Wall clock time and date at job start Tue Mar 31 2020 19:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 110.88687 * 2 1 4 4 C 1.54912 * 111.00796 * 123.87989 * 2 1 3 5 5 N 1.47424 * 104.83319 * 155.08170 * 4 2 1 6 6 C 1.36940 * 125.64690 * 155.83744 * 5 4 2 7 7 H 1.08001 * 119.99797 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99733 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00177 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99650 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46981 * 59.99783 * 10 8 6 12 12 H 1.48499 * 109.46915 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47382 * 299.99803 * 10 8 6 14 14 C 1.47023 * 108.70235 * 335.87439 * 5 4 2 15 15 C 1.54320 * 107.27576 * 1.05739 * 14 5 4 16 16 H 1.09003 * 110.71896 * 140.55076 * 15 14 5 17 17 N 1.46499 * 110.72303 * 263.83262 * 15 14 5 18 18 C 1.34783 * 119.99713 * 268.52137 * 17 15 14 19 19 O 1.21668 * 119.99834 * 359.97438 * 18 17 15 20 20 C 1.46918 * 119.99768 * 179.97438 * 18 17 15 21 21 C 1.41695 * 126.56187 * 359.68404 * 20 18 17 22 22 N 1.30558 * 108.19227 * 179.83596 * 21 20 18 23 23 N 1.39356 * 109.06191 * 0.36857 * 22 21 20 24 24 C 1.35149 * 108.46166 * 359.82943 * 23 22 21 25 25 O 1.35464 * 123.87055 * 179.85723 * 24 23 22 26 26 C 1.43532 * 115.05417 * 344.47037 * 25 24 23 27 27 C 1.53250 * 109.18584 * 46.91560 * 26 25 24 28 28 C 1.46796 * 127.98053 * 179.88253 * 23 22 21 29 29 H 1.09002 * 109.47153 * 297.57100 * 1 2 3 30 30 H 1.09001 * 109.46832 * 177.57291 * 1 2 3 31 31 H 1.09004 * 109.47261 * 57.57273 * 1 2 3 32 32 H 1.09000 * 109.46998 * 59.29833 * 3 2 1 33 33 H 1.09003 * 109.47284 * 179.29991 * 3 2 1 34 34 H 1.09000 * 109.46974 * 299.29696 * 3 2 1 35 35 H 1.08992 * 110.36777 * 273.92592 * 4 2 1 36 36 H 1.08998 * 110.36145 * 36.24506 * 4 2 1 37 37 H 0.97001 * 119.99789 * 180.02562 * 9 8 6 38 38 H 1.09006 * 109.88301 * 120.47721 * 14 5 4 39 39 H 1.09004 * 109.88165 * 241.63581 * 14 5 4 40 40 H 0.97000 * 120.00135 * 88.51658 * 17 15 14 41 41 H 1.08000 * 125.90548 * 359.96450 * 21 20 18 42 42 H 1.09006 * 109.51983 * 166.82578 * 26 25 24 43 43 H 1.09001 * 109.52393 * 286.99728 * 26 25 24 44 44 H 1.09000 * 109.50893 * 55.81240 * 27 26 25 45 45 H 1.08998 * 109.51110 * 175.90841 * 27 26 25 46 46 H 1.09007 * 109.75805 * 43.27120 * 28 23 22 47 47 H 1.08996 * 109.80343 * 282.54474 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 3.4272 -1.2428 0.7737 6 6 4.4645 -1.5648 1.6077 7 1 4.3339 -1.5090 2.6783 8 6 5.6838 -1.9628 1.0769 9 7 5.8428 -2.0313 -0.2279 10 14 7.0991 -2.4014 2.2145 11 1 6.7001 -3.5351 3.0866 12 1 8.2816 -2.7920 1.4056 13 1 7.4405 -1.2262 3.0556 14 6 3.4674 -1.2744 -0.6956 15 6 2.0861 -0.8084 -1.2020 16 1 2.1922 -0.1706 -2.0796 17 7 1.2268 -1.9579 -1.4955 18 6 1.2061 -2.4845 -2.7361 19 8 1.9007 -2.0048 -3.6122 20 6 0.3447 -3.6377 -3.0303 21 6 -0.5106 -4.3065 -2.1198 22 7 -1.1095 -5.2746 -2.7590 23 7 -0.6736 -5.2840 -4.0827 24 6 0.2181 -4.2817 -4.2467 25 8 0.8414 -4.0100 -5.4183 26 6 0.7712 -5.0542 -6.4006 27 6 -0.6726 -5.5590 -6.4968 28 6 -1.0759 -6.1966 -5.1598 29 1 -0.3633 0.4757 0.9110 30 1 -0.3633 -1.0268 -0.0435 31 1 -0.3634 0.5511 -0.8674 32 1 1.7148 1.9560 0.8836 33 1 3.1651 1.4026 0.0126 34 1 1.7352 1.9482 -0.8962 35 1 2.1560 -0.1713 2.0837 36 1 1.4519 -1.6698 1.4030 37 1 6.6947 -2.3098 -0.5987 38 1 4.2426 -0.6001 -1.0598 39 1 3.6651 -2.2897 -1.0393 40 1 0.6727 -2.3402 -0.7971 41 1 -0.6455 -4.0571 -1.0777 42 1 1.0863 -4.6652 -7.3689 43 1 1.4253 -5.8752 -6.1068 44 1 -1.3366 -4.7229 -6.7162 45 1 -0.7466 -6.3010 -7.2918 46 1 -2.1555 -6.3450 -5.1331 47 1 -0.5694 -7.1544 -5.0406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974769033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:57 Heat of formation + Delta-G solvation = 11.620786 kcal Electronic energy + Delta-G solvation = -29978.673418 eV Core-core repulsion = 25970.442261 eV Total energy + Delta-G solvation = -4008.231157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.95835 -40.99598 -39.69992 -39.08274 -35.64445 -35.61993 -34.37934 -32.55935 -31.96274 -31.04755 -29.51526 -27.99813 -27.41016 -27.27711 -25.52216 -24.37805 -23.46704 -22.15124 -21.23955 -20.78878 -20.23364 -19.19870 -18.63093 -18.02331 -17.53419 -17.17495 -16.67461 -16.36968 -16.12775 -15.83899 -15.71345 -15.49467 -15.35404 -15.20241 -14.88967 -14.69902 -14.33277 -13.91066 -13.70554 -13.43131 -13.40160 -13.10026 -12.92486 -12.78379 -12.69219 -12.61286 -12.60245 -12.51206 -12.17521 -12.13778 -11.84989 -11.78649 -11.65753 -11.45641 -11.25042 -10.87387 -10.67251 -10.30200 -9.94785 -9.47354 -8.83901 -7.78611 -5.15389 0.45682 1.07059 1.09933 1.45380 1.49438 1.55676 1.99873 2.35254 2.52869 2.53176 3.14844 3.39066 3.48672 3.56884 3.67582 3.79293 3.89316 3.97564 4.04136 4.05354 4.15341 4.24305 4.31152 4.46999 4.49453 4.55881 4.58149 4.59793 4.80377 4.87434 4.91196 4.95011 5.01640 5.06830 5.12334 5.20479 5.23794 5.38162 5.39195 5.41838 5.50711 5.62824 5.78429 5.85036 6.15729 6.22172 6.41548 6.76097 7.12513 7.45301 7.82967 8.47904 9.30320 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.003412 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.528428 B = 8205.424565 C = 9174.900064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.075 4.075 3 C -0.123 4.123 4 C 0.138 3.862 5 N -0.619 5.619 6 C -0.236 4.236 7 H 0.088 0.912 8 C -0.071 4.071 9 N -0.955 5.955 10 Si 0.978 3.022 11 H -0.275 1.275 12 H -0.301 1.301 13 H -0.274 1.274 14 C 0.194 3.806 15 C 0.140 3.860 16 H 0.074 0.926 17 N -0.694 5.694 18 C 0.591 3.409 19 O -0.594 6.594 20 C -0.335 4.335 21 C 0.112 3.888 22 N -0.295 5.295 23 N -0.392 5.392 24 C 0.330 3.670 25 O -0.295 6.295 26 C 0.026 3.974 27 C -0.162 4.162 28 C 0.114 3.886 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.028 0.972 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.034 0.966 37 H 0.242 0.758 38 H 0.003 0.997 39 H -0.002 1.002 40 H 0.408 0.592 41 H 0.224 0.776 42 H 0.144 0.856 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.156 0.844 46 H 0.125 0.875 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.581 -6.630 -10.233 23.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.076 4.076 3 C -0.181 4.181 4 C 0.014 3.986 5 N -0.346 5.346 6 C -0.365 4.365 7 H 0.106 0.894 8 C -0.264 4.264 9 N -0.604 5.604 10 Si 0.806 3.194 11 H -0.201 1.201 12 H -0.227 1.227 13 H -0.200 1.200 14 C 0.068 3.932 15 C 0.034 3.966 16 H 0.092 0.908 17 N -0.345 5.345 18 C 0.381 3.619 19 O -0.476 6.476 20 C -0.350 4.350 21 C -0.076 4.076 22 N -0.117 5.117 23 N -0.187 5.187 24 C 0.155 3.845 25 O -0.199 6.199 26 C -0.048 4.048 27 C -0.200 4.200 28 C -0.005 4.005 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.021 0.979 39 H 0.016 0.984 40 H 0.245 0.755 41 H 0.241 0.759 42 H 0.162 0.838 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.174 0.826 46 H 0.143 0.857 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.605 -7.209 -11.012 24.450 hybrid contribution 2.008 0.025 0.408 2.049 sum -18.597 -7.184 -10.604 22.581 Atomic orbital electron populations 1.21649 0.90801 1.02646 1.02994 1.21994 0.97332 0.95178 0.93105 1.21589 0.99891 0.94002 1.02598 1.21900 0.85430 0.95584 0.95718 1.44672 1.09338 1.78886 1.01655 1.19464 0.90199 1.37014 0.89807 0.89396 1.25685 1.00666 1.02792 0.97218 1.70257 1.24022 1.54925 1.11186 0.85160 0.78398 0.78333 0.77498 1.20142 1.22746 1.20034 1.21072 0.91985 0.96444 0.83708 1.22018 0.90089 0.86992 0.97485 0.90791 1.45483 1.45219 1.32896 1.10907 1.17337 0.80455 0.81923 0.82205 1.90758 1.45359 1.63759 1.47741 1.19173 1.14949 1.07981 0.92856 1.24385 0.91781 0.90825 1.00613 1.76980 1.23946 1.23012 0.87753 1.49348 1.33056 1.26181 1.10092 1.19836 0.87847 0.89185 0.87631 1.86740 1.69811 1.42599 1.20772 1.23721 0.98698 0.90245 0.92148 1.22683 0.95405 1.04395 0.97553 1.22532 1.04539 0.91791 0.81597 0.90236 0.91668 0.91933 0.90311 0.95241 0.91687 0.93232 0.94798 0.94902 0.97854 0.98414 0.75475 0.75932 0.83848 0.90187 0.89505 0.82634 0.85650 0.87311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 8.35 71.98 0.60 -2.26 16 2 C -0.07 -2.46 0.83 -50.78 -0.04 -2.50 16 3 C -0.12 -3.94 8.59 71.98 0.62 -3.33 16 4 C 0.14 5.38 6.12 86.86 0.53 5.91 16 5 N -0.62 -32.27 3.38 -691.98 -2.34 -34.62 16 6 C -0.24 -13.46 10.28 84.03 0.86 -12.60 16 7 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 8 C -0.07 -4.23 5.49 84.86 0.47 -3.76 16 9 N -0.95 -61.65 10.31 21.65 0.22 -61.42 16 10 Si 0.98 47.62 29.55 68.60 2.03 49.65 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 13 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 14 C 0.19 10.51 4.76 86.73 0.41 10.92 16 15 C 0.14 5.80 2.59 46.18 0.12 5.92 16 16 H 0.07 3.29 7.46 -2.39 -0.02 3.27 16 17 N -0.69 -25.21 4.40 -440.63 -1.94 -27.16 16 18 C 0.59 24.00 7.80 86.52 0.67 24.67 16 19 O -0.59 -29.63 16.18 -2.00 -0.03 -29.66 16 20 C -0.33 -11.17 6.13 -20.16 -0.12 -11.29 16 21 C 0.11 2.90 11.51 85.74 0.99 3.89 16 22 N -0.30 -7.51 12.54 -55.94 -0.70 -8.22 16 23 N -0.39 -9.15 4.04 -456.67 -1.85 -11.00 16 24 C 0.33 10.04 7.50 84.18 0.63 10.67 16 25 O -0.29 -8.76 10.18 -85.38 -0.87 -9.63 16 26 C 0.03 0.39 7.01 72.07 0.51 0.90 16 27 C -0.16 -1.28 6.17 30.85 0.19 -1.09 16 28 C 0.11 1.31 7.41 86.50 0.64 1.95 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.35 6.27 -2.39 -0.01 1.34 16 31 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.03 1.16 7.86 -2.39 -0.02 1.14 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.05 1.85 8.05 -2.39 -0.02 1.83 16 36 H 0.03 1.23 8.04 -2.39 -0.02 1.21 16 37 H 0.24 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.00 0.21 7.38 -2.38 -0.02 0.19 16 39 H 0.00 -0.15 7.41 -2.38 -0.02 -0.17 16 40 H 0.41 12.02 6.01 -92.71 -0.56 11.47 16 41 H 0.22 4.03 7.51 -2.91 -0.02 4.00 16 42 H 0.14 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.16 -0.10 8.14 -2.39 -0.02 -0.12 16 46 H 0.13 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -89.04 375.98 2.03 -87.01 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.43 Total: 17.02 kcal Atomic # 6 Polarization: 20.94 SS G_CDS: 7.08 Total: 28.01 kcal Atomic # 7 Polarization: -135.80 SS G_CDS: -6.60 Total: -142.41 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -0.90 Total: -39.29 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -89.04 2.03 -87.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974769033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.634 kcal (2) G-P(sol) polarization free energy of solvation -89.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds