Wall clock time and date at job start Tue Mar 31 2020 19:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34269 * 125.38762 * 2 1 4 4 C 1.38204 * 108.39661 * 179.83619 * 3 2 1 5 5 C 1.47391 * 126.46421 * 180.16558 * 4 3 2 6 6 N 1.34776 * 120.00152 * 0.30338 * 5 4 3 7 7 O 1.21612 * 120.00064 * 180.30464 * 5 4 3 8 8 C 1.41307 * 107.07590 * 0.42372 * 4 3 2 9 9 C 1.36356 * 107.01044 * 359.74430 * 8 4 3 10 10 C 1.46800 * 125.85305 * 179.97438 * 9 8 4 11 11 O 1.21678 * 120.00280 * 185.00079 * 10 9 8 12 12 N 1.34777 * 120.00084 * 4.98942 * 10 9 8 13 13 C 1.46502 * 120.00542 * 185.10061 * 12 10 9 14 14 H 1.09003 * 110.88271 * 325.70908 * 13 12 10 15 15 C 1.54911 * 111.00072 * 89.58213 * 13 12 10 16 16 N 1.47531 * 104.77882 * 81.09596 * 15 13 12 17 17 C 1.36936 * 125.63205 * 204.08510 * 16 15 13 18 18 H 1.08001 * 120.00274 * 180.02562 * 17 16 15 19 19 C 1.38817 * 120.00104 * 0.03488 * 17 16 15 20 20 N 1.31615 * 119.99925 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99835 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47280 * 60.00468 * 21 19 17 23 23 H 1.48503 * 109.47210 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47484 * 300.00056 * 21 19 17 25 25 C 1.47016 * 108.71776 * 24.11402 * 16 15 13 26 26 C 1.54327 * 107.27267 * 358.94572 * 25 16 15 27 27 C 1.52996 * 110.71897 * 219.44107 * 26 25 16 28 28 C 1.53001 * 110.72020 * 96.16933 * 26 25 16 29 29 H 1.09004 * 109.47109 * 264.10615 * 1 2 3 30 30 H 1.08995 * 109.47770 * 24.11225 * 1 2 3 31 31 H 1.09006 * 109.46859 * 144.11024 * 1 2 3 32 32 H 1.08002 * 125.80243 * 359.97438 * 3 2 1 33 33 H 0.97000 * 119.99784 * 359.97438 * 6 5 4 34 34 H 0.96997 * 120.00431 * 179.97438 * 6 5 4 35 35 H 1.07995 * 126.49638 * 179.74218 * 8 4 3 36 36 H 0.96998 * 119.99828 * 5.10652 * 12 10 9 37 37 H 1.08997 * 110.36577 * 199.90250 * 15 13 12 38 38 H 1.08992 * 110.37234 * 322.23014 * 15 13 12 39 39 H 0.97005 * 119.99856 * 179.97438 * 20 19 17 40 40 H 1.09005 * 109.88411 * 239.52420 * 25 16 15 41 41 H 1.09003 * 110.00703 * 118.43457 * 25 16 15 42 42 H 1.09002 * 109.46786 * 173.52140 * 27 26 25 43 43 H 1.09002 * 109.47545 * 293.52363 * 27 26 25 44 44 H 1.09000 * 109.47338 * 53.52505 * 27 26 25 45 45 H 1.08998 * 109.46841 * 306.47952 * 28 26 25 46 46 H 1.09001 * 109.46985 * 66.47616 * 28 26 25 47 47 H 1.08999 * 109.47211 * 186.47752 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2426 1.0946 0.0000 4 6 3.5643 0.6908 0.0037 5 6 4.7484 1.5684 0.0085 6 7 4.5948 2.9074 0.0157 7 8 5.8640 1.0844 0.0059 8 6 3.5664 -0.7223 -0.0039 9 6 2.2631 -1.1231 -0.0061 10 6 1.7911 -2.5131 -0.0142 11 8 0.6014 -2.7512 -0.1073 12 7 2.6754 -3.5257 0.0813 13 6 2.2175 -4.9121 -0.0388 14 1 1.2213 -5.0307 0.3876 15 6 2.2490 -5.3812 -1.5149 16 7 3.6560 -5.7492 -1.7629 17 6 4.2702 -5.7742 -2.9865 18 1 5.3091 -6.0592 -3.0635 19 6 3.5577 -5.4331 -4.1280 20 7 2.2918 -5.0851 -4.0341 21 14 4.3955 -5.4680 -5.7972 22 1 4.8847 -6.8420 -6.0769 23 1 3.4253 -5.0643 -6.8465 24 1 5.5426 -4.5250 -5.7952 25 6 4.2891 -6.0850 -0.4793 26 6 3.2251 -5.8899 0.6214 27 6 3.8475 -5.2638 1.8710 28 6 2.5469 -7.2188 0.9604 29 1 -0.3633 -0.1055 1.0223 30 1 -0.3634 0.9379 -0.4198 31 1 -0.3633 -0.8326 -0.6025 32 1 1.8943 2.1170 -0.0004 33 1 3.7049 3.2934 0.0173 34 1 5.3740 3.4850 0.0191 35 1 4.4355 -1.3633 -0.0074 36 1 3.6151 -3.3365 0.2298 37 1 1.6008 -6.2468 -1.6517 38 1 1.9456 -4.5705 -2.1772 39 1 1.7940 -4.8464 -4.8317 40 1 5.1353 -5.4221 -0.2986 41 1 4.6260 -7.1216 -0.4896 42 1 3.0620 -5.0294 2.5895 43 1 4.5507 -5.9666 2.3178 44 1 4.3730 -4.3493 1.5959 45 1 2.1618 -7.6734 0.0477 46 1 3.2718 -7.8892 1.4223 47 1 1.7242 -7.0407 1.6528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974764746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:25 Heat of formation + Delta-G solvation = 1.421299 kcal Electronic energy + Delta-G solvation = -29938.926117 eV Core-core repulsion = 25930.252677 eV Total energy + Delta-G solvation = -4008.673440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.63070 -39.50251 -38.82955 -37.59114 -33.93316 -33.73771 -33.38669 -32.48552 -30.67078 -29.72734 -27.91701 -26.94474 -26.70067 -25.57031 -23.74332 -23.08809 -22.08173 -20.28619 -19.71599 -19.47755 -18.74444 -17.98149 -17.03085 -16.67771 -15.98093 -15.84609 -15.63811 -15.60658 -14.60721 -14.46684 -14.31633 -13.92845 -13.83471 -13.70297 -13.60342 -13.34383 -13.14231 -12.72104 -12.53471 -12.30412 -12.23846 -12.12664 -11.88785 -11.71531 -11.26875 -11.13755 -10.97737 -10.72818 -10.39169 -10.20548 -10.10091 -9.93118 -9.79339 -9.75114 -9.65542 -9.57505 -8.87076 -8.65857 -8.51436 -8.21489 -6.77662 -5.59782 -3.02006 1.50362 1.85937 2.56634 3.44000 3.44432 3.48761 3.49548 3.49773 3.70307 3.79207 4.52984 4.61604 4.64238 4.93414 5.01603 5.11960 5.15807 5.18670 5.27444 5.32565 5.56270 5.56680 5.65142 5.80321 5.82293 5.91860 5.97817 6.06505 6.12366 6.20903 6.30143 6.41189 6.48162 6.52279 6.63195 6.72287 6.73068 6.76880 6.77202 6.98440 7.01720 7.32135 7.49355 7.66076 7.88283 8.00230 8.31416 8.41179 8.61623 9.25650 9.87477 10.51178 11.43217 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009258 B = 0.004176 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.784245 B = 6703.229185 C = 7746.840249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.395 5.395 3 C 0.055 3.945 4 C -0.237 4.237 5 C 0.595 3.405 6 N -0.858 5.858 7 O -0.545 6.545 8 C -0.077 4.077 9 C -0.041 4.041 10 C 0.589 3.411 11 O -0.554 6.554 12 N -0.686 5.686 13 C 0.125 3.875 14 H 0.089 0.911 15 C 0.147 3.853 16 N -0.600 5.600 17 C -0.223 4.223 18 H 0.076 0.924 19 C -0.008 4.008 20 N -0.919 5.919 21 Si 0.912 3.088 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.142 3.858 26 C -0.087 4.087 27 C -0.132 4.132 28 C -0.128 4.128 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.175 0.825 33 H 0.397 0.603 34 H 0.401 0.599 35 H 0.154 0.846 36 H 0.400 0.600 37 H 0.022 0.978 38 H 0.112 0.888 39 H 0.252 0.748 40 H 0.023 0.977 41 H 0.024 0.976 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 13.129 13.022 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.066 5.066 3 C -0.086 4.086 4 C -0.247 4.247 5 C 0.382 3.618 6 N -0.421 5.421 7 O -0.422 6.422 8 C -0.102 4.102 9 C -0.153 4.153 10 C 0.376 3.624 11 O -0.434 6.434 12 N -0.335 5.335 13 C 0.020 3.980 14 H 0.107 0.893 15 C 0.021 3.979 16 N -0.327 5.327 17 C -0.352 4.352 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.742 3.258 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.212 1.212 25 C 0.016 3.984 26 C -0.088 4.088 27 C -0.190 4.190 28 C -0.185 4.185 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.192 0.808 33 H 0.224 0.776 34 H 0.232 0.768 35 H 0.172 0.828 36 H 0.235 0.765 37 H 0.039 0.961 38 H 0.130 0.870 39 H 0.062 0.938 40 H 0.041 0.959 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.802 12.399 12.701 18.152 hybrid contribution 0.720 0.610 -0.963 1.348 sum -3.082 13.009 11.738 17.790 Atomic orbital electron populations 1.22395 0.75427 1.05349 1.04631 1.43570 1.07370 1.04877 1.50786 1.22274 0.89823 0.91850 1.04679 1.19455 0.91565 0.94321 1.19377 1.17434 0.88000 0.81737 0.74580 1.43676 1.11997 1.07098 1.79366 1.90828 1.25963 1.75196 1.50262 1.21149 0.95087 0.93826 1.00186 1.19939 0.89876 0.88165 1.17302 1.16803 0.85863 0.83037 0.76743 1.90744 1.15846 1.85046 1.51781 1.45476 1.10797 1.05731 1.71496 1.22580 0.96679 0.78501 1.00231 0.89315 1.22334 0.85635 1.00026 0.89902 1.44462 1.07800 1.79212 1.01177 1.18996 0.94635 1.38947 0.82577 0.90577 1.24759 0.95987 1.01845 0.97790 1.69785 1.07620 1.52060 1.27280 0.86198 0.78178 0.77727 0.83673 1.21260 1.21677 1.21168 1.21421 0.93477 0.97549 0.85937 1.21844 0.96462 0.95460 0.95046 1.21727 1.00221 1.00250 0.96754 1.21684 0.99731 0.95527 1.01605 0.90231 0.89761 0.87218 0.80770 0.77554 0.76809 0.82848 0.76462 0.96064 0.86996 0.93755 0.95923 0.95798 0.92825 0.92634 0.92815 0.91737 0.92656 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 10.43 59.85 0.62 1.25 16 2 N -0.40 -4.95 3.12 -120.13 -0.38 -5.33 16 3 C 0.06 0.57 10.86 -16.50 -0.18 0.39 16 4 C -0.24 -3.14 6.13 -105.02 -0.64 -3.78 16 5 C 0.60 7.90 8.09 -12.54 -0.10 7.80 16 6 N -0.86 -6.75 8.86 30.42 0.27 -6.48 16 7 O -0.55 -9.71 17.76 5.27 0.09 -9.62 16 8 C -0.08 -1.20 10.09 -39.09 -0.39 -1.59 16 9 C -0.04 -0.65 6.82 -82.41 -0.56 -1.21 16 10 C 0.59 10.79 7.77 -12.80 -0.10 10.69 16 11 O -0.55 -11.24 14.34 5.21 0.07 -11.17 16 12 N -0.69 -12.32 4.59 -52.99 -0.24 -12.57 16 13 C 0.13 2.40 2.65 -65.78 -0.17 2.23 16 14 H 0.09 1.71 7.47 -51.93 -0.39 1.32 16 15 C 0.15 3.57 5.28 -2.47 -0.01 3.56 16 16 N -0.60 -15.05 3.40 -169.99 -0.58 -15.63 16 17 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 20 N -0.92 -27.25 10.09 55.49 0.56 -26.69 16 21 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.14 2.87 6.41 -3.07 -0.02 2.85 16 26 C -0.09 -1.45 0.80 -152.68 -0.12 -1.57 16 27 C -0.13 -1.79 8.07 37.16 0.30 -1.49 16 28 C -0.13 -1.93 8.41 37.16 0.31 -1.61 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.53 8.11 -51.93 -0.42 0.11 16 31 H 0.11 1.40 6.48 -51.93 -0.34 1.07 16 32 H 0.18 0.88 7.44 -52.49 -0.39 0.49 16 33 H 0.40 1.76 7.74 -40.82 -0.32 1.45 16 34 H 0.40 2.65 8.93 -40.82 -0.36 2.29 16 35 H 0.15 2.41 7.43 -52.49 -0.39 2.02 16 36 H 0.40 6.71 5.91 -40.82 -0.24 6.47 16 37 H 0.02 0.56 7.80 -51.93 -0.41 0.15 16 38 H 0.11 3.18 5.88 -51.93 -0.31 2.88 16 39 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.02 0.46 7.77 -51.93 -0.40 0.05 16 41 H 0.02 0.49 7.84 -51.93 -0.41 0.08 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.72 6.42 -51.93 -0.33 0.39 16 45 H 0.06 1.10 7.57 -51.93 -0.39 0.70 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -36.40 380.25 -7.57 -43.97 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -6.75 Total: 9.44 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: -1.32 Total: 10.81 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -0.37 Total: -66.70 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.17 Total: -20.78 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.40 -7.57 -43.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974764746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.389 kcal (2) G-P(sol) polarization free energy of solvation -36.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds