Wall clock time and date at job start Tue Mar 31 2020 19:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32166 * 119.14675 * 2 1 4 4 C 1.32364 * 120.60666 * 180.27240 * 3 2 1 5 5 C 1.47495 * 120.50882 * 179.69946 * 4 3 2 6 6 O 1.21598 * 120.00122 * 152.18434 * 5 4 3 7 7 N 1.34784 * 120.00253 * 332.19003 * 5 4 3 8 8 C 1.46926 * 120.63179 * 181.59580 * 7 5 4 9 9 C 1.53622 * 108.54263 * 126.36407 * 8 7 5 10 10 C 1.53036 * 109.23849 * 54.85817 * 9 8 7 11 11 N 1.46503 * 109.44761 * 178.49649 * 10 9 8 12 12 C 1.46500 * 120.00387 * 60.05998 * 11 10 9 13 13 C 1.36939 * 119.99982 * 240.05967 * 11 10 9 14 14 H 1.08008 * 120.00115 * 23.18256 * 13 11 10 15 15 C 1.38816 * 120.00303 * 203.17934 * 13 11 10 16 16 N 1.31621 * 119.99653 * 11.88924 * 15 13 11 17 17 Si 1.86796 * 120.00197 * 191.88240 * 15 13 11 18 18 H 1.48502 * 109.47339 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46868 * 120.00358 * 17 15 13 20 20 H 1.48499 * 109.47088 * 240.00058 * 17 15 13 21 21 C 1.53038 * 109.54128 * 298.50783 * 10 9 8 22 22 C 1.46927 * 120.62822 * 1.87468 * 7 5 4 23 23 C 1.46672 * 118.98157 * 359.72405 * 4 3 2 24 24 O 1.21854 * 120.78646 * 180.02562 * 23 4 3 25 25 N 1.35158 * 118.42873 * 359.97438 * 23 4 3 26 26 H 0.97008 * 120.36429 * 179.97438 * 25 23 4 27 27 C 1.34889 * 119.26577 * 359.97438 * 25 23 4 28 28 C 1.50703 * 119.50046 * 179.97438 * 27 25 23 29 29 H 1.09003 * 109.46955 * 270.28840 * 1 2 3 30 30 H 1.09002 * 109.47239 * 30.28057 * 1 2 3 31 31 H 1.08998 * 109.47749 * 150.28176 * 1 2 3 32 32 H 1.08997 * 109.58519 * 246.20534 * 8 7 5 33 33 H 1.09000 * 109.58437 * 6.62709 * 8 7 5 34 34 H 1.08994 * 109.63555 * 294.86782 * 9 8 7 35 35 H 1.09006 * 109.43105 * 174.72268 * 9 8 7 36 36 H 1.08997 * 109.46392 * 58.53371 * 10 9 8 37 37 H 1.08998 * 109.46936 * 86.92814 * 12 11 10 38 38 H 1.08991 * 109.47411 * 206.93498 * 12 11 10 39 39 H 1.08998 * 109.46547 * 326.93448 * 12 11 10 40 40 H 0.97001 * 119.99650 * 180.02562 * 16 15 13 41 41 H 1.09007 * 109.49874 * 301.41540 * 21 10 9 42 42 H 1.08999 * 109.52862 * 181.33599 * 21 10 9 43 43 H 1.08998 * 109.58561 * 353.37112 * 22 7 5 44 44 H 1.08999 * 109.58409 * 113.65868 * 22 7 5 45 45 H 1.09001 * 109.46875 * 0.02562 * 28 27 25 46 46 H 1.08994 * 109.47527 * 240.00153 * 28 27 25 47 47 H 1.09004 * 109.46954 * 120.00262 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1543 0.0000 4 6 3.4739 1.1880 -0.0054 5 6 4.1900 2.4774 -0.0121 6 8 5.3014 2.5582 0.4746 7 7 3.6125 3.5663 -0.5575 8 6 4.3272 4.8493 -0.6029 9 6 4.3337 5.3538 -2.0539 10 6 2.8951 5.4174 -2.5721 11 7 2.8931 5.9321 -3.9437 12 6 3.6163 5.2146 -4.9965 13 6 2.2151 7.0840 -4.2418 14 1 2.0057 7.8039 -3.4644 15 6 1.7971 7.3264 -5.5431 16 7 1.8391 6.3623 -6.4382 17 14 1.1748 9.0208 -6.0238 18 1 1.2280 9.9209 -4.8439 19 1 2.0286 9.5730 -7.1061 20 1 -0.2265 8.9156 -6.5039 21 6 2.2816 4.0155 -2.5528 22 6 2.2540 3.4944 -1.1125 23 6 4.2170 -0.0765 -0.0053 24 8 5.4355 -0.0838 -0.0097 25 7 3.5183 -1.2334 0.0010 26 1 3.9813 -2.0859 0.0009 27 6 2.1702 -1.1896 0.0073 28 6 1.3858 -2.4764 0.0137 29 1 -0.3633 0.0052 1.0277 30 1 -0.3634 0.8875 -0.5182 31 1 -0.3634 -0.8924 -0.5094 32 1 3.8207 5.5725 0.0362 33 1 5.3519 4.7090 -0.2588 34 1 4.9146 4.6728 -2.6759 35 1 4.7777 6.3486 -2.0899 36 1 2.3086 6.0793 -1.9351 37 1 2.9689 4.4499 -5.4256 38 1 3.9152 5.9164 -5.7751 39 1 4.5028 4.7436 -4.5720 40 1 1.5473 6.5319 -7.3476 41 1 2.8819 3.3471 -3.1701 42 1 1.2651 4.0572 -2.9441 43 1 1.9104 2.4600 -1.1047 44 1 1.5814 4.1075 -0.5127 45 1 2.0742 -3.3215 0.0126 46 1 0.7537 -2.5211 -0.8731 47 1 0.7622 -2.5173 0.9068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985492111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:26 Heat of formation + Delta-G solvation = 11.330530 kcal Electronic energy + Delta-G solvation = -29810.525864 eV Core-core repulsion = 25802.282121 eV Total energy + Delta-G solvation = -4008.243743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.07926 -39.70515 -38.27369 -37.27899 -35.84795 -34.90397 -33.46668 -32.05514 -30.68030 -29.82342 -29.29889 -27.14273 -25.93817 -25.12870 -24.74498 -23.49126 -22.50502 -21.88841 -20.23051 -19.13768 -18.80089 -18.06918 -16.93816 -16.69005 -16.51656 -15.91189 -15.74148 -14.99555 -14.87149 -14.42643 -14.41622 -13.98937 -13.82310 -13.63999 -13.57688 -13.45391 -13.26962 -13.07961 -12.84741 -12.48395 -12.36707 -12.15134 -12.03919 -11.68064 -11.61448 -11.48195 -11.12053 -10.87379 -10.73489 -10.67974 -10.28533 -10.19992 -10.13967 -10.01597 -9.82087 -9.57884 -9.14103 -8.49959 -8.40671 -8.19141 -6.67909 -5.69207 -3.12949 -0.12016 1.36560 2.06731 2.61073 3.09075 3.39958 3.40274 3.47399 3.49314 3.68261 3.87920 3.95778 4.27712 4.52578 4.67814 4.71496 4.88367 5.10416 5.12908 5.30295 5.33293 5.39696 5.43757 5.51801 5.62771 5.64394 5.74467 5.83858 5.89347 6.00112 6.04993 6.06921 6.26795 6.35806 6.40970 6.53072 6.61691 6.76508 6.92103 7.07998 7.11343 7.20225 7.46468 7.47118 7.62719 7.75752 7.85749 8.32550 8.46467 9.29201 9.93155 10.43427 11.37068 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016809 B = 0.003023 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.415126 B = 9260.076685 C =10091.904575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.034 4.034 3 N -0.341 5.341 4 C 0.014 3.986 5 C 0.582 3.418 6 O -0.522 6.522 7 N -0.585 5.585 8 C 0.116 3.884 9 C -0.146 4.146 10 C 0.178 3.822 11 N -0.596 5.596 12 C 0.164 3.836 13 C -0.250 4.250 14 H 0.068 0.932 15 C -0.001 4.001 16 N -0.908 5.908 17 Si 0.903 3.097 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.146 4.146 22 C 0.090 3.910 23 C 0.499 3.501 24 O -0.489 6.489 25 N -0.586 5.586 26 H 0.421 0.579 27 C 0.151 3.849 28 C -0.127 4.127 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.015 0.985 38 H 0.054 0.946 39 H -0.006 1.006 40 H 0.251 0.749 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.114 0.886 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.614 -19.424 14.363 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.159 4.159 3 N -0.059 5.059 4 C -0.154 4.154 5 C 0.367 3.633 6 O -0.397 6.397 7 N -0.317 5.317 8 C -0.007 4.007 9 C -0.186 4.186 10 C 0.070 3.930 11 N -0.318 5.318 12 C 0.019 3.981 13 C -0.380 4.380 14 H 0.086 0.914 15 C -0.198 4.198 16 N -0.554 5.554 17 Si 0.734 3.266 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.218 1.218 21 C -0.186 4.186 22 C -0.032 4.032 23 C 0.291 3.709 24 O -0.361 6.361 25 N -0.222 5.222 26 H 0.261 0.739 27 C 0.035 3.965 28 C -0.184 4.184 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.034 0.966 38 H 0.073 0.927 39 H 0.013 0.987 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.131 0.869 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.121 0.879 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.836 -18.553 14.423 23.811 hybrid contribution 0.121 -0.339 -0.582 0.684 sum -3.715 -18.891 13.841 23.712 Atomic orbital electron populations 1.20556 0.86739 1.04039 1.03092 1.20276 0.98110 0.85736 1.11803 1.67726 1.08223 1.28361 1.01564 1.23919 0.88925 0.93943 1.08591 1.17040 0.84838 0.81870 0.79524 1.90834 1.18669 1.84017 1.46166 1.47967 1.17260 1.09188 1.57331 1.21811 0.97825 0.83000 0.98015 1.22539 1.00761 1.01316 0.93988 1.20318 0.92478 0.92432 0.87783 1.43968 1.57908 1.26895 1.02981 1.20718 0.91219 0.95678 0.90463 1.19297 1.29585 0.94898 0.94210 0.91419 1.25015 0.99785 0.97579 0.97459 1.70089 1.51677 1.30229 1.03399 0.86198 0.78077 0.84124 0.78229 1.20344 1.21746 1.21825 1.22510 1.02340 0.99368 0.94383 1.22584 0.81589 1.04472 0.94592 1.19010 0.88362 0.83914 0.79607 1.91047 1.11512 1.85373 1.48134 1.43723 1.06388 1.11920 1.60130 0.73879 1.21517 0.83458 0.98976 0.92518 1.21205 1.00487 0.91346 1.05403 0.90698 0.89837 0.90676 0.91332 0.89462 0.91990 0.90782 0.91886 0.96638 0.92685 0.98729 0.93921 0.92631 0.90715 0.86881 0.91360 0.90376 0.87923 0.88143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.46 9.66 36.00 0.35 -0.11 16 2 C -0.03 -0.29 6.70 -83.18 -0.56 -0.85 16 3 N -0.34 -4.17 6.66 -4.85 -0.03 -4.20 16 4 C 0.01 0.21 6.52 -80.46 -0.52 -0.32 16 5 C 0.58 10.38 7.52 -12.48 -0.09 10.29 16 6 O -0.52 -10.92 15.38 -12.17 -0.19 -11.10 16 7 N -0.58 -9.70 2.97 -173.74 -0.52 -10.22 16 8 C 0.12 1.88 6.46 -3.49 -0.02 1.86 16 9 C -0.15 -2.67 5.32 -26.39 -0.14 -2.81 16 10 C 0.18 3.64 2.55 -67.89 -0.17 3.46 16 11 N -0.60 -14.93 2.81 -173.44 -0.49 -15.42 16 12 C 0.16 4.14 8.09 59.85 0.48 4.62 16 13 C -0.25 -6.84 9.59 -15.06 -0.14 -6.99 16 14 H 0.07 1.81 7.82 -52.48 -0.41 1.40 16 15 C 0.00 -0.02 5.07 -17.43 -0.09 -0.10 16 16 N -0.91 -26.53 10.71 55.49 0.59 -25.94 16 17 Si 0.90 21.86 29.57 -169.99 -5.03 16.84 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 C -0.15 -2.68 5.34 -26.61 -0.14 -2.82 16 22 C 0.09 1.38 6.01 -3.71 -0.02 1.36 16 23 C 0.50 7.06 7.90 -12.68 -0.10 6.96 16 24 O -0.49 -8.85 16.75 -12.40 -0.21 -9.06 16 25 N -0.59 -4.94 5.29 -9.45 -0.05 -4.99 16 26 H 0.42 2.25 8.64 -40.82 -0.35 1.90 16 27 C 0.15 0.96 6.78 -81.98 -0.56 0.41 16 28 C -0.13 -0.20 8.84 36.01 0.32 0.11 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.21 6.42 -51.93 -0.33 -0.13 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.46 7.01 -51.93 -0.36 1.09 16 34 H 0.06 1.22 6.74 -51.93 -0.35 0.87 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.06 1.28 7.86 -51.93 -0.41 0.88 16 37 H 0.02 0.41 7.79 -51.93 -0.40 0.01 16 38 H 0.05 1.51 6.76 -51.93 -0.35 1.16 16 39 H -0.01 -0.13 6.47 -51.93 -0.34 -0.47 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.05 1.10 7.72 -51.93 -0.40 0.70 16 42 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.11 1.62 4.16 -63.84 -0.27 1.35 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.08 0.02 7.90 -51.93 -0.41 -0.39 16 46 H 0.10 0.07 7.35 -51.93 -0.38 -0.31 16 47 H 0.10 0.04 8.10 -51.93 -0.42 -0.38 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -36.84 371.70 -8.59 -45.42 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.86 Total: -2.01 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: -1.42 Total: 15.08 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.49 Total: -60.77 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.39 Total: -20.16 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.84 -8.59 -45.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985492111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.753 kcal (2) G-P(sol) polarization free energy of solvation -36.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds