Wall clock time and date at job start Tue Mar 31 2020 18:44:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.35836 * 126.45889 * 2 1
4 4 H 0.96991 * 124.91959 * 0.02562 * 3 2 1
5 5 N 1.28458 * 110.16492 * 180.02562 * 3 2 1
6 6 C 1.31936 * 110.21476 * 0.02562 * 5 3 2
7 7 C 1.47522 * 126.46510 * 179.97438 * 6 5 3
8 8 O 1.21584 * 120.00083 * 180.02562 * 7 6 5
9 9 N 1.34777 * 119.99879 * 0.02562 * 7 6 5
10 10 C 1.48109 * 127.84556 * 180.02562 * 9 7 6
11 11 C 1.54318 * 104.71368 * 140.22173 * 10 9 7
12 12 C 1.53004 * 112.07513 * 146.94817 * 11 10 9
13 13 C 1.53764 * 109.07741 * 271.63695 * 11 10 9
14 14 N 1.47209 * 106.39971 * 93.20254 * 13 11 10
15 15 C 1.36940 * 126.69936 * 211.28953 * 14 13 11
16 16 H 1.08000 * 120.00172 * 14.10646 * 15 14 13
17 17 C 1.38807 * 119.99953 * 194.09776 * 15 14 13
18 18 N 1.31614 * 120.00182 * 8.79767 * 17 15 14
19 19 Si 1.86803 * 120.00012 * 188.79573 * 17 15 14
20 20 H 1.48504 * 109.46901 * 93.97906 * 19 17 15
21 21 H 1.48504 * 109.47303 * 213.97584 * 19 17 15
22 22 H 1.48501 * 109.46970 * 333.97827 * 19 17 15
23 23 C 1.47202 * 106.59770 * 31.55653 * 14 13 11
24 24 C 1.54042 * 106.26333 * 328.37373 * 23 14 13
25 25 C 1.52998 * 112.77059 * 141.67187 * 24 23 14
26 26 C 1.48117 * 127.84171 * 359.97438 * 9 7 6
27 27 C 1.35788 * 126.45607 * 180.30107 * 2 1 3
28 28 O 1.36077 * 127.27161 * 0.02562 * 27 2 1
29 29 H 1.08997 * 109.47002 * 89.97519 * 1 2 3
30 30 H 1.08995 * 109.47120 * 209.97526 * 1 2 3
31 31 H 1.09005 * 109.47091 * 329.97324 * 1 2 3
32 32 H 1.09004 * 110.38891 * 21.41485 * 10 9 7
33 33 H 1.09001 * 110.39199 * 259.02872 * 10 9 7
34 34 H 1.08997 * 109.46849 * 182.01282 * 12 11 10
35 35 H 1.08999 * 109.46177 * 302.00598 * 12 11 10
36 36 H 1.08994 * 109.47145 * 62.00976 * 12 11 10
37 37 H 1.09000 * 110.07134 * 333.97015 * 13 11 10
38 38 H 1.08994 * 110.07014 * 212.43408 * 13 11 10
39 39 H 0.97003 * 120.00670 * 180.02562 * 18 17 15
40 40 H 1.09004 * 110.06532 * 87.68554 * 23 14 13
41 41 H 1.08996 * 110.06798 * 209.21199 * 23 14 13
42 42 H 1.08999 * 109.47510 * 301.38142 * 25 24 23
43 43 H 1.09004 * 109.46510 * 61.38403 * 25 24 23
44 44 H 1.09000 * 109.46985 * 181.37313 * 25 24 23
45 45 H 1.08998 * 110.38888 * 338.58705 * 26 9 7
46 46 H 1.08993 * 110.38767 * 100.86485 * 26 9 7
47 47 H 0.96699 * 114.00036 * 270.13333 * 28 27 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3142 1.0925 0.0000
4 1 2.0045 2.0116 0.0004
5 7 3.5472 0.7321 -0.0005
6 6 3.6374 -0.5842 -0.0015
7 6 4.8810 -1.3778 -0.0028
8 8 4.8270 -2.5924 -0.0041
9 7 6.0770 -0.7563 -0.0027
10 6 7.4226 -1.3752 -0.0045
11 6 8.2573 -0.4954 -0.9587
12 6 9.7230 -0.4102 -0.5280
13 6 8.1070 -1.0275 -2.3935
14 7 7.0013 -0.2711 -3.0037
15 6 6.1282 -0.7235 -3.9567
16 1 6.0619 -1.7800 -4.1704
17 6 5.3281 0.1759 -4.6479
18 7 5.5272 1.4702 -4.5157
19 14 3.9689 -0.4507 -5.7657
20 1 2.6902 -0.4971 -5.0119
21 1 3.8249 0.4611 -6.9290
22 1 4.3111 -1.8140 -6.2446
23 6 7.0216 1.0686 -2.3940
24 6 7.5422 0.8805 -0.9565
25 6 8.4692 2.0127 -0.5096
26 6 6.3440 0.7006 -0.0019
27 6 2.3139 -1.0921 -0.0057
28 8 1.9326 -2.3984 -0.0131
29 1 -0.3633 0.0004 -1.0276
30 1 -0.3633 -0.8902 0.5134
31 1 -0.3633 0.8898 0.5143
32 1 7.3699 -2.3975 -0.3790
33 1 7.8495 -1.3586 0.9983
34 1 10.2639 0.2476 -1.2082
35 1 9.7812 -0.0125 0.4852
36 1 10.1677 -1.4050 -0.5541
37 1 7.8674 -2.0907 -2.3750
38 1 9.0276 -0.8607 -2.9527
39 1 4.9679 2.0988 -4.9984
40 1 7.6892 1.7240 -2.9535
41 1 6.0151 1.4865 -2.3758
42 1 9.3203 2.0746 -1.1877
43 1 7.9235 2.9562 -0.5242
44 1 8.8240 1.8139 0.5017
45 1 5.4767 1.2458 -0.3743
46 1 6.6021 1.0387 1.0016
47 1 1.8201 -2.7802 0.8682
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000982261161.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:44:54
Heat of formation + Delta-G solvation = 38.800843 kcal
Electronic energy + Delta-G solvation = -31484.319409 eV
Core-core repulsion = 27477.266868 eV
Total energy + Delta-G solvation = -4007.052541 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 334.179 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.49208 -40.14986 -37.95233 -36.96375 -34.54331 -33.05618 -32.40253 -31.58533
-30.85042 -30.55846 -27.07434 -26.64460 -25.93440 -25.53933 -24.81371 -23.28748
-21.89483 -21.17599 -19.86214 -18.91263 -18.17849 -17.57459 -16.95025 -16.71908
-16.10710 -15.79656 -15.25695 -15.05483 -14.49927 -14.07448 -13.80363 -13.73271
-13.61616 -13.40010 -13.20997 -13.09879 -12.95361 -12.68526 -12.61396 -12.10639
-11.95814 -11.71251 -11.48128 -11.41511 -11.29666 -11.22848 -10.77587 -10.71227
-10.49664 -10.15010 -9.96599 -9.93509 -9.67582 -9.58075 -9.51440 -9.43100
-9.12818 -8.58466 -8.54646 -8.06369 -6.68509 -5.67786 -2.98566 1.80822
2.06938 2.84125 3.40038 3.45004 3.50046 3.53505 3.87127 4.35035
4.57480 4.66504 4.79346 4.88963 5.07204 5.12141 5.30512 5.38098
5.49242 5.53153 5.60241 5.64981 5.70043 5.77413 5.80322 5.82597
5.92800 6.07354 6.08185 6.15844 6.19082 6.22725 6.31550 6.40043
6.46726 6.56683 6.61971 6.68818 6.82502 6.94727 7.02102 7.13989
7.49603 7.67414 7.83724 7.85821 7.94782 8.12128 8.35649 8.71294
9.27599 9.89387 10.61614 11.45843
Molecular weight = 334.18amu
Principal moments of inertia in cm(-1)
A = 0.009389 B = 0.006420 C = 0.004781
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2981.619223 B = 4360.331426 C = 5855.028729
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C -0.017 4.017
3 N -0.376 5.376
4 H 0.447 0.553
5 N -0.231 5.231
6 C -0.011 4.011
7 C 0.629 3.371
8 O -0.537 6.537
9 N -0.592 5.592
10 C 0.125 3.875
11 C -0.089 4.089
12 C -0.122 4.122
13 C 0.144 3.856
14 N -0.588 5.588
15 C -0.214 4.214
16 H 0.072 0.928
17 C -0.005 4.005
18 N -0.917 5.917
19 Si 0.903 3.097
20 H -0.291 1.291
21 H -0.292 1.292
22 H -0.280 1.280
23 C 0.184 3.816
24 C -0.098 4.098
25 C -0.121 4.121
26 C 0.113 3.887
27 C 0.045 3.955
28 O -0.449 6.449
29 H 0.079 0.921
30 H 0.083 0.917
31 H 0.069 0.931
32 H 0.079 0.921
33 H 0.061 0.939
34 H 0.061 0.939
35 H 0.054 0.946
36 H 0.052 0.948
37 H 0.040 0.960
38 H 0.017 0.983
39 H 0.249 0.751
40 H 0.020 0.980
41 H 0.077 0.923
42 H 0.058 0.942
43 H 0.054 0.946
44 H 0.049 0.951
45 H 0.104 0.896
46 H 0.055 0.945
47 H 0.380 0.620
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.335 2.244 14.946 15.477
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.143 4.143
3 N -0.093 5.093
4 H 0.292 0.708
5 N -0.068 5.068
6 C -0.172 4.172
7 C 0.416 3.584
8 O -0.412 6.412
9 N -0.324 5.324
10 C 0.003 3.997
11 C -0.091 4.091
12 C -0.180 4.180
13 C 0.018 3.982
14 N -0.311 5.311
15 C -0.342 4.342
16 H 0.090 0.910
17 C -0.201 4.201
18 N -0.564 5.564
19 Si 0.734 3.266
20 H -0.218 1.218
21 H -0.218 1.218
22 H -0.205 1.205
23 C 0.058 3.942
24 C -0.101 4.101
25 C -0.178 4.178
26 C -0.010 4.010
27 C -0.011 4.011
28 O -0.254 6.254
29 H 0.097 0.903
30 H 0.102 0.898
31 H 0.088 0.912
32 H 0.097 0.903
33 H 0.079 0.921
34 H 0.080 0.920
35 H 0.073 0.927
36 H 0.071 0.929
37 H 0.058 0.942
38 H 0.035 0.965
39 H 0.059 0.941
40 H 0.038 0.962
41 H 0.095 0.905
42 H 0.077 0.923
43 H 0.073 0.927
44 H 0.068 0.932
45 H 0.122 0.878
46 H 0.073 0.927
47 H 0.234 0.766
Dipole moment (debyes) X Y Z Total
from point charges -2.979 2.515 14.141 14.669
hybrid contribution -1.383 -0.444 -0.339 1.492
sum -4.362 2.071 13.802 14.622
Atomic orbital electron populations
1.20245 0.86316 1.03384 1.03485 1.21475 0.95219 0.87592 1.09967
1.43101 1.03070 1.09065 1.54089 0.70780 1.73675 1.00925 1.14225
1.17955 1.22269 0.95073 0.89887 1.10008 1.16166 0.80283 0.85706
0.76224 1.90763 1.86100 1.12629 1.51737 1.48338 1.04489 1.08442
1.71086 1.22327 0.81346 0.97919 0.98134 1.22350 0.94179 0.95423
0.97136 1.21604 0.94308 1.01380 1.00712 1.21374 0.91644 0.95386
0.89839 1.44291 1.31740 1.10361 1.44708 1.18966 1.12778 0.91869
1.10632 0.91047 1.24736 1.00587 0.95387 0.99379 1.69930 1.40633
0.99953 1.45929 0.86221 0.82557 0.77842 0.79998 1.21832 1.21841
1.20499 1.21219 1.00226 0.87569 0.85162 1.22622 0.94130 0.93792
0.99516 1.21581 0.98852 0.97338 1.00073 1.22694 0.99456 0.81010
0.97844 1.17747 0.89106 0.84890 1.09379 1.84955 1.88788 1.19328
1.32287 0.90270 0.89782 0.91213 0.90304 0.92051 0.92030 0.92729
0.92862 0.94155 0.96506 0.94056 0.96209 0.90501 0.92259 0.92742
0.93150 0.87814 0.92670 0.76591
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.69 10.44 36.01 0.38 -0.31 16
2 C -0.02 -0.23 7.27 -81.70 -0.59 -0.82 16
3 N -0.38 -5.10 6.87 33.71 0.23 -4.86 16
4 H 0.45 4.16 8.96 -190.46 -1.71 2.46 16
5 N -0.23 -4.05 9.28 33.45 0.31 -3.74 16
6 C -0.01 -0.21 7.01 -82.69 -0.58 -0.79 16
7 C 0.63 13.69 7.91 -12.48 -0.10 13.60 16
8 O -0.54 -12.83 16.79 3.10 0.05 -12.78 16
9 N -0.59 -11.70 3.31 -170.72 -0.57 -12.27 16
10 C 0.13 2.22 6.06 -2.47 -0.01 2.20 16
11 C -0.09 -1.55 1.08 -152.32 -0.16 -1.72 16
12 C -0.12 -1.65 7.55 37.16 0.28 -1.37 16
13 C 0.14 3.15 6.30 -3.26 -0.02 3.13 16
14 N -0.59 -15.39 3.38 -171.00 -0.58 -15.97 16
15 C -0.21 -6.28 10.29 -15.06 -0.15 -6.43 16
16 H 0.07 2.12 7.84 -52.49 -0.41 1.71 16
17 C 0.00 -0.14 5.39 -17.43 -0.09 -0.23 16
18 N -0.92 -27.30 10.82 55.49 0.60 -26.70 16
19 Si 0.90 23.56 29.56 -169.99 -5.03 18.54 16
20 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16
21 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16
22 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16
23 C 0.18 4.41 4.74 -3.12 -0.01 4.40 16
24 C -0.10 -1.79 1.08 -152.21 -0.16 -1.96 16
25 C -0.12 -1.75 7.59 37.16 0.28 -1.47 16
26 C 0.11 2.03 5.71 -2.49 -0.01 2.02 16
27 C 0.04 0.78 7.28 -39.11 -0.28 0.49 16
28 O -0.45 -7.43 13.19 -22.18 -0.29 -7.73 16
29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
32 H 0.08 1.51 7.16 -51.93 -0.37 1.14 16
33 H 0.06 0.92 7.97 -51.93 -0.41 0.50 16
34 H 0.06 0.83 7.20 -51.93 -0.37 0.46 16
35 H 0.05 0.64 7.21 -51.93 -0.37 0.26 16
36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16
37 H 0.04 0.91 7.38 -51.93 -0.38 0.52 16
38 H 0.02 0.37 7.89 -51.93 -0.41 -0.04 16
39 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16
40 H 0.02 0.52 7.93 -51.93 -0.41 0.10 16
41 H 0.08 2.09 6.00 -51.93 -0.31 1.78 16
42 H 0.06 0.86 7.18 -51.93 -0.37 0.49 16
43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16
44 H 0.05 0.61 7.21 -51.93 -0.37 0.24 16
45 H 0.10 2.04 4.81 -51.93 -0.25 1.79 16
46 H 0.06 0.85 7.96 -51.93 -0.41 0.43 16
47 H 0.38 4.27 9.07 45.56 0.41 4.68 16
LS Contribution 371.01 15.07 5.59 5.59
Total: -1.00 -37.50 371.01 -8.35 -45.85
By element:
Atomic # 1 Polarization: 10.75 SS G_CDS: -7.41 Total: 3.34 kcal
Atomic # 6 Polarization: 12.00 SS G_CDS: -1.26 Total: 10.73 kcal
Atomic # 7 Polarization: -63.54 SS G_CDS: 0.00 Total: -63.54 kcal
Atomic # 8 Polarization: -20.27 SS G_CDS: -0.24 Total: -20.51 kcal
Atomic # 14 Polarization: 23.56 SS G_CDS: -5.03 Total: 18.54 kcal
Total LS contribution 5.59 Total: 5.59 kcal
Total: -37.50 -8.35 -45.85 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000982261161.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.652 kcal
(2) G-P(sol) polarization free energy of solvation -37.498 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.154 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.851 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.801 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds