Wall clock time and date at job start Tue Mar 31 2020 18:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35355 * 117.00051 * 2 1 4 4 C 1.38991 * 126.40945 * 89.65977 * 3 2 1 5 5 C 1.46922 * 126.49502 * 359.97438 * 4 3 2 6 6 O 1.21669 * 120.00094 * 89.99647 * 5 4 3 7 7 N 1.34778 * 120.00051 * 270.00557 * 5 4 3 8 8 C 1.46499 * 119.99995 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.47101 * 179.97438 * 8 7 5 10 10 H 1.08997 * 115.49524 * 29.61283 * 9 8 7 11 11 C 1.52999 * 117.43929 * 244.24091 * 9 8 7 12 12 H 1.08997 * 119.54516 * 4.11405 * 11 9 8 13 13 C 1.54388 * 118.12122 * 160.81192 * 11 9 8 14 14 N 1.48140 * 104.61986 * 87.18838 * 13 11 9 15 15 C 1.36939 * 127.84258 * 140.43847 * 14 13 11 16 16 H 1.07998 * 120.00267 * 195.63701 * 15 14 13 17 17 C 1.38819 * 119.99533 * 15.63563 * 15 14 13 18 18 N 1.31613 * 119.99918 * 9.67335 * 17 15 14 19 19 Si 1.86801 * 119.99657 * 189.67711 * 17 15 14 20 20 H 1.48500 * 109.47383 * 59.99985 * 19 17 15 21 21 H 1.48504 * 109.47061 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47138 * 299.99637 * 19 17 15 23 23 C 1.48150 * 104.32506 * 320.41268 * 14 13 11 24 24 C 1.52998 * 117.44197 * 175.00133 * 9 8 7 25 25 H 1.09003 * 119.53851 * 355.87984 * 24 9 8 26 26 C 1.41457 * 107.00879 * 180.24058 * 4 3 2 27 27 C 1.50702 * 125.93230 * 179.73597 * 26 4 3 28 28 N 1.30317 * 108.13803 * 359.55769 * 26 4 3 29 29 N 1.34664 * 126.40015 * 269.63605 * 3 2 1 30 30 C 1.46495 * 125.74515 * 0.05112 * 29 3 2 31 31 H 1.08988 * 109.47268 * 184.88807 * 1 2 3 32 32 H 1.09007 * 109.47059 * 304.89550 * 1 2 3 33 33 H 1.09003 * 109.47302 * 64.88749 * 1 2 3 34 34 H 0.96999 * 120.00118 * 359.97438 * 7 5 4 35 35 H 1.09006 * 109.47435 * 59.99549 * 8 7 5 36 36 H 1.09000 * 109.47118 * 299.99318 * 8 7 5 37 37 H 1.09000 * 110.40850 * 205.97201 * 13 11 9 38 38 H 1.08997 * 110.40577 * 328.28103 * 13 11 9 39 39 H 0.97008 * 119.99721 * 179.97438 * 18 17 15 40 40 H 1.08999 * 110.40596 * 280.80313 * 23 14 13 41 41 H 1.08996 * 110.40806 * 158.37052 * 23 14 13 42 42 H 1.08998 * 109.46899 * 89.99925 * 27 26 4 43 43 H 1.09000 * 109.47003 * 209.99774 * 27 26 4 44 44 H 1.09005 * 109.46864 * 330.00075 * 27 26 4 45 45 H 1.09000 * 109.47008 * 84.80849 * 30 29 3 46 46 H 1.09004 * 109.47145 * 204.80700 * 30 29 3 47 47 H 1.08999 * 109.47465 * 324.81584 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.4121 1.9441 1.1186 5 6 2.2082 1.5633 2.5229 6 8 3.0623 0.9269 3.1108 7 7 1.0748 1.9188 3.1597 8 6 0.8716 1.5396 4.5601 9 6 -0.4841 2.0631 5.0387 10 1 -1.2523 2.1475 4.2702 11 6 -0.4814 3.1133 6.1514 12 1 0.4672 3.5041 6.5193 13 6 -1.7480 3.9754 6.3413 14 7 -2.6079 3.1816 7.2497 15 6 -3.3855 3.6363 8.2810 16 1 -3.7630 2.9438 9.0188 17 6 -3.6885 4.9876 8.3783 18 7 -3.3939 5.8010 7.3865 19 14 -4.5141 5.6511 9.9169 20 1 -3.6475 5.3921 11.0947 21 1 -4.7291 7.1134 9.7719 22 1 -5.8228 4.9755 10.1071 23 6 -2.4362 1.7841 6.7887 24 6 -0.9352 1.6685 6.4464 25 1 -0.3245 0.9830 7.0341 26 6 3.0153 3.1342 0.6487 27 6 3.5667 4.2444 1.5058 28 7 3.0149 3.1022 -0.6541 29 7 2.4125 1.9149 -1.0839 30 6 2.2155 1.5112 -2.4782 31 1 -0.3633 -1.0238 0.0876 32 1 -0.3633 0.5879 0.8429 33 1 -0.3634 0.4361 -0.9305 34 1 0.3939 2.4264 2.6910 35 1 1.6639 1.9709 5.1720 36 1 0.8941 0.4535 4.6493 37 1 -1.4922 4.9311 6.7988 38 1 -2.2466 4.1341 5.3852 39 1 -3.6060 6.7452 7.4543 40 1 -3.0435 1.5989 5.9027 41 1 -2.6996 1.0866 7.5838 42 1 4.6175 4.0499 1.7205 43 1 3.4733 5.1926 0.9765 44 1 3.0079 4.2934 2.4405 45 1 1.2147 1.7976 -2.8015 46 1 2.9559 2.0051 -3.1076 47 1 2.3292 0.4305 -2.5632 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978829347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:36 Heat of formation + Delta-G solvation = 70.207889 kcal Electronic energy + Delta-G solvation = -28563.505072 eV Core-core repulsion = 24557.814443 eV Total energy + Delta-G solvation = -4005.690629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.86541 -39.44550 -38.59147 -38.55072 -34.88687 -34.29143 -33.28593 -30.99605 -30.46807 -29.71975 -27.99965 -27.20713 -27.01630 -26.03030 -24.77077 -22.43268 -21.14163 -20.86671 -20.43007 -19.69186 -19.26361 -18.23414 -17.06474 -16.87859 -16.80025 -16.32050 -15.91944 -15.13057 -15.07284 -14.75322 -14.69779 -14.22769 -13.92920 -13.80150 -13.62567 -13.48678 -13.09776 -12.95285 -12.80639 -12.66779 -12.65255 -12.49329 -12.12213 -11.82361 -11.60318 -11.26664 -11.11541 -10.82309 -10.71489 -10.58220 -10.30267 -10.17117 -10.05070 -9.74850 -9.52561 -9.40421 -9.11038 -8.92379 -8.85763 -8.64262 -6.88100 -5.81357 -3.15240 1.05444 1.79384 2.10883 2.55341 3.07999 3.27411 3.37897 3.42722 3.43780 4.07120 4.17599 4.45118 4.54693 4.66932 4.67814 4.76446 4.84830 4.87621 4.97391 4.98953 5.11421 5.21461 5.33140 5.37444 5.41966 5.43255 5.51672 5.55543 5.64674 5.76212 5.78475 5.92408 5.94066 5.95733 6.20415 6.23025 6.39502 6.55420 6.65484 6.71386 6.91338 6.95822 7.25569 7.34094 7.51239 7.51897 7.70300 8.19674 8.23147 9.09742 9.72631 10.49758 11.33026 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019011 B = 0.002266 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.450475 B =12354.045915 C =12650.501609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.306 6.306 3 C 0.293 3.707 4 C -0.285 4.285 5 C 0.601 3.399 6 O -0.533 6.533 7 N -0.716 5.716 8 C 0.155 3.845 9 C -0.150 4.150 10 H 0.101 0.899 11 C -0.167 4.167 12 H 0.103 0.897 13 C 0.184 3.816 14 N -0.594 5.594 15 C -0.228 4.228 16 H 0.076 0.924 17 C -0.005 4.005 18 N -0.916 5.916 19 Si 0.913 3.087 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.154 3.846 24 C -0.165 4.165 25 H 0.104 0.896 26 C 0.125 3.875 27 C -0.079 4.079 28 N -0.278 5.278 29 N -0.368 5.368 30 C 0.095 3.905 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.401 0.599 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.022 0.978 39 H 0.255 0.745 40 H 0.024 0.976 41 H 0.051 0.949 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.097 0.903 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.097 -8.370 -19.647 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.215 6.215 3 C 0.121 3.879 4 C -0.301 4.301 5 C 0.385 3.615 6 O -0.409 6.409 7 N -0.367 5.367 8 C 0.031 3.969 9 C -0.169 4.169 10 H 0.119 0.881 11 C -0.187 4.187 12 H 0.121 0.879 13 C 0.058 3.942 14 N -0.318 5.318 15 C -0.356 4.356 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.562 5.562 19 Si 0.743 3.257 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.210 1.210 23 C 0.028 3.972 24 C -0.186 4.186 25 H 0.122 0.878 26 C -0.042 4.042 27 C -0.138 4.138 28 N -0.103 5.103 29 N -0.157 5.157 30 C -0.046 4.046 31 H 0.127 0.873 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.236 0.764 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.040 0.960 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.115 0.885 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.900 -8.298 -20.250 24.448 hybrid contribution -1.173 0.134 0.986 1.538 sum 9.727 -8.164 -19.264 23.073 Atomic orbital electron populations 1.23256 0.76688 1.04777 1.01626 1.86033 1.21452 1.20933 1.93103 1.19140 0.96901 0.85543 0.86320 1.19838 1.18219 0.98891 0.93113 1.17001 0.81555 0.78569 0.84391 1.90803 1.43322 1.39239 1.67572 1.46051 1.20103 1.57161 1.13417 1.20893 0.95733 0.99645 0.80584 1.22515 0.96715 1.04725 0.92916 0.88069 1.24365 1.01553 0.92350 1.00405 0.87941 1.21038 0.85303 0.94733 0.93103 1.45201 1.50673 1.00411 1.35486 1.18952 1.24182 0.92220 1.00245 0.90637 1.24890 1.00541 0.96771 0.98054 1.69891 1.52083 1.03948 1.30262 0.86197 0.79216 0.77836 0.82494 1.21050 1.21545 1.21000 1.21135 0.90307 0.88967 0.96785 1.23846 0.99151 0.99723 0.95855 0.87753 1.22211 0.96231 0.94653 0.91066 1.20324 1.01624 0.94136 0.97705 1.77178 1.20648 0.99990 1.12474 1.48756 1.46121 1.14441 1.06352 1.21966 1.03506 1.01764 0.77317 0.87340 0.92123 0.92953 0.76439 0.91199 0.91218 0.89360 0.95976 0.93522 0.95872 0.93101 0.89674 0.89974 0.89848 0.90404 0.88457 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.13 101.05 1.12 1.34 16 2 O -0.31 -3.24 10.46 -17.76 -0.19 -3.43 16 3 C 0.29 3.43 7.03 -16.03 -0.11 3.32 16 4 C -0.28 -3.69 5.89 -104.88 -0.62 -4.31 16 5 C 0.60 8.61 7.34 -12.74 -0.09 8.51 16 6 O -0.53 -9.65 17.11 5.22 0.09 -9.56 16 7 N -0.72 -8.82 5.55 -61.54 -0.34 -9.16 16 8 C 0.15 2.07 5.95 -4.04 -0.02 2.04 16 9 C -0.15 -2.21 5.39 -90.62 -0.49 -2.70 16 10 H 0.10 1.48 8.04 -51.93 -0.42 1.06 16 11 C -0.17 -3.05 6.74 -89.22 -0.60 -3.65 16 12 H 0.10 1.80 8.12 -51.93 -0.42 1.38 16 13 C 0.18 4.30 5.69 -2.41 -0.01 4.29 16 14 N -0.59 -15.00 3.38 -168.86 -0.57 -15.57 16 15 C -0.23 -6.29 10.35 -15.06 -0.16 -6.44 16 16 H 0.08 2.01 7.85 -52.49 -0.41 1.60 16 17 C -0.01 -0.15 5.39 -17.43 -0.09 -0.25 16 18 N -0.92 -26.47 10.89 55.49 0.60 -25.87 16 19 Si 0.91 21.73 29.56 -169.99 -5.03 16.71 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.15 3.16 7.04 -2.41 -0.02 3.14 16 24 C -0.17 -2.84 6.85 -89.22 -0.61 -3.45 16 25 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 26 C 0.12 1.49 7.26 -82.01 -0.60 0.90 16 27 C -0.08 -0.75 10.28 36.01 0.37 -0.38 16 28 N -0.28 -3.32 12.48 33.91 0.42 -2.90 16 29 N -0.37 -3.83 3.99 -67.67 -0.27 -4.10 16 30 C 0.10 0.55 11.38 59.84 0.68 1.23 16 31 H 0.11 0.55 8.14 -51.94 -0.42 0.13 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.40 4.24 8.38 -40.82 -0.34 3.89 16 35 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.09 2.33 6.54 -51.93 -0.34 1.99 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.78 8.01 -51.93 -0.42 0.37 16 45 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 397.49 15.07 5.99 5.99 Total: -1.00 -34.84 397.49 -7.93 -42.77 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.39 Total: 1.54 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.25 Total: 3.58 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.15 Total: -57.60 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.10 Total: -12.99 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.84 -7.93 -42.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978829347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.978 kcal (2) G-P(sol) polarization free energy of solvation -34.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds