Wall clock time and date at job start Tue Mar 31 2020 19:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34269 * 125.38762 * 2 1 4 4 C 1.38204 * 108.39661 * 179.83619 * 3 2 1 5 5 C 1.47391 * 126.46421 * 180.16558 * 4 3 2 6 6 N 1.34776 * 120.00152 * 0.30338 * 5 4 3 7 7 O 1.21612 * 120.00064 * 180.30464 * 5 4 3 8 8 C 1.41307 * 107.07590 * 0.42372 * 4 3 2 9 9 C 1.36356 * 107.01044 * 359.74430 * 8 4 3 10 10 C 1.46800 * 125.85305 * 179.97438 * 9 8 4 11 11 O 1.21678 * 120.00280 * 185.00079 * 10 9 8 12 12 N 1.34777 * 120.00084 * 4.98942 * 10 9 8 13 13 C 1.46502 * 120.00542 * 185.10061 * 12 10 9 14 14 H 1.09003 * 110.88271 * 325.70908 * 13 12 10 15 15 C 1.54911 * 111.00072 * 89.58213 * 13 12 10 16 16 N 1.47531 * 104.77882 * 81.09596 * 15 13 12 17 17 C 1.36936 * 125.63205 * 204.08510 * 16 15 13 18 18 H 1.08001 * 120.00274 * 180.02562 * 17 16 15 19 19 C 1.38817 * 120.00104 * 0.03488 * 17 16 15 20 20 N 1.31615 * 119.99925 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99835 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47280 * 60.00468 * 21 19 17 23 23 H 1.48503 * 109.47210 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47484 * 300.00056 * 21 19 17 25 25 C 1.47016 * 108.71776 * 24.11402 * 16 15 13 26 26 C 1.54327 * 107.27267 * 358.94572 * 25 16 15 27 27 C 1.52996 * 110.71897 * 219.44107 * 26 25 16 28 28 C 1.53001 * 110.72020 * 96.16933 * 26 25 16 29 29 H 1.09004 * 109.47109 * 264.10615 * 1 2 3 30 30 H 1.08995 * 109.47770 * 24.11225 * 1 2 3 31 31 H 1.09006 * 109.46859 * 144.11024 * 1 2 3 32 32 H 1.08002 * 125.80243 * 359.97438 * 3 2 1 33 33 H 0.97000 * 119.99784 * 359.97438 * 6 5 4 34 34 H 0.96997 * 120.00431 * 179.97438 * 6 5 4 35 35 H 1.07995 * 126.49638 * 179.74218 * 8 4 3 36 36 H 0.96998 * 119.99828 * 5.10652 * 12 10 9 37 37 H 1.08997 * 110.36577 * 199.90250 * 15 13 12 38 38 H 1.08992 * 110.37234 * 322.23014 * 15 13 12 39 39 H 0.97005 * 119.99856 * 179.97438 * 20 19 17 40 40 H 1.09005 * 109.88411 * 239.52420 * 25 16 15 41 41 H 1.09003 * 110.00703 * 118.43457 * 25 16 15 42 42 H 1.09002 * 109.46786 * 173.52140 * 27 26 25 43 43 H 1.09002 * 109.47545 * 293.52363 * 27 26 25 44 44 H 1.09000 * 109.47338 * 53.52505 * 27 26 25 45 45 H 1.08998 * 109.46841 * 306.47952 * 28 26 25 46 46 H 1.09001 * 109.46985 * 66.47616 * 28 26 25 47 47 H 1.08999 * 109.47211 * 186.47752 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2426 1.0946 0.0000 4 6 3.5643 0.6908 0.0037 5 6 4.7484 1.5684 0.0085 6 7 4.5948 2.9074 0.0157 7 8 5.8640 1.0844 0.0059 8 6 3.5664 -0.7223 -0.0039 9 6 2.2631 -1.1231 -0.0061 10 6 1.7911 -2.5131 -0.0142 11 8 0.6014 -2.7512 -0.1073 12 7 2.6754 -3.5257 0.0813 13 6 2.2175 -4.9121 -0.0388 14 1 1.2213 -5.0307 0.3876 15 6 2.2490 -5.3812 -1.5149 16 7 3.6560 -5.7492 -1.7629 17 6 4.2702 -5.7742 -2.9865 18 1 5.3091 -6.0592 -3.0635 19 6 3.5577 -5.4331 -4.1280 20 7 2.2918 -5.0851 -4.0341 21 14 4.3955 -5.4680 -5.7972 22 1 4.8847 -6.8420 -6.0769 23 1 3.4253 -5.0643 -6.8465 24 1 5.5426 -4.5250 -5.7952 25 6 4.2891 -6.0850 -0.4793 26 6 3.2251 -5.8899 0.6214 27 6 3.8475 -5.2638 1.8710 28 6 2.5469 -7.2188 0.9604 29 1 -0.3633 -0.1055 1.0223 30 1 -0.3634 0.9379 -0.4198 31 1 -0.3633 -0.8326 -0.6025 32 1 1.8943 2.1170 -0.0004 33 1 3.7049 3.2934 0.0173 34 1 5.3740 3.4850 0.0191 35 1 4.4355 -1.3633 -0.0074 36 1 3.6151 -3.3365 0.2298 37 1 1.6008 -6.2468 -1.6517 38 1 1.9456 -4.5705 -2.1772 39 1 1.7940 -4.8464 -4.8317 40 1 5.1353 -5.4221 -0.2986 41 1 4.6260 -7.1216 -0.4896 42 1 3.0620 -5.0294 2.5895 43 1 4.5507 -5.9666 2.3178 44 1 4.3730 -4.3493 1.5959 45 1 2.1618 -7.6734 0.0477 46 1 3.2718 -7.8892 1.4223 47 1 1.7242 -7.0407 1.6528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974764746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:24 Heat of formation + Delta-G solvation = -26.983219 kcal Electronic energy + Delta-G solvation = -29940.157830 eV Core-core repulsion = 25930.252677 eV Total energy + Delta-G solvation = -4009.905152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.68436 -40.97569 -39.91626 -39.07778 -35.71274 -34.82692 -34.65676 -33.59050 -32.60722 -30.96037 -29.46980 -27.99255 -27.81363 -27.40024 -25.34384 -24.22764 -23.38599 -21.98022 -20.92398 -20.73982 -19.97519 -19.13790 -18.70662 -17.98689 -17.38115 -16.98590 -16.83720 -16.69581 -16.40234 -15.75877 -15.62086 -15.45157 -15.22239 -15.10650 -14.69128 -14.64133 -14.52096 -14.11748 -13.74588 -13.68000 -13.46151 -13.20753 -13.15317 -13.03107 -13.00153 -12.84460 -12.62699 -12.57445 -12.16838 -11.79512 -11.77217 -11.46002 -11.36651 -11.21277 -11.02288 -10.75516 -10.61141 -10.04089 -9.90126 -9.36016 -8.84346 -7.76198 -5.20454 0.44114 0.77746 1.43019 1.46402 1.52161 1.56789 2.19565 2.38451 2.48346 2.59869 2.79207 3.33455 3.54170 3.67462 3.74747 3.78846 3.92771 3.96568 4.06702 4.20943 4.32696 4.40424 4.42135 4.51232 4.70128 4.72324 4.78248 4.83737 4.86726 4.91941 4.98177 5.04039 5.10107 5.19843 5.28349 5.32275 5.40569 5.47942 5.52533 5.65462 5.70244 5.82125 5.99222 6.13011 6.30589 6.54676 6.60745 7.09548 7.19218 7.47459 7.78958 8.42429 9.24275 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009258 B = 0.004176 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.784245 B = 6703.229185 C = 7746.840249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.397 5.397 3 C 0.102 3.898 4 C -0.264 4.264 5 C 0.594 3.406 6 N -0.828 5.828 7 O -0.603 6.603 8 C -0.088 4.088 9 C -0.075 4.075 10 C 0.583 3.417 11 O -0.582 6.582 12 N -0.685 5.685 13 C 0.139 3.861 14 H 0.088 0.912 15 C 0.156 3.844 16 N -0.618 5.618 17 C -0.235 4.235 18 H 0.081 0.919 19 C -0.065 4.065 20 N -0.947 5.947 21 Si 0.975 3.025 22 H -0.276 1.276 23 H -0.296 1.296 24 H -0.280 1.280 25 C 0.137 3.863 26 C -0.073 4.073 27 C -0.125 4.125 28 C -0.125 4.125 29 H 0.092 0.908 30 H 0.131 0.869 31 H 0.074 0.926 32 H 0.239 0.761 33 H 0.417 0.583 34 H 0.411 0.589 35 H 0.137 0.863 36 H 0.405 0.595 37 H -0.009 1.009 38 H 0.068 0.932 39 H 0.243 0.757 40 H 0.029 0.971 41 H 0.027 0.973 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.035 0.965 46 H 0.079 0.921 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.015 15.578 14.722 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.067 5.067 3 C -0.041 4.041 4 C -0.273 4.273 5 C 0.381 3.619 6 N -0.392 5.392 7 O -0.485 6.485 8 C -0.114 4.114 9 C -0.186 4.186 10 C 0.372 3.628 11 O -0.464 6.464 12 N -0.334 5.334 13 C 0.033 3.967 14 H 0.106 0.894 15 C 0.029 3.971 16 N -0.344 5.344 17 C -0.364 4.364 18 H 0.099 0.901 19 C -0.258 4.258 20 N -0.597 5.597 21 Si 0.803 3.197 22 H -0.202 1.202 23 H -0.222 1.222 24 H -0.206 1.206 25 C 0.012 3.988 26 C -0.074 4.074 27 C -0.182 4.182 28 C -0.182 4.182 29 H 0.111 0.889 30 H 0.149 0.851 31 H 0.092 0.908 32 H 0.255 0.745 33 H 0.249 0.751 34 H 0.243 0.757 35 H 0.155 0.845 36 H 0.241 0.759 37 H 0.009 0.991 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.098 0.902 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.668 14.882 14.437 21.056 hybrid contribution 0.652 -0.070 -1.487 1.625 sum -3.016 14.812 12.951 19.905 Atomic orbital electron populations 1.22567 0.73781 1.06390 1.05215 1.43826 1.08393 1.04379 1.50120 1.23162 0.88094 0.93480 0.99344 1.19549 0.93232 0.93294 1.21265 1.17500 0.87025 0.83197 0.74168 1.43381 1.13778 1.05201 1.76877 1.90802 1.27873 1.76512 1.53337 1.21191 0.94559 0.95455 1.00190 1.19553 0.90611 0.87877 1.20541 1.17252 0.85500 0.84263 0.75811 1.90718 1.16905 1.85731 1.53083 1.45414 1.11123 1.05292 1.71575 1.22250 0.97815 0.79876 0.96790 0.89413 1.21979 0.85047 0.97317 0.92725 1.44683 1.08216 1.79283 1.02175 1.19394 0.95009 1.37979 0.83996 0.90093 1.25568 0.96642 1.02321 1.01230 1.70089 1.08947 1.53348 1.27326 0.85205 0.77050 0.78030 0.79393 1.20206 1.22227 1.20583 1.21644 0.94563 0.97559 0.85014 1.21828 0.94629 0.95788 0.95194 1.21690 1.00942 1.00477 0.95130 1.21680 1.00921 0.94687 1.00939 0.88934 0.85071 0.90755 0.74498 0.75075 0.75688 0.84484 0.75880 0.99145 0.91354 0.94744 0.95300 0.95458 0.91359 0.90317 0.92934 0.94534 0.90196 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.05 10.43 127.77 1.33 2.39 16 2 N -0.40 -9.12 3.12 -533.97 -1.67 -10.79 16 3 C 0.10 1.68 10.86 84.31 0.92 2.59 16 4 C -0.26 -6.55 6.13 -20.12 -0.12 -6.68 16 5 C 0.59 14.84 8.09 86.65 0.70 15.54 16 6 N -0.83 -10.25 8.86 -175.91 -1.56 -11.81 16 7 O -0.60 -21.65 17.76 -4.07 -0.07 -21.72 16 8 C -0.09 -2.77 10.09 22.59 0.23 -2.55 16 9 C -0.07 -2.39 6.82 40.01 0.27 -2.12 16 10 C 0.58 22.26 7.77 86.48 0.67 22.93 16 11 O -0.58 -24.74 14.34 -4.28 -0.06 -24.80 16 12 N -0.69 -25.60 4.59 -439.80 -2.02 -27.62 16 13 C 0.14 5.50 2.65 46.38 0.12 5.63 16 14 H 0.09 3.51 7.47 -2.39 -0.02 3.49 16 15 C 0.16 8.06 5.28 86.84 0.46 8.52 16 16 N -0.62 -32.20 3.40 -691.72 -2.35 -34.55 16 17 C -0.23 -13.49 10.27 84.03 0.86 -12.63 16 18 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 19 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 20 N -0.95 -59.18 10.09 21.65 0.22 -58.96 16 21 Si 0.97 47.67 29.55 68.60 2.03 49.70 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 24 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 25 C 0.14 5.57 6.41 86.73 0.56 6.13 16 26 C -0.07 -2.40 0.80 -50.99 -0.04 -2.45 16 27 C -0.12 -3.12 8.07 71.98 0.58 -2.54 16 28 C -0.12 -3.62 8.41 71.98 0.61 -3.02 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.13 1.04 8.11 -2.39 -0.02 1.02 16 31 H 0.07 1.91 6.48 -2.38 -0.02 1.89 16 32 H 0.24 0.66 7.44 -2.91 -0.02 0.64 16 33 H 0.42 1.60 7.74 -92.71 -0.72 0.88 16 34 H 0.41 4.20 8.93 -92.71 -0.83 3.37 16 35 H 0.14 4.61 7.43 -2.91 -0.02 4.58 16 36 H 0.40 14.13 5.91 -92.71 -0.55 13.58 16 37 H -0.01 -0.52 7.80 -2.39 -0.02 -0.54 16 38 H 0.07 4.18 5.88 -2.39 -0.01 4.16 16 39 H 0.24 14.93 8.31 -92.70 -0.77 14.16 16 40 H 0.03 1.15 7.77 -2.38 -0.02 1.13 16 41 H 0.03 1.10 7.84 -2.39 -0.02 1.08 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.05 1.33 6.42 -2.39 -0.02 1.32 16 45 H 0.04 1.25 7.57 -2.39 -0.02 1.24 16 46 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -87.29 380.25 1.06 -86.23 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: -1.06 Total: 25.92 kcal Atomic # 6 Polarization: 20.79 SS G_CDS: 7.61 Total: 28.40 kcal Atomic # 7 Polarization: -136.35 SS G_CDS: -7.38 Total: -143.73 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -0.13 Total: -46.52 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -87.29 1.06 -86.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974764746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.246 kcal (2) G-P(sol) polarization free energy of solvation -87.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds