Wall clock time and date at job start Tue Mar 31 2020 18:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.35838 * 126.45928 * 2 1 4 4 H 0.96997 * 124.91509 * 0.02614 * 3 2 1 5 5 N 1.28460 * 110.15981 * 179.74751 * 3 2 1 6 6 C 1.31931 * 110.21588 * 0.46208 * 5 3 2 7 7 C 1.47520 * 126.45729 * 179.81644 * 6 5 3 8 8 O 1.21595 * 119.99585 * 179.68511 * 7 6 5 9 9 N 1.34772 * 120.00480 * 359.68978 * 7 6 5 10 10 C 1.48659 * 125.78422 * 359.97038 * 9 7 6 11 11 C 1.53053 * 103.44535 * 155.62394 * 10 9 7 12 12 H 1.09002 * 110.55793 * 283.27272 * 11 10 9 13 13 C 1.51622 * 116.68044 * 155.89133 * 11 10 9 14 14 C 1.53814 * 107.02120 * 182.59703 * 13 11 10 15 15 C 1.52522 * 111.70114 * 57.53833 * 14 13 11 16 16 C 1.53846 * 111.66319 * 305.95545 * 15 14 13 17 17 H 1.09003 * 109.94096 * 176.66345 * 16 15 14 18 18 N 1.46496 * 109.93955 * 297.81387 * 16 15 14 19 19 C 1.36940 * 119.99710 * 208.58333 * 18 16 15 20 20 H 1.08003 * 120.00306 * 359.72771 * 19 18 16 21 21 C 1.38815 * 119.99665 * 180.02562 * 19 18 16 22 22 N 1.31610 * 120.00210 * 359.72440 * 21 19 18 23 23 Si 1.86800 * 119.99717 * 179.72370 * 21 19 18 24 24 H 1.48493 * 109.47397 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46886 * 120.00218 * 23 21 19 26 26 H 1.48502 * 109.47276 * 239.99883 * 23 21 19 27 27 C 1.51438 * 107.11304 * 57.24198 * 16 15 14 28 28 H 1.08998 * 109.87368 * 54.14413 * 27 16 15 29 29 C 1.48240 * 125.78624 * 179.97438 * 9 7 6 30 30 C 1.35776 * 126.45773 * 180.02562 * 2 1 3 31 31 O 1.36088 * 127.26766 * 359.97186 * 30 2 1 32 32 H 1.09000 * 109.47068 * 269.97069 * 1 2 3 33 33 H 1.08997 * 109.46905 * 29.96976 * 1 2 3 34 34 H 1.09000 * 109.46978 * 149.96908 * 1 2 3 35 35 H 1.09008 * 110.62426 * 37.13717 * 10 9 7 36 36 H 1.08994 * 110.62932 * 274.11751 * 10 9 7 37 37 H 1.09004 * 109.94279 * 63.22060 * 13 11 10 38 38 H 1.09000 * 109.94470 * 301.97735 * 13 11 10 39 39 H 1.08997 * 109.03434 * 296.96338 * 14 13 11 40 40 H 1.09006 * 108.97679 * 178.06772 * 14 13 11 41 41 H 1.09001 * 109.04118 * 185.39580 * 15 14 13 42 42 H 1.08996 * 108.98603 * 66.47997 * 15 14 13 43 43 H 0.97000 * 120.00311 * 28.58876 * 18 16 15 44 44 H 0.97000 * 120.00371 * 179.97438 * 22 21 19 45 45 H 1.09001 * 110.17126 * 295.91638 * 29 9 7 46 46 H 1.09002 * 110.16867 * 57.71317 * 29 9 7 47 47 H 0.96697 * 114.00144 * 269.99841 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3143 1.0925 0.0000 4 1 2.0045 2.0117 0.0004 5 7 3.5472 0.7320 0.0053 6 6 3.6374 -0.5842 -0.0009 7 6 4.8810 -1.3777 -0.0015 8 8 4.8271 -2.5925 -0.0019 9 7 6.0769 -0.7563 -0.0017 10 6 6.2923 0.7146 -0.0019 11 6 7.6854 0.8704 0.6124 12 1 7.6443 0.7362 1.6933 13 6 8.4462 2.1345 0.2627 14 6 9.8251 2.0310 0.9363 15 6 10.5775 0.7810 0.4919 16 6 9.7409 -0.4921 0.7072 17 1 10.2799 -1.3598 0.3269 18 7 9.4558 -0.6671 2.1335 19 6 9.2699 -1.9236 2.6453 20 1 9.3290 -2.7852 1.9967 21 6 8.9992 -2.0895 3.9966 22 7 8.9266 -1.0396 4.7870 23 14 8.7379 -3.8029 4.6934 24 1 8.8714 -4.8051 3.6059 25 1 9.7553 -4.0716 5.7412 26 1 7.3798 -3.8940 5.2872 27 6 8.4477 -0.3105 -0.0595 28 1 8.6646 -0.0673 -1.0997 29 6 7.4006 -1.4237 -0.0018 30 6 2.3139 -1.0920 -0.0005 31 8 1.9325 -2.3984 -0.0005 32 1 -0.3633 -0.0005 1.0277 33 1 -0.3633 0.8902 -0.5134 34 1 -0.3633 -0.8897 -0.5143 35 1 5.5432 1.2124 0.6140 36 1 6.2754 1.1050 -1.0194 37 1 7.9122 3.0064 0.6408 38 1 8.5650 2.2100 -0.8181 39 1 9.6911 1.9997 2.0176 40 1 10.4134 2.9112 0.6766 41 1 11.5018 0.7001 1.0638 42 1 10.8213 0.8714 -0.5666 43 1 9.3987 0.1069 2.7153 44 1 8.7371 -1.1554 5.7312 45 1 7.5350 -1.9922 0.9185 46 1 7.4900 -2.0810 -0.8667 47 1 1.8226 -2.7761 0.8828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992702786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:03 Heat of formation + Delta-G solvation = -12.137067 kcal Electronic energy + Delta-G solvation = -30244.283728 eV Core-core repulsion = 26235.022354 eV Total energy + Delta-G solvation = -4009.261375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.76321 -41.41086 -39.70552 -38.21801 -36.80604 -35.35282 -33.77108 -33.06112 -32.25602 -31.34919 -30.55371 -28.32858 -27.71777 -26.49255 -25.49192 -23.98103 -22.40184 -22.11171 -21.94448 -20.24072 -20.10182 -19.32628 -19.12829 -18.15402 -17.69477 -17.17406 -16.86445 -16.58127 -16.27587 -15.88321 -15.59473 -15.35119 -15.21939 -15.13944 -14.75849 -14.46166 -14.16937 -13.76152 -13.72014 -13.61891 -13.31951 -13.18413 -13.13921 -12.91841 -12.87449 -12.59260 -12.52454 -12.35089 -12.11791 -11.81357 -11.62281 -11.51848 -11.32213 -11.10791 -11.05549 -10.88146 -10.55882 -10.45899 -9.78652 -9.59919 -8.93905 -7.92613 -5.15623 0.37659 0.82554 1.40130 1.43588 1.50713 1.69356 2.00329 2.22563 2.55347 3.03335 3.40609 3.46822 3.63952 3.68888 3.81190 3.85487 3.93650 4.16130 4.29644 4.35276 4.39223 4.43841 4.56634 4.67034 4.69158 4.73543 4.75610 4.76697 4.81769 4.90459 4.96310 4.99015 5.11312 5.13736 5.17323 5.22528 5.29112 5.40604 5.48381 5.51292 5.58291 5.59348 5.77258 6.01399 6.31474 6.47551 6.66840 6.74433 7.07499 7.39200 8.17674 8.39995 9.30858 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.004239 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.326762 B = 6603.851001 C = 8176.570678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.016 3.984 3 N -0.352 5.352 4 H 0.470 0.530 5 N -0.241 5.241 6 C -0.055 4.055 7 C 0.596 3.404 8 O -0.578 6.578 9 N -0.604 5.604 10 C 0.122 3.878 11 C -0.098 4.098 12 H 0.056 0.944 13 C -0.088 4.088 14 C -0.112 4.112 15 C -0.113 4.113 16 C 0.179 3.821 17 H 0.046 0.954 18 N -0.721 5.721 19 C -0.217 4.217 20 H 0.067 0.933 21 C -0.070 4.070 22 N -0.964 5.964 23 Si 0.949 3.051 24 H -0.274 1.274 25 H -0.290 1.290 26 H -0.303 1.303 27 C -0.108 4.108 28 H 0.096 0.904 29 C 0.116 3.884 30 C 0.011 3.989 31 O -0.468 6.468 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.035 0.965 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.089 0.911 43 H 0.376 0.624 44 H 0.247 0.753 45 H 0.050 0.950 46 H 0.058 0.942 47 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.126 12.579 -13.480 23.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 N -0.073 5.073 4 H 0.320 0.680 5 N -0.080 5.080 6 C -0.215 4.215 7 C 0.384 3.616 8 O -0.457 6.457 9 N -0.336 5.336 10 C 0.001 3.999 11 C -0.117 4.117 12 H 0.074 0.926 13 C -0.126 4.126 14 C -0.150 4.150 15 C -0.151 4.151 16 C 0.070 3.930 17 H 0.064 0.936 18 N -0.362 5.362 19 C -0.349 4.349 20 H 0.085 0.915 21 C -0.262 4.262 22 N -0.616 5.616 23 Si 0.780 3.220 24 H -0.198 1.198 25 H -0.217 1.217 26 H -0.231 1.231 27 C -0.130 4.130 28 H 0.114 0.886 29 C -0.005 4.005 30 C -0.045 4.045 31 O -0.275 6.275 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.053 0.947 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.210 0.790 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -13.517 12.648 -14.092 23.266 hybrid contribution -0.594 -1.691 1.804 2.543 sum -14.112 10.958 -12.288 21.684 Atomic orbital electron populations 1.20504 0.82494 1.05605 1.04945 1.22007 0.96964 0.85915 1.06241 1.43280 1.01945 1.10340 1.51723 0.68023 1.73643 1.02876 1.12816 1.18633 1.22130 0.94817 0.91036 1.13475 1.16974 0.81879 0.85980 0.76745 1.90754 1.86993 1.14569 1.53369 1.49038 1.04727 1.09397 1.70461 1.22288 0.97405 0.78469 1.01730 1.22022 0.93165 0.96687 0.99869 0.92550 1.21266 0.94508 0.95265 1.01518 1.21445 0.96296 0.97795 0.99420 1.21728 0.97798 0.93454 1.02129 1.20177 0.92387 0.96751 0.83673 0.93621 1.42553 1.84403 1.04706 1.04499 1.19495 1.37088 0.86623 0.91704 0.91496 1.25236 1.04591 0.99316 0.97093 1.69767 1.58658 1.28936 1.04229 0.85412 0.76464 0.81717 0.78376 1.19846 1.21696 1.23142 1.22596 0.95861 0.94138 1.00396 0.88621 1.21733 0.81637 0.96399 1.00773 1.18138 0.89008 0.86070 1.11292 1.84808 1.88595 1.19839 1.34285 0.88464 0.87828 0.89429 0.89474 0.89484 0.90697 0.89400 0.94657 0.89869 0.92903 0.89289 0.79027 0.94421 0.93186 0.92365 0.74558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.44 71.24 0.74 0.10 16 2 C 0.02 0.29 7.27 41.37 0.30 0.59 16 3 N -0.35 -5.89 6.87 -47.26 -0.32 -6.22 16 4 H 0.47 3.25 8.96 -220.00 -1.97 1.27 16 5 N -0.24 -6.32 9.35 -48.09 -0.45 -6.77 16 6 C -0.06 -1.86 6.98 42.45 0.30 -1.56 16 7 C 0.60 25.07 7.86 86.69 0.68 25.75 16 8 O -0.58 -28.47 16.87 -1.93 -0.03 -28.50 16 9 N -0.60 -23.50 3.38 -815.51 -2.76 -26.26 16 10 C 0.12 3.76 5.83 85.98 0.50 4.26 16 11 C -0.10 -3.14 2.35 -10.26 -0.02 -3.16 16 12 H 0.06 2.38 6.71 -2.39 -0.02 2.36 16 13 C -0.09 -2.08 5.71 30.42 0.17 -1.91 16 14 C -0.11 -2.96 5.58 30.71 0.17 -2.79 16 15 C -0.11 -3.26 5.51 30.72 0.17 -3.09 16 16 C 0.18 6.67 3.03 44.77 0.14 6.81 16 17 H 0.05 1.77 8.06 -2.39 -0.02 1.75 16 18 N -0.72 -34.93 3.94 -324.02 -1.28 -36.20 16 19 C -0.22 -12.08 8.21 84.03 0.69 -11.39 16 20 H 0.07 3.73 7.67 -2.91 -0.02 3.70 16 21 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 22 N -0.96 -59.62 13.06 21.65 0.28 -59.34 16 23 Si 0.95 48.97 29.55 68.60 2.03 51.00 16 24 H -0.27 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 26 H -0.30 -16.04 7.11 99.48 0.71 -15.33 16 27 C -0.11 -3.64 2.17 -10.36 -0.02 -3.66 16 28 H 0.10 2.62 7.92 -2.39 -0.02 2.60 16 29 C 0.12 4.75 6.63 86.02 0.57 5.32 16 30 C 0.01 0.30 7.28 22.57 0.16 0.47 16 31 O -0.47 -13.59 13.20 -92.46 -1.22 -14.81 16 32 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 2.67 6.24 -2.38 -0.01 2.66 16 36 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.09 1.64 7.98 -2.39 -0.02 1.63 16 39 H 0.03 1.16 7.04 -2.39 -0.02 1.15 16 40 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.38 19.57 6.04 -92.71 -0.56 19.01 16 44 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 45 H 0.05 2.51 6.00 -2.39 -0.01 2.50 16 46 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.40 8.71 9.07 -74.06 -0.67 8.04 16 Total: -1.00 -82.55 371.15 -0.90 -83.46 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -2.17 Total: 31.56 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 5.02 Total: 12.08 kcal Atomic # 7 Polarization: -130.26 SS G_CDS: -4.52 Total: -134.79 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -1.25 Total: -43.31 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 2.03 Total: 51.00 kcal Total: -82.55 -0.90 -83.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992702786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.319 kcal (2) G-P(sol) polarization free energy of solvation -82.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds