * 3 2 1 33 33 H 1.09001 * 109.46840 * 303.89836 * 3 2 1 34 34 H 1.09001 * 109.47087 * 63.89881 * 3 2 1 35 35 H 1.09000 * 110.36630 * 86.07732 * 4 2 1 36 36 H 1.09001 * 110.36594 * 323.75587 * 4 2 1 37 37 H 0.96993 * 120.00101 * 180.02562 * 9 8 6 38 38 H 1.09001 * 109.88332 * 239.52645 * 14 5 4 39 39 H 1.08997 * 109.88062 * 118.35996 * 14 5 4 40 40 H 0.96995 * 120.00141 * 266.44989 * 17 15 14 41 41 H 1.08007 * 126.06520 * 359.96237 * 21 20 18 42 42 H 1.08995 * 109.73701 * 224.07316 * 25 24 23 43 43 H 1.08999 * 109.73037 * 103.38765 * 25 24 23 44 44 H 1.09001 * 109.45098 * 168.19828 * 26 25 24 45 45 H 1.08998 * 109.44804 * 288.13911 * 26 25 24 46 46 H 1.08997 * 109.78950 * 169.21125 * 28 27 26 47 47 H 1.09000 * 109.78911 * 289.99916 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4272 -1.2431 -0.7733 6 6 4.4645 -1.5653 -1.6071 7 1 4.3339 -1.5099 -2.6778 8 6 5.6838 -1.9632 -1.0762 9 7 5.8428 -2.0312 0.2286 10 14 7.0986 -2.4035 -2.2137 11 1 6.6659 -2.2467 -3.6256 12 1 8.2480 -1.5022 -1.9457 13 1 7.5069 -3.8110 -1.9740 14 6 3.4675 -1.2741 0.6961 15 6 2.0861 -0.8079 1.2022 16 1 2.1919 -0.1724 2.0815 17 7 1.2268 -1.9574 1.4962 18 6 1.2806 -2.5468 2.7071 19 8 1.9725 -2.0684 3.5863 20 6 0.5049 -3.7657 2.9650 21 6 0.3653 -4.4143 4.1629 22 7 -0.4201 -5.4763 3.9650 23 6 -0.7785 -5.5287 2.7138 24 7 -0.2263 -4.4859 2.0544 25 6 -0.4185 -4.2351 0.6238 26 6 -0.9624 -5.5191 -0.0172 27 8 -2.0511 -6.0214 0.7630 28 6 -1.6614 -6.5518 2.0374 29 1 -0.3633 0.4521 0.9229 30 1 -0.3633 0.5731 -0.8530 31 1 -0.3633 -1.0254 -0.0700 32 1 3.1636 1.4026 -0.0699 33 1 1.6704 1.9732 -0.8530 34 1 1.7835 1.9300 0.9229 35 1 2.1560 -0.1720 -2.0837 36 1 1.4519 -1.6704 -1.4025 37 1 6.6949 -2.3089 0.5995 38 1 4.2426 -0.5997 1.0600 39 1 3.6650 -2.2893 1.0401 40 1 0.6191 -2.2943 0.8194 41 1 0.8115 -4.1196 5.1013 42 1 0.5341 -3.9699 0.1654 43 1 -1.1329 -3.4236 0.4853 44 1 -1.3097 -5.3016 -1.0272 45 1 -0.1709 -6.2673 -0.0589 46 1 -2.5463 -6.7360 2.6466 47 1 -1.1098 -7.4814 1.8972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974694046.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:53 Heat of formation + Delta-G solvation = -3.774846 kcal Electronic energy + Delta-G solvation = -30666.781085 eV Core-core repulsion = 26657.882324 eV Total energy + Delta-G solvation = -4008.898762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.71836 -41.22862 -39.59974 -39.14321 -36.04264 -35.43483 -34.34949 -32.65114 -31.91061 -31.06520 -29.89578 -28.16441 -27.53568 -27.17710 -25.48169 -25.08859 -23.69608 -22.13664 -21.75142 -20.93917 -20.16590 -19.02657 -18.72419 -18.09771 -17.52547 -17.31984 -16.81403 -16.58034 -16.36358 -16.25438 -15.71219 -15.59856 -15.50952 -15.29205 -14.98936 -14.82967 -14.44513 -14.05153 -13.84725 -13.84188 -13.49512 -13.20678 -13.02141 -12.92406 -12.90274 -12.75612 -12.64034 -12.34441 -12.10062 -11.92530 -11.82739 -11.71807 -11.58780 -11.38607 -11.26389 -11.15974 -10.85003 -10.78490 -10.24555 -9.64262 -8.92871 -7.86331 -5.23157 0.07207 1.24791 1.42945 1.43824 1.54146 1.57623 1.93815 2.15363 2.46804 2.57890 2.93533 3.20504 3.33027 3.39132 3.44906 3.66513 3.78314 3.82258 3.89755 4.00753 4.04007 4.25181 4.28591 4.32638 4.44043 4.45492 4.54041 4.62769 4.66057 4.78778 4.79876 4.82982 4.88808 4.97320 5.04448 5.11626 5.19937 5.27949 5.30579 5.44193 5.50563 5.61994 5.66733 5.68704 5.84482 6.14131 6.29697 6.68668 6.97660 7.05777 7.74856 8.38822 9.23316 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011585 B = 0.004018 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.414104 B = 6967.069072 C = 7483.619654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.075 4.075 3 C -0.124 4.124 4 C 0.138 3.862 5 N -0.618 5.618 6 C -0.233 4.233 7 H 0.091 0.909 8 C -0.069 4.069 9 N -0.955 5.955 10 Si 0.975 3.025 11 H -0.258 1.258 12 H -0.297 1.297 13 H -0.298 1.298 14 C 0.194 3.806 15 C 0.133 3.867 16 H 0.080 0.920 17 N -0.697 5.697 18 C 0.591 3.409 19 O -0.565 6.565 20 C -0.090 4.090 21 C 0.051 3.949 22 N -0.501 5.501 23 C 0.194 3.806 24 N -0.438 5.438 25 C 0.044 3.956 26 C 0.052 3.948 27 O -0.371 6.371 28 C 0.149 3.851 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.031 0.969 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.033 0.967 37 H 0.243 0.757 38 H 0.008 0.992 39 H -0.002 1.002 40 H 0.404 0.596 41 H 0.188 0.812 42 H 0.099 0.901 43 H 0.122 0.878 44 H 0.159 0.841 45 H 0.073 0.927 46 H 0.151 0.849 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.544 -4.106 -2.773 21.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.076 4.076 3 C -0.181 4.181 4 C 0.014 3.986 5 N -0.344 5.344 6 C -0.362 4.362 7 H 0.109 0.891 8 C -0.262 4.262 9 N -0.605 5.605 10 Si 0.804 3.196 11 H -0.182 1.182 12 H -0.224 1.224 13 H -0.225 1.225 14 C 0.068 3.932 15 C 0.027 3.973 16 H 0.098 0.902 17 N -0.351 5.351 18 C 0.378 3.622 19 O -0.444 6.444 20 C -0.206 4.206 21 C -0.103 4.103 22 N -0.221 5.221 23 C -0.069 4.069 24 N -0.122 5.122 25 C -0.078 4.078 26 C -0.025 4.025 27 O -0.288 6.288 28 C 0.071 3.929 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.026 0.974 39 H 0.016 0.984 40 H 0.244 0.756 41 H 0.205 0.795 42 H 0.117 0.883 43 H 0.139 0.861 44 H 0.177 0.823 45 H 0.092 0.908 46 H 0.168 0.832 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.276 -4.299 -1.889 20.813 hybrid contribution 2.222 0.306 -0.620 2.327 sum -18.054 -3.994 -2.509 18.660 Atomic orbital electron populations 1.21678 0.90938 1.02219 1.03458 1.22018 0.97195 0.95528 0.92893 1.21597 1.00130 0.93618 1.02803 1.21911 0.85409 0.95519 0.95796 1.44667 1.09352 1.78914 1.01494 1.19519 0.90030 1.36780 0.89844 0.89132 1.25657 1.00634 1.02736 0.97133 1.70230 1.24041 1.55002 1.11188 0.85056 0.79196 0.76576 0.78811 1.18198 1.22421 1.22535 1.21063 0.91628 0.96568 0.83951 1.22233 0.90272 0.86668 0.98102 0.90159 1.45979 1.42295 1.32876 1.13934 1.17078 0.80271 0.82161 0.82714 1.90818 1.42644 1.65043 1.45917 1.20884 1.07404 0.99764 0.92562 1.22891 0.98204 0.91721 0.97478 1.69843 1.16031 1.20841 1.15360 1.25017 1.00172 0.92825 0.88871 1.45411 1.35720 1.21030 1.10025 1.23357 1.04301 1.03878 0.76225 1.23201 0.90637 0.91873 0.96751 1.88175 1.32490 1.79813 1.28323 1.21680 0.98043 0.90560 0.82631 0.91836 0.89539 0.92418 0.94980 0.89936 0.91666 0.92807 0.94910 0.94803 0.97372 0.98384 0.75636 0.79516 0.88316 0.86059 0.82330 0.90845 0.83161 0.87265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.22 71.98 0.59 -1.92 16 2 C -0.07 -2.22 0.83 -50.79 -0.04 -2.26 16 3 C -0.12 -3.58 8.57 71.98 0.62 -2.96 16 4 C 0.14 4.85 6.14 86.86 0.53 5.39 16 5 N -0.62 -29.95 3.38 -691.97 -2.34 -32.28 16 6 C -0.23 -12.52 10.28 84.04 0.86 -11.65 16 7 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 8 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 9 N -0.96 -59.36 10.31 21.65 0.22 -59.13 16 10 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 11 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 12 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 13 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 14 C 0.19 9.84 4.79 86.73 0.42 10.25 16 15 C 0.13 5.04 2.55 46.18 0.12 5.16 16 16 H 0.08 3.26 7.53 -2.39 -0.02 3.24 16 17 N -0.70 -23.23 4.44 -440.78 -1.96 -25.19 16 18 C 0.59 22.32 7.78 86.47 0.67 22.99 16 19 O -0.57 -25.86 16.61 -4.29 -0.07 -25.93 16 20 C -0.09 -2.93 6.95 40.23 0.28 -2.65 16 21 C 0.05 1.63 11.68 84.12 0.98 2.61 16 22 N -0.50 -14.57 11.19 -186.48 -2.09 -16.66 16 23 C 0.19 4.64 7.78 138.29 1.08 5.72 16 24 N -0.44 -11.05 3.16 -500.87 -1.58 -12.63 16 25 C 0.04 0.76 5.51 86.54 0.48 1.24 16 26 C 0.05 0.63 6.83 72.14 0.49 1.12 16 27 O -0.37 -5.24 10.78 -148.98 -1.61 -6.84 16 28 C 0.15 2.13 7.29 71.37 0.52 2.65 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.00 6.38 -2.38 -0.02 0.99 16 32 H 0.03 1.16 7.91 -2.38 -0.02 1.15 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.05 1.81 8.05 -2.39 -0.02 1.79 16 36 H 0.03 1.04 7.98 -2.39 -0.02 1.02 16 37 H 0.24 14.90 8.31 -92.71 -0.77 14.12 16 38 H 0.01 0.48 7.38 -2.39 -0.02 0.46 16 39 H 0.00 -0.12 7.41 -2.39 -0.02 -0.14 16 40 H 0.40 10.79 3.31 -92.71 -0.31 10.49 16 41 H 0.19 5.66 8.06 -2.91 -0.02 5.64 16 42 H 0.10 2.01 6.95 -2.39 -0.02 1.99 16 43 H 0.12 1.60 7.95 -2.39 -0.02 1.58 16 44 H 0.16 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.07 0.89 8.10 -2.39 -0.02 0.88 16 46 H 0.15 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -79.89 371.60 1.35 -78.55 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.68 Total: 20.16 kcal Atomic # 6 Polarization: 24.17 SS G_CDS: 8.06 Total: 32.23 kcal Atomic # 7 Polarization: -138.15 SS G_CDS: -7.75 Total: -145.90 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.68 Total: -32.78 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -79.89 1.35 -78.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974694046.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.771 kcal (2) G-P(sol) polarization free energy of solvation -79.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds