Wall clock time and date at job start Tue Mar 31 2020 18:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.35840 * 126.46190 * 2 1 4 4 H 0.97001 * 124.91468 * 0.02562 * 3 2 1 5 5 N 1.28457 * 110.16673 * 179.75115 * 3 2 1 6 6 C 1.31927 * 110.21468 * 0.44795 * 5 3 2 7 7 C 1.47523 * 126.46365 * 179.81737 * 6 5 3 8 8 O 1.21598 * 120.00133 * 179.68979 * 7 6 5 9 9 N 1.34774 * 120.00025 * 359.70087 * 7 6 5 10 10 C 1.47741 * 125.94158 * 0.03534 * 9 7 6 11 11 C 1.55439 * 106.78830 * 181.00178 * 10 9 7 12 12 H 1.09006 * 112.49705 * 213.91935 * 11 10 9 13 13 C 1.52993 * 106.45966 * 90.00488 * 11 10 9 14 14 C 1.52600 * 111.00808 * 197.01612 * 13 11 10 15 15 C 1.53312 * 108.45451 * 62.30471 * 14 13 11 16 16 C 1.52026 * 107.95575 * 296.17825 * 15 14 13 17 17 H 1.08997 * 108.49165 * 179.84101 * 16 15 14 18 18 N 1.46501 * 109.12914 * 298.44936 * 16 15 14 19 19 C 1.36940 * 120.00067 * 277.77099 * 18 16 15 20 20 H 1.08004 * 119.99594 * 0.02562 * 19 18 16 21 21 C 1.38806 * 120.00363 * 180.02562 * 19 18 16 22 22 N 1.31614 * 120.00584 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99792 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47179 * 89.99739 * 23 21 19 25 25 H 1.48501 * 109.47038 * 210.00106 * 23 21 19 26 26 H 1.48495 * 109.47017 * 329.99894 * 23 21 19 27 27 C 1.50848 * 112.11977 * 59.36008 * 16 15 14 28 28 H 1.08997 * 109.65695 * 184.97189 * 27 16 15 29 29 C 1.47938 * 125.74723 * 179.97438 * 9 7 6 30 30 C 1.35784 * 126.46025 * 180.02562 * 2 1 3 31 31 O 1.36082 * 127.26562 * 359.97438 * 30 2 1 32 32 H 1.09004 * 109.47040 * 269.97873 * 1 2 3 33 33 H 1.08999 * 109.47466 * 29.97935 * 1 2 3 34 34 H 1.08999 * 109.47257 * 149.97577 * 1 2 3 35 35 H 1.09002 * 109.97832 * 61.66696 * 10 9 7 36 36 H 1.09001 * 110.02985 * 300.35498 * 10 9 7 37 37 H 1.09002 * 109.16550 * 317.41142 * 13 11 10 38 38 H 1.09002 * 109.16993 * 76.67200 * 13 11 10 39 39 H 1.08997 * 109.63658 * 181.98910 * 14 13 11 40 40 H 1.09001 * 109.64223 * 302.40091 * 14 13 11 41 41 H 1.09000 * 109.72678 * 55.82104 * 15 14 13 42 42 H 1.08994 * 109.72658 * 176.44552 * 15 14 13 43 43 H 0.96997 * 120.00209 * 97.77315 * 18 16 15 44 44 H 0.96995 * 120.00844 * 180.02562 * 22 21 19 45 45 H 1.09002 * 110.57204 * 85.92432 * 29 9 7 46 46 H 1.09003 * 110.56891 * 323.20181 * 29 9 7 47 47 H 0.96695 * 114.00347 * 269.99934 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0044 2.0117 0.0004 5 7 3.5472 0.7321 0.0052 6 6 3.6374 -0.5841 -0.0007 7 6 4.8810 -1.3777 -0.0013 8 8 4.8271 -2.5924 -0.0015 9 7 6.0769 -0.7562 -0.0015 10 6 6.2949 0.7050 -0.0004 11 6 7.8327 0.9295 -0.0271 12 1 8.1348 1.8148 0.5326 13 6 8.2354 0.9973 -1.5016 14 6 9.7389 0.7964 -1.6679 15 6 10.1006 -0.6039 -1.1593 16 6 9.7947 -0.6555 0.3290 17 1 10.0462 -1.6493 0.6993 18 7 10.6210 0.3349 1.0236 19 6 11.9159 0.0357 1.3538 20 1 12.3280 -0.9303 1.1018 21 6 12.6987 0.9738 2.0125 22 7 13.9434 0.6865 2.3294 23 14 11.9856 2.6443 2.4489 24 1 11.3660 2.5811 3.7969 25 1 13.0688 3.6602 2.4491 26 1 10.9552 3.0196 1.4477 27 6 8.3414 -0.3751 0.6202 28 1 8.1845 -0.3349 1.6980 29 6 7.3974 -1.4232 -0.0016 30 6 2.3138 -1.0921 -0.0005 31 8 1.9325 -2.3984 -0.0006 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3634 0.8901 -0.5135 34 1 -0.3634 -0.8898 -0.5142 35 1 5.8695 1.1443 0.9019 36 1 5.8376 1.1514 -0.8834 37 1 7.7071 0.2195 -2.0529 38 1 7.9585 1.9719 -1.9038 39 1 10.0059 0.8839 -2.7210 40 1 10.2753 1.5493 -1.0903 41 1 9.5059 -1.3512 -1.6847 42 1 11.1608 -0.7936 -1.3265 43 1 10.2510 1.2025 1.2496 44 1 14.4903 1.3419 2.7900 45 1 7.7065 -1.6607 -1.0195 46 1 7.3709 -2.3252 0.6098 47 1 1.8226 -2.7761 0.8827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992702782.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:56 Heat of formation + Delta-G solvation = 15.047988 kcal Electronic energy + Delta-G solvation = -29729.762697 eV Core-core repulsion = 25721.680155 eV Total energy + Delta-G solvation = -4008.082542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.02272 -40.48208 -38.52317 -37.42494 -35.62298 -33.46878 -33.03495 -31.59094 -31.43408 -30.38674 -29.73601 -27.32547 -26.67591 -25.35454 -23.59707 -22.19757 -21.96902 -21.66626 -20.97991 -19.21478 -18.54216 -18.16079 -17.61500 -17.41002 -16.78062 -16.27391 -15.86999 -15.45965 -14.77446 -14.52905 -14.52496 -14.19795 -14.04506 -13.94953 -13.61206 -13.41806 -13.13887 -13.04007 -12.90360 -12.70804 -12.42943 -12.05478 -11.98009 -11.62963 -11.48332 -11.19405 -11.07935 -10.91060 -10.69038 -10.64848 -10.25858 -10.11391 -9.99318 -9.80612 -9.67573 -9.56322 -9.51101 -9.07246 -8.86078 -8.53705 -7.24170 -5.74869 -3.09774 1.25563 1.54192 2.34193 2.90689 3.26106 3.36575 3.39200 3.45408 3.86883 4.21222 4.33395 4.48323 4.59894 4.61587 4.74003 4.94195 4.96487 5.04265 5.27280 5.28482 5.37297 5.39913 5.52474 5.54069 5.59425 5.64012 5.70693 5.76980 5.84356 5.86249 5.97143 6.03998 6.07826 6.10342 6.31473 6.33117 6.37902 6.42296 6.54115 6.75909 6.80459 6.94600 7.03761 7.36548 7.42508 7.53213 8.02136 8.15180 8.44283 9.23062 9.95411 10.15758 11.43732 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.002832 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.537389 B = 9883.132280 C =10265.619836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.013 4.013 3 N -0.376 5.376 4 H 0.450 0.550 5 N -0.237 5.237 6 C -0.022 4.022 7 C 0.612 3.388 8 O -0.528 6.528 9 N -0.604 5.604 10 C 0.112 3.888 11 C -0.093 4.093 12 H 0.095 0.905 13 C -0.109 4.109 14 C -0.113 4.113 15 C -0.134 4.134 16 C 0.194 3.806 17 H 0.055 0.945 18 N -0.744 5.744 19 C -0.237 4.237 20 H 0.090 0.910 21 C 0.004 3.996 22 N -0.935 5.935 23 Si 0.881 3.119 24 H -0.286 1.286 25 H -0.293 1.293 26 H -0.277 1.277 27 C -0.099 4.099 28 H 0.082 0.918 29 C 0.116 3.884 30 C 0.046 3.954 31 O -0.452 6.452 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.360 0.640 44 H 0.258 0.742 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.406 2.257 -5.901 29.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.139 4.139 3 N -0.094 5.094 4 H 0.295 0.705 5 N -0.075 5.075 6 C -0.184 4.184 7 C 0.399 3.601 8 O -0.403 6.403 9 N -0.338 5.338 10 C -0.011 4.011 11 C -0.112 4.112 12 H 0.113 0.887 13 C -0.147 4.147 14 C -0.151 4.151 15 C -0.174 4.174 16 C 0.084 3.916 17 H 0.073 0.927 18 N -0.387 5.387 19 C -0.367 4.367 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.583 5.583 23 Si 0.712 3.288 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.203 1.203 27 C -0.119 4.119 28 H 0.100 0.900 29 C -0.006 4.006 30 C -0.010 4.010 31 O -0.257 6.257 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.193 0.807 44 H 0.069 0.931 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -27.607 2.364 -6.469 28.454 hybrid contribution -1.019 1.197 0.880 1.801 sum -28.626 3.561 -5.589 29.383 Atomic orbital electron populations 1.20312 0.85983 1.04255 1.03377 1.21565 0.95424 0.87420 1.09445 1.43131 1.02977 1.09271 1.53975 0.70509 1.73775 1.01278 1.14205 1.18217 1.22352 0.95251 0.89969 1.10794 1.16359 0.80541 0.85969 0.77264 1.90828 1.86082 1.12416 1.50929 1.48563 1.05205 1.08316 1.71700 1.22563 0.96464 0.79934 1.02109 1.22338 0.92605 0.98923 0.97322 0.88653 1.21536 0.97459 1.00993 0.94667 1.21407 0.94634 0.99076 0.99965 1.22034 1.01555 0.95766 0.98058 1.19323 0.86857 0.94037 0.91358 0.92738 1.42757 1.11712 1.14261 1.69981 1.19070 0.86374 1.00949 1.30335 0.89174 1.24644 0.95776 0.97834 1.00931 1.69690 1.07190 1.35160 1.46292 0.86598 0.78139 0.85684 0.78393 1.21234 1.21908 1.20285 1.21929 0.95737 0.93755 1.00474 0.89951 1.22323 0.80330 0.96297 1.01696 1.17770 0.88967 0.85124 1.09129 1.84884 1.88713 1.19179 1.32956 0.90255 0.90900 0.89236 0.91327 0.90885 0.92319 0.92599 0.93161 0.90819 0.93298 0.91255 0.80710 0.93141 0.90547 0.90134 0.75803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.44 36.00 0.38 0.06 16 2 C -0.01 -0.10 7.27 -81.70 -0.59 -0.69 16 3 N -0.38 -2.73 6.87 33.71 0.23 -2.50 16 4 H 0.45 1.47 8.96 -190.45 -1.71 -0.23 16 5 N -0.24 -2.57 9.79 33.45 0.33 -2.25 16 6 C -0.02 -0.29 6.98 -82.69 -0.58 -0.87 16 7 C 0.61 9.54 7.86 -12.48 -0.10 9.44 16 8 O -0.53 -9.64 16.80 3.10 0.05 -9.59 16 9 N -0.60 -8.65 3.35 -170.52 -0.57 -9.22 16 10 C 0.11 1.41 4.85 -2.07 -0.01 1.40 16 11 C -0.09 -1.27 3.27 -88.67 -0.29 -1.56 16 12 H 0.10 1.34 7.91 -51.93 -0.41 0.93 16 13 C -0.11 -1.45 4.60 -26.94 -0.12 -1.58 16 14 C -0.11 -1.77 5.84 -26.77 -0.16 -1.92 16 15 C -0.13 -2.25 5.39 -27.07 -0.15 -2.40 16 16 C 0.19 3.53 2.47 -69.51 -0.17 3.36 16 17 H 0.05 1.05 8.07 -51.93 -0.42 0.63 16 18 N -0.74 -16.60 3.96 -54.97 -0.22 -16.82 16 19 C -0.24 -6.46 10.36 -15.06 -0.16 -6.62 16 20 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 21 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 22 N -0.94 -29.09 13.97 55.49 0.78 -28.32 16 23 Si 0.88 21.67 27.74 -169.99 -4.71 16.96 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 27 C -0.10 -1.52 2.45 -90.44 -0.22 -1.74 16 28 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 29 C 0.12 1.68 5.80 -2.66 -0.02 1.67 16 30 C 0.05 0.52 7.28 -39.11 -0.28 0.23 16 31 O -0.45 -4.97 13.19 -22.18 -0.29 -5.27 16 32 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.84 7.79 -51.93 -0.40 0.44 16 36 H 0.07 0.88 7.32 -51.93 -0.38 0.50 16 37 H 0.06 0.77 6.93 -51.93 -0.36 0.41 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.34 7.40 -51.93 -0.38 0.95 16 41 H 0.05 0.72 6.70 -51.93 -0.35 0.38 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.36 7.92 5.09 -40.82 -0.21 7.71 16 44 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 45 H 0.08 1.09 5.78 -51.93 -0.30 0.79 16 46 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 47 H 0.39 2.65 9.07 45.56 0.41 3.06 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -35.53 369.20 -8.89 -44.42 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -7.48 Total: 8.24 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -2.57 Total: -1.22 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.54 Total: -59.11 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.24 Total: -14.85 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.96 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.53 -8.89 -44.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992702782.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.467 kcal (2) G-P(sol) polarization free energy of solvation -35.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds