Wall clock time and date at job start Tue Mar 31 2020 18:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.35840 * 126.46190 * 2 1 4 4 H 0.97001 * 124.91468 * 0.02562 * 3 2 1 5 5 N 1.28457 * 110.16673 * 179.75115 * 3 2 1 6 6 C 1.31927 * 110.21468 * 0.44795 * 5 3 2 7 7 C 1.47523 * 126.46365 * 179.81737 * 6 5 3 8 8 O 1.21598 * 120.00133 * 179.68979 * 7 6 5 9 9 N 1.34774 * 120.00025 * 359.70087 * 7 6 5 10 10 C 1.47741 * 125.94158 * 0.03534 * 9 7 6 11 11 C 1.55439 * 106.78830 * 181.00178 * 10 9 7 12 12 H 1.09006 * 112.49705 * 213.91935 * 11 10 9 13 13 C 1.52993 * 106.45966 * 90.00488 * 11 10 9 14 14 C 1.52600 * 111.00808 * 197.01612 * 13 11 10 15 15 C 1.53312 * 108.45451 * 62.30471 * 14 13 11 16 16 C 1.52026 * 107.95575 * 296.17825 * 15 14 13 17 17 H 1.08997 * 108.49165 * 179.84101 * 16 15 14 18 18 N 1.46501 * 109.12914 * 298.44936 * 16 15 14 19 19 C 1.36940 * 120.00067 * 277.77099 * 18 16 15 20 20 H 1.08004 * 119.99594 * 0.02562 * 19 18 16 21 21 C 1.38806 * 120.00363 * 180.02562 * 19 18 16 22 22 N 1.31614 * 120.00584 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99792 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47179 * 89.99739 * 23 21 19 25 25 H 1.48501 * 109.47038 * 210.00106 * 23 21 19 26 26 H 1.48495 * 109.47017 * 329.99894 * 23 21 19 27 27 C 1.50848 * 112.11977 * 59.36008 * 16 15 14 28 28 H 1.08997 * 109.65695 * 184.97189 * 27 16 15 29 29 C 1.47938 * 125.74723 * 179.97438 * 9 7 6 30 30 C 1.35784 * 126.46025 * 180.02562 * 2 1 3 31 31 O 1.36082 * 127.26562 * 359.97438 * 30 2 1 32 32 H 1.09004 * 109.47040 * 269.97873 * 1 2 3 33 33 H 1.08999 * 109.47466 * 29.97935 * 1 2 3 34 34 H 1.08999 * 109.47257 * 149.97577 * 1 2 3 35 35 H 1.09002 * 109.97832 * 61.66696 * 10 9 7 36 36 H 1.09001 * 110.02985 * 300.35498 * 10 9 7 37 37 H 1.09002 * 109.16550 * 317.41142 * 13 11 10 38 38 H 1.09002 * 109.16993 * 76.67200 * 13 11 10 39 39 H 1.08997 * 109.63658 * 181.98910 * 14 13 11 40 40 H 1.09001 * 109.64223 * 302.40091 * 14 13 11 41 41 H 1.09000 * 109.72678 * 55.82104 * 15 14 13 42 42 H 1.08994 * 109.72658 * 176.44552 * 15 14 13 43 43 H 0.96997 * 120.00209 * 97.77315 * 18 16 15 44 44 H 0.96995 * 120.00844 * 180.02562 * 22 21 19 45 45 H 1.09002 * 110.57204 * 85.92432 * 29 9 7 46 46 H 1.09003 * 110.56891 * 323.20181 * 29 9 7 47 47 H 0.96695 * 114.00347 * 269.99934 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0044 2.0117 0.0004 5 7 3.5472 0.7321 0.0052 6 6 3.6374 -0.5841 -0.0007 7 6 4.8810 -1.3777 -0.0013 8 8 4.8271 -2.5924 -0.0015 9 7 6.0769 -0.7562 -0.0015 10 6 6.2949 0.7050 -0.0004 11 6 7.8327 0.9295 -0.0271 12 1 8.1348 1.8148 0.5326 13 6 8.2354 0.9973 -1.5016 14 6 9.7389 0.7964 -1.6679 15 6 10.1006 -0.6039 -1.1593 16 6 9.7947 -0.6555 0.3290 17 1 10.0462 -1.6493 0.6993 18 7 10.6210 0.3349 1.0236 19 6 11.9159 0.0357 1.3538 20 1 12.3280 -0.9303 1.1018 21 6 12.6987 0.9738 2.0125 22 7 13.9434 0.6865 2.3294 23 14 11.9856 2.6443 2.4489 24 1 11.3660 2.5811 3.7969 25 1 13.0688 3.6602 2.4491 26 1 10.9552 3.0196 1.4477 27 6 8.3414 -0.3751 0.6202 28 1 8.1845 -0.3349 1.6980 29 6 7.3974 -1.4232 -0.0016 30 6 2.3138 -1.0921 -0.0005 31 8 1.9325 -2.3984 -0.0006 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3634 0.8901 -0.5135 34 1 -0.3634 -0.8898 -0.5142 35 1 5.8695 1.1443 0.9019 36 1 5.8376 1.1514 -0.8834 37 1 7.7071 0.2195 -2.0529 38 1 7.9585 1.9719 -1.9038 39 1 10.0059 0.8839 -2.7210 40 1 10.2753 1.5493 -1.0903 41 1 9.5059 -1.3512 -1.6847 42 1 11.1608 -0.7936 -1.3265 43 1 10.2510 1.2025 1.2496 44 1 14.4903 1.3419 2.7900 45 1 7.7065 -1.6607 -1.0195 46 1 7.3709 -2.3252 0.6098 47 1 1.8226 -2.7761 0.8827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992702782.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:55 Heat of formation + Delta-G solvation = -12.360556 kcal Electronic energy + Delta-G solvation = -29730.951221 eV Core-core repulsion = 25721.680155 eV Total energy + Delta-G solvation = -4009.271066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.74747 -41.69527 -39.74861 -38.20048 -37.06994 -35.10108 -33.72591 -33.32851 -32.27394 -31.51398 -31.29888 -28.20593 -27.66313 -26.54517 -25.17635 -23.56174 -23.18773 -22.41584 -22.24291 -20.23022 -19.91715 -19.29976 -19.20507 -18.10859 -17.86990 -17.26627 -16.91157 -16.59408 -16.42353 -15.96078 -15.64549 -15.29508 -15.19919 -14.99483 -14.72742 -14.66018 -14.31889 -14.11184 -13.92751 -13.72164 -13.54717 -13.31219 -13.01262 -12.86483 -12.81714 -12.69400 -12.57150 -12.32642 -12.10757 -12.01274 -11.78836 -11.56590 -11.39074 -11.21661 -11.07643 -10.89161 -10.69993 -10.44984 -9.78682 -9.63661 -9.25396 -7.97193 -5.29474 0.38397 0.84603 1.39040 1.43297 1.50453 1.66382 1.96746 2.20682 2.52452 3.02984 3.32055 3.34754 3.45294 3.64764 3.69449 3.76026 3.89267 4.00515 4.15788 4.25601 4.33579 4.36262 4.43190 4.48727 4.60500 4.66069 4.74434 4.76462 4.80721 4.81422 4.86369 4.87849 4.98054 5.05394 5.13560 5.17050 5.23487 5.24591 5.37993 5.45879 5.60524 5.64918 5.83934 6.00673 6.26588 6.39504 6.67831 6.78838 7.03839 7.13598 7.89228 8.10225 9.24810 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.002832 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.537389 B = 9883.132280 C =10265.619836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.012 3.988 3 N -0.353 5.353 4 H 0.469 0.531 5 N -0.241 5.241 6 C -0.056 4.056 7 C 0.607 3.393 8 O -0.568 6.568 9 N -0.604 5.604 10 C 0.123 3.877 11 C -0.090 4.090 12 H 0.100 0.900 13 C -0.101 4.101 14 C -0.110 4.110 15 C -0.130 4.130 16 C 0.192 3.808 17 H 0.035 0.965 18 N -0.742 5.742 19 C -0.219 4.219 20 H 0.053 0.947 21 C -0.068 4.068 22 N -0.988 5.988 23 Si 0.951 3.049 24 H -0.282 1.282 25 H -0.301 1.301 26 H -0.244 1.244 27 C -0.091 4.091 28 H 0.073 0.927 29 C 0.121 3.879 30 C 0.015 3.985 31 O -0.468 6.468 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.039 0.961 43 H 0.366 0.634 44 H 0.255 0.745 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.444 4.974 -6.790 33.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 N -0.074 5.074 4 H 0.319 0.681 5 N -0.080 5.080 6 C -0.215 4.215 7 C 0.395 3.605 8 O -0.446 6.446 9 N -0.337 5.337 10 C 0.001 3.999 11 C -0.109 4.109 12 H 0.118 0.882 13 C -0.139 4.139 14 C -0.148 4.148 15 C -0.170 4.170 16 C 0.084 3.916 17 H 0.053 0.947 18 N -0.386 5.386 19 C -0.350 4.350 20 H 0.072 0.928 21 C -0.258 4.258 22 N -0.640 5.640 23 Si 0.778 3.222 24 H -0.208 1.208 25 H -0.228 1.228 26 H -0.168 1.168 27 C -0.111 4.111 28 H 0.092 0.908 29 C -0.002 4.002 30 C -0.041 4.041 31 O -0.276 6.276 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.200 0.800 44 H 0.064 0.936 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -31.705 5.104 -7.384 32.951 hybrid contribution 0.180 0.248 1.134 1.175 sum -31.526 5.352 -6.250 32.582 Atomic orbital electron populations 1.20489 0.82895 1.05426 1.04926 1.22000 0.96885 0.86134 1.06466 1.43272 1.02005 1.10350 1.51788 0.68144 1.73664 1.02897 1.13022 1.18379 1.22114 0.94829 0.90914 1.13689 1.16764 0.81439 0.85837 0.76446 1.90790 1.86772 1.14164 1.52853 1.48596 1.04715 1.09060 1.71324 1.22552 0.95436 0.78789 1.03156 1.22361 0.93316 0.97728 0.97525 0.88192 1.21490 0.95415 1.02591 0.94381 1.21359 0.96219 0.96850 1.00322 1.21927 1.00128 0.97885 0.97020 1.19452 0.88213 0.92080 0.91846 0.94726 1.42677 1.10286 1.15309 1.70294 1.18986 0.88170 0.99235 1.28597 0.92848 1.25462 0.96159 1.02364 1.01845 1.69886 1.09121 1.36684 1.48266 0.85462 0.77801 0.80054 0.78834 1.20814 1.22784 1.16802 1.21697 0.93620 0.95549 1.00257 0.90821 1.22180 0.80721 0.95675 1.01611 1.18088 0.89047 0.85931 1.10996 1.84832 1.88636 1.19698 1.34413 0.88378 0.88253 0.89513 0.90597 0.89469 0.91740 0.90185 0.91675 0.93181 0.90987 0.94221 0.80039 0.93593 0.90041 0.91261 0.74348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.44 71.23 0.74 0.44 16 2 C 0.01 0.15 7.27 41.37 0.30 0.45 16 3 N -0.35 -3.86 6.87 -47.27 -0.32 -4.19 16 4 H 0.47 1.01 8.96 -220.00 -1.97 -0.96 16 5 N -0.24 -4.56 9.79 -48.08 -0.47 -5.03 16 6 C -0.06 -1.39 6.98 42.45 0.30 -1.09 16 7 C 0.61 18.67 7.86 86.69 0.68 19.35 16 8 O -0.57 -21.17 16.80 -1.94 -0.03 -21.20 16 9 N -0.60 -16.56 3.35 -811.67 -2.72 -19.29 16 10 C 0.12 2.74 4.85 86.98 0.42 3.16 16 11 C -0.09 -2.23 3.27 -9.53 -0.03 -2.26 16 12 H 0.10 2.44 7.91 -2.38 -0.02 2.42 16 13 C -0.10 -2.37 4.60 30.46 0.14 -2.23 16 14 C -0.11 -3.21 5.84 30.57 0.18 -3.03 16 15 C -0.13 -4.32 5.39 30.38 0.16 -4.16 16 16 C 0.19 7.04 2.47 43.97 0.11 7.15 16 17 H 0.03 1.40 8.07 -2.39 -0.02 1.38 16 18 N -0.74 -33.12 3.96 -327.82 -1.30 -34.42 16 19 C -0.22 -12.26 10.36 84.03 0.87 -11.39 16 20 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 21 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 22 N -0.99 -63.70 13.97 21.65 0.30 -63.40 16 23 Si 0.95 44.79 27.74 68.60 1.90 46.69 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 25 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 26 H -0.24 -10.03 6.52 99.48 0.65 -9.39 16 27 C -0.09 -2.72 2.45 -10.68 -0.03 -2.74 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 C 0.12 3.44 5.80 86.49 0.50 3.95 16 30 C 0.02 0.32 7.28 22.57 0.16 0.48 16 31 O -0.47 -10.10 13.19 -92.39 -1.22 -11.32 16 32 H 0.10 0.09 8.14 -2.38 -0.02 0.07 16 33 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.08 1.63 7.79 -2.39 -0.02 1.61 16 36 H 0.09 1.76 7.32 -2.39 -0.02 1.74 16 37 H 0.06 1.47 6.93 -2.39 -0.02 1.46 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.05 1.71 7.40 -2.39 -0.02 1.70 16 41 H 0.07 2.06 6.70 -2.39 -0.02 2.04 16 42 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.37 15.52 5.09 -92.71 -0.47 15.05 16 44 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 45 H 0.08 2.24 5.78 -2.39 -0.01 2.23 16 46 H 0.07 2.13 8.05 -2.39 -0.02 2.11 16 47 H 0.40 5.43 9.07 -74.06 -0.67 4.76 16 Total: -1.00 -80.80 369.20 -1.02 -81.82 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -2.14 Total: 25.73 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 4.98 Total: 4.59 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -4.51 Total: -126.32 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -1.25 Total: -32.52 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.90 Total: 46.69 kcal Total: -80.80 -1.02 -81.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992702782.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.463 kcal (2) G-P(sol) polarization free energy of solvation -80.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds