Wall clock time and date at job start Tue Mar 31 2020 18:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35355 * 117.00051 * 2 1 4 4 C 1.38991 * 126.40945 * 89.65977 * 3 2 1 5 5 C 1.46922 * 126.49502 * 359.97438 * 4 3 2 6 6 O 1.21669 * 120.00094 * 89.99647 * 5 4 3 7 7 N 1.34778 * 120.00051 * 270.00557 * 5 4 3 8 8 C 1.46499 * 119.99995 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.47101 * 179.97438 * 8 7 5 10 10 H 1.08997 * 115.49524 * 29.61283 * 9 8 7 11 11 C 1.52999 * 117.43929 * 244.24091 * 9 8 7 12 12 H 1.08997 * 119.54516 * 4.11405 * 11 9 8 13 13 C 1.54388 * 118.12122 * 160.81192 * 11 9 8 14 14 N 1.48140 * 104.61986 * 87.18838 * 13 11 9 15 15 C 1.36939 * 127.84258 * 140.43847 * 14 13 11 16 16 H 1.07998 * 120.00267 * 195.63701 * 15 14 13 17 17 C 1.38819 * 119.99533 * 15.63563 * 15 14 13 18 18 N 1.31613 * 119.99918 * 9.67335 * 17 15 14 19 19 Si 1.86801 * 119.99657 * 189.67711 * 17 15 14 20 20 H 1.48500 * 109.47383 * 59.99985 * 19 17 15 21 21 H 1.48504 * 109.47061 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47138 * 299.99637 * 19 17 15 23 23 C 1.48150 * 104.32506 * 320.41268 * 14 13 11 24 24 C 1.52998 * 117.44197 * 175.00133 * 9 8 7 25 25 H 1.09003 * 119.53851 * 355.87984 * 24 9 8 26 26 C 1.41457 * 107.00879 * 180.24058 * 4 3 2 27 27 C 1.50702 * 125.93230 * 179.73597 * 26 4 3 28 28 N 1.30317 * 108.13803 * 359.55769 * 26 4 3 29 29 N 1.34664 * 126.40015 * 269.63605 * 3 2 1 30 30 C 1.46495 * 125.74515 * 0.05112 * 29 3 2 31 31 H 1.08988 * 109.47268 * 184.88807 * 1 2 3 32 32 H 1.09007 * 109.47059 * 304.89550 * 1 2 3 33 33 H 1.09003 * 109.47302 * 64.88749 * 1 2 3 34 34 H 0.96999 * 120.00118 * 359.97438 * 7 5 4 35 35 H 1.09006 * 109.47435 * 59.99549 * 8 7 5 36 36 H 1.09000 * 109.47118 * 299.99318 * 8 7 5 37 37 H 1.09000 * 110.40850 * 205.97201 * 13 11 9 38 38 H 1.08997 * 110.40577 * 328.28103 * 13 11 9 39 39 H 0.97008 * 119.99721 * 179.97438 * 18 17 15 40 40 H 1.08999 * 110.40596 * 280.80313 * 23 14 13 41 41 H 1.08996 * 110.40806 * 158.37052 * 23 14 13 42 42 H 1.08998 * 109.46899 * 89.99925 * 27 26 4 43 43 H 1.09000 * 109.47003 * 209.99774 * 27 26 4 44 44 H 1.09005 * 109.46864 * 330.00075 * 27 26 4 45 45 H 1.09000 * 109.47008 * 84.80849 * 30 29 3 46 46 H 1.09004 * 109.47145 * 204.80700 * 30 29 3 47 47 H 1.08999 * 109.47465 * 324.81584 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.4121 1.9441 1.1186 5 6 2.2082 1.5633 2.5229 6 8 3.0623 0.9269 3.1108 7 7 1.0748 1.9188 3.1597 8 6 0.8716 1.5396 4.5601 9 6 -0.4841 2.0631 5.0387 10 1 -1.2523 2.1475 4.2702 11 6 -0.4814 3.1133 6.1514 12 1 0.4672 3.5041 6.5193 13 6 -1.7480 3.9754 6.3413 14 7 -2.6079 3.1816 7.2497 15 6 -3.3855 3.6363 8.2810 16 1 -3.7630 2.9438 9.0188 17 6 -3.6885 4.9876 8.3783 18 7 -3.3939 5.8010 7.3865 19 14 -4.5141 5.6511 9.9169 20 1 -3.6475 5.3921 11.0947 21 1 -4.7291 7.1134 9.7719 22 1 -5.8228 4.9755 10.1071 23 6 -2.4362 1.7841 6.7887 24 6 -0.9352 1.6685 6.4464 25 1 -0.3245 0.9830 7.0341 26 6 3.0153 3.1342 0.6487 27 6 3.5667 4.2444 1.5058 28 7 3.0149 3.1022 -0.6541 29 7 2.4125 1.9149 -1.0839 30 6 2.2155 1.5112 -2.4782 31 1 -0.3633 -1.0238 0.0876 32 1 -0.3633 0.5879 0.8429 33 1 -0.3634 0.4361 -0.9305 34 1 0.3939 2.4264 2.6910 35 1 1.6639 1.9709 5.1720 36 1 0.8941 0.4535 4.6493 37 1 -1.4922 4.9311 6.7988 38 1 -2.2466 4.1341 5.3852 39 1 -3.6060 6.7452 7.4543 40 1 -3.0435 1.5989 5.9027 41 1 -2.6996 1.0866 7.5838 42 1 4.6175 4.0499 1.7205 43 1 3.4733 5.1926 0.9765 44 1 3.0079 4.2934 2.4405 45 1 1.2147 1.7976 -2.8015 46 1 2.9559 2.0051 -3.1076 47 1 2.3292 0.4305 -2.5632 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978829347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:35 Heat of formation + Delta-G solvation = 45.660964 kcal Electronic energy + Delta-G solvation = -28564.569507 eV Core-core repulsion = 24557.814443 eV Total energy + Delta-G solvation = -4006.755064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.69039 -40.73338 -39.94307 -39.31516 -36.30563 -35.09221 -34.86739 -32.73173 -31.38043 -30.46325 -29.08967 -28.81768 -28.10966 -26.98158 -26.20192 -23.47495 -22.70823 -21.83817 -21.57294 -20.89927 -20.72783 -19.11011 -18.80901 -17.94195 -17.67248 -17.14772 -16.98421 -16.76264 -16.04845 -15.95302 -15.74670 -15.45434 -15.24255 -14.85010 -14.59130 -14.46170 -14.39993 -14.28808 -13.98235 -13.70428 -13.34503 -13.32704 -13.16748 -13.10423 -12.88634 -12.73173 -12.68173 -12.38062 -12.34668 -11.96365 -11.93527 -11.73143 -11.35038 -11.22154 -10.91232 -10.64706 -10.55554 -10.30054 -10.05745 -9.72646 -8.88833 -7.90690 -5.26214 0.26393 1.06414 1.24644 1.47076 1.47430 1.50203 1.56579 2.15199 2.43348 2.49552 2.78242 3.27299 3.34856 3.62796 3.72595 3.85132 3.87589 4.00670 4.18194 4.22584 4.25832 4.27870 4.30107 4.32113 4.40531 4.46422 4.58460 4.59493 4.65462 4.71336 4.71940 4.75595 4.79994 4.94114 4.95812 5.04399 5.10549 5.21406 5.38015 5.42364 5.44738 5.46914 5.56055 5.68754 6.19760 6.21907 6.43176 6.49243 7.02860 7.16882 7.70137 8.48438 9.22895 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019011 B = 0.002266 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.450475 B =12354.045915 C =12650.501609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.319 6.319 3 C 0.297 3.703 4 C -0.315 4.315 5 C 0.608 3.392 6 O -0.576 6.576 7 N -0.704 5.704 8 C 0.163 3.837 9 C -0.108 4.108 10 H 0.109 0.891 11 C -0.178 4.178 12 H 0.111 0.889 13 C 0.190 3.810 14 N -0.621 5.621 15 C -0.242 4.242 16 H 0.080 0.920 17 C -0.062 4.062 18 N -0.946 5.946 19 Si 0.978 3.022 20 H -0.278 1.278 21 H -0.294 1.294 22 H -0.275 1.275 23 C 0.149 3.851 24 C -0.157 4.157 25 H 0.127 0.873 26 C 0.118 3.882 27 C -0.079 4.079 28 N -0.294 5.294 29 N -0.364 5.364 30 C 0.084 3.916 31 H 0.128 0.872 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.411 0.589 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.003 0.997 39 H 0.250 0.750 40 H 0.027 0.973 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.130 -9.680 -20.687 24.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.123 3.877 4 C -0.331 4.331 5 C 0.394 3.606 6 O -0.455 6.455 7 N -0.355 5.355 8 C 0.039 3.961 9 C -0.127 4.127 10 H 0.127 0.873 11 C -0.198 4.198 12 H 0.129 0.871 13 C 0.064 3.936 14 N -0.345 5.345 15 C -0.371 4.371 16 H 0.097 0.903 17 C -0.256 4.256 18 N -0.594 5.594 19 Si 0.806 3.194 20 H -0.204 1.204 21 H -0.220 1.220 22 H -0.200 1.200 23 C 0.024 3.976 24 C -0.177 4.177 25 H 0.145 0.855 26 C -0.048 4.048 27 C -0.137 4.137 28 N -0.119 5.119 29 N -0.152 5.152 30 C -0.055 4.055 31 H 0.146 0.854 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.248 0.752 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.021 0.979 39 H 0.059 0.941 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.099 0.901 45 H 0.117 0.883 46 H 0.126 0.874 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.910 -9.628 -21.324 25.816 hybrid contribution -1.242 0.456 1.205 1.789 sum 9.669 -9.172 -20.119 24.133 Atomic orbital electron populations 1.23519 0.74710 1.06208 1.02522 1.86012 1.23319 1.20364 1.93189 1.19193 0.96477 0.85523 0.86478 1.19824 1.20425 1.00141 0.92712 1.17141 0.81090 0.77602 0.84798 1.90776 1.44758 1.41356 1.68644 1.45921 1.19949 1.56635 1.12964 1.20760 0.94367 0.99947 0.80976 1.22390 0.97499 1.00909 0.91852 0.87266 1.24058 0.99594 0.92145 1.04008 0.87083 1.20782 0.87180 0.94163 0.91468 1.45527 1.50925 1.02636 1.35421 1.19336 1.24039 0.92648 1.01038 0.90270 1.25716 1.01815 0.97115 1.00943 1.70083 1.53485 1.03736 1.32059 0.85165 0.78498 0.76707 0.79026 1.20433 1.21966 1.20039 1.21287 0.92591 0.86713 0.97036 1.23782 0.97050 0.98940 0.97935 0.85525 1.22515 0.96067 0.94902 0.91325 1.20391 1.01687 0.94209 0.97454 1.77132 1.21339 1.01032 1.12446 1.49087 1.44925 1.13656 1.07575 1.22364 1.05127 1.02828 0.75161 0.85423 0.92609 0.90972 0.75220 0.91519 0.90380 0.93141 0.97877 0.94138 0.95498 0.92453 0.89230 0.88559 0.90073 0.88303 0.87404 0.87793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.13 113.37 1.26 1.54 16 2 O -0.32 -6.20 10.46 -86.45 -0.90 -7.11 16 3 C 0.30 6.55 7.03 84.44 0.59 7.15 16 4 C -0.32 -7.93 5.89 -20.03 -0.12 -8.05 16 5 C 0.61 16.90 7.34 86.52 0.63 17.54 16 6 O -0.58 -20.60 17.11 -4.25 -0.07 -20.68 16 7 N -0.70 -16.21 5.55 -466.83 -2.59 -18.80 16 8 C 0.16 3.99 5.95 86.38 0.51 4.50 16 9 C -0.11 -2.94 5.39 -10.79 -0.06 -3.00 16 10 H 0.11 2.91 8.04 -2.39 -0.02 2.89 16 11 C -0.18 -6.37 6.74 -9.89 -0.07 -6.44 16 12 H 0.11 3.80 8.12 -2.39 -0.02 3.78 16 13 C 0.19 9.07 5.69 86.54 0.49 9.56 16 14 N -0.62 -31.63 3.38 -688.16 -2.32 -33.95 16 15 C -0.24 -13.48 10.35 84.03 0.87 -12.61 16 16 H 0.08 4.22 7.85 -2.91 -0.02 4.20 16 17 C -0.06 -3.50 5.39 84.86 0.46 -3.05 16 18 N -0.95 -56.31 10.89 21.65 0.24 -56.07 16 19 Si 0.98 45.18 29.56 68.60 2.03 47.21 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 C 0.15 5.94 7.04 86.53 0.61 6.55 16 24 C -0.16 -5.07 6.85 -9.89 -0.07 -5.14 16 25 H 0.13 3.60 8.14 -2.39 -0.02 3.58 16 26 C 0.12 2.74 7.26 43.58 0.32 3.05 16 27 C -0.08 -1.44 10.28 71.24 0.73 -0.71 16 28 N -0.29 -6.70 12.48 -46.63 -0.58 -7.28 16 29 N -0.36 -6.98 3.99 -479.80 -1.91 -8.90 16 30 C 0.08 0.77 11.38 127.77 1.45 2.22 16 31 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.41 7.95 8.38 -92.71 -0.78 7.18 16 35 H 0.07 1.76 7.94 -2.38 -0.02 1.74 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 2.77 6.54 -2.39 -0.02 2.76 16 38 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 40 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.08 1.48 8.01 -2.38 -0.02 1.46 16 45 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 47 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -76.88 397.49 1.70 -75.18 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.21 Total: 17.27 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 7.62 Total: 13.13 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -7.18 Total: -125.00 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.98 Total: -27.79 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -76.88 1.70 -75.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978829347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.837 kcal (2) G-P(sol) polarization free energy of solvation -76.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds