Wall clock time and date at job start Tue Mar 31 2020 18:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.35838 * 126.45968 * 2 1 4 4 H 0.97001 * 124.91667 * 0.02562 * 3 2 1 5 5 N 1.28460 * 110.16792 * 179.97438 * 3 2 1 6 6 C 1.31927 * 110.21028 * 0.02562 * 5 3 2 7 7 C 1.47524 * 126.46270 * 179.97438 * 6 5 3 8 8 O 1.21592 * 120.00281 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99458 * 0.02562 * 7 6 5 10 10 C 1.48662 * 125.78657 * 359.97438 * 9 7 6 11 11 C 1.53065 * 103.44376 * 155.64247 * 10 9 7 12 12 H 1.08997 * 111.35607 * 284.01593 * 11 10 9 13 13 C 1.51610 * 116.67886 * 155.89137 * 11 10 9 14 14 C 1.53810 * 107.02411 * 183.74150 * 13 11 10 15 15 C 1.52527 * 111.70509 * 57.53608 * 14 13 11 16 16 C 1.53848 * 111.65867 * 305.95389 * 15 14 13 17 17 H 1.08998 * 110.00784 * 297.78050 * 16 15 14 18 18 N 1.46496 * 109.93955 * 176.58046 * 16 15 14 19 19 C 1.36945 * 119.99718 * 87.40547 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48499 * 109.46981 * 150.00382 * 23 21 19 27 27 C 1.51439 * 107.03693 * 57.19793 * 16 15 14 28 28 H 1.09004 * 109.87637 * 54.19624 * 27 16 15 29 29 C 1.48246 * 125.78023 * 180.02562 * 9 7 6 30 30 C 1.35783 * 126.46238 * 180.29484 * 2 1 3 31 31 O 1.36086 * 127.26577 * 0.02562 * 30 2 1 32 32 H 1.08998 * 109.46698 * 89.97848 * 1 2 3 33 33 H 1.08997 * 109.47048 * 209.97632 * 1 2 3 34 34 H 1.09002 * 109.46909 * 329.97666 * 1 2 3 35 35 H 1.08996 * 110.62569 * 37.15594 * 10 9 7 36 36 H 1.09001 * 110.76308 * 274.19612 * 10 9 7 37 37 H 1.09009 * 109.94358 * 303.12090 * 13 11 10 38 38 H 1.08995 * 109.94796 * 64.27389 * 13 11 10 39 39 H 1.09007 * 109.03725 * 178.10567 * 14 13 11 40 40 H 1.08997 * 109.03506 * 296.96362 * 14 13 11 41 41 H 1.08997 * 109.04532 * 185.39305 * 15 14 13 42 42 H 1.08999 * 109.04293 * 66.51618 * 15 14 13 43 43 H 0.96996 * 120.00499 * 267.40278 * 18 16 15 44 44 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 45 45 H 1.09000 * 110.17243 * 57.69495 * 29 9 7 46 46 H 1.09003 * 110.17132 * 295.89544 * 29 9 7 47 47 H 0.96695 * 113.99966 * 270.12899 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0044 2.0117 0.0004 5 7 3.5472 0.7321 0.0005 6 6 3.6374 -0.5840 0.0004 7 6 4.8810 -1.3777 0.0003 8 8 4.8271 -2.5924 -0.0003 9 7 6.0769 -0.7561 0.0010 10 6 6.2922 0.7148 0.0012 11 6 7.6853 0.8705 0.6159 12 1 7.6611 0.7255 1.6959 13 6 8.4460 2.1347 0.2668 14 6 9.8353 2.0182 0.9165 15 6 10.5746 0.7694 0.4470 16 6 9.7358 -0.5021 0.6632 17 1 9.5404 -0.6436 1.7261 18 7 10.4454 -1.6659 0.1265 19 6 11.3399 -2.3441 0.9110 20 1 11.5224 -2.0206 1.9251 21 6 12.0118 -3.4472 0.4027 22 7 11.7896 -3.8412 -0.8334 23 14 13.2325 -4.3719 1.4725 24 1 14.5847 -3.7818 1.3039 25 1 12.8212 -4.2683 2.8957 26 1 13.2619 -5.8005 1.0685 27 6 8.4312 -0.3046 -0.0800 28 1 8.6323 -0.0519 -1.1211 29 6 7.4006 -1.4236 0.0005 30 6 2.3139 -1.0920 -0.0056 31 8 1.9326 -2.3983 -0.0128 32 1 -0.3632 0.0004 -1.0277 33 1 -0.3633 -0.8902 0.5134 34 1 -0.3633 0.8898 0.5142 35 1 5.5430 1.2124 0.6170 36 1 6.2748 1.1081 -1.0152 37 1 8.5475 2.2207 -0.8151 38 1 7.9216 3.0050 0.6611 39 1 10.4239 2.8982 0.6573 40 1 9.7189 1.9763 1.9994 41 1 11.5078 0.6785 1.0027 42 1 10.8025 0.8689 -0.6143 43 1 10.2816 -1.9563 -0.7843 44 1 12.2595 -4.6118 -1.1886 45 1 7.4902 -2.0802 -0.8649 46 1 7.5350 -1.9926 0.9204 47 1 1.8202 -2.7801 0.8684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992702790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:07 Heat of formation + Delta-G solvation = 10.799716 kcal Electronic energy + Delta-G solvation = -29419.589311 eV Core-core repulsion = 25411.322550 eV Total energy + Delta-G solvation = -4008.266761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.93719 -40.17297 -38.35517 -37.32582 -35.40319 -33.92294 -33.02562 -31.53032 -31.31294 -30.22870 -28.85795 -27.23017 -26.63582 -25.32305 -23.64475 -22.73164 -21.57337 -20.78075 -20.28461 -19.64795 -19.08235 -18.43105 -17.35391 -17.13346 -16.51024 -16.20629 -15.66885 -15.12712 -14.87824 -14.41825 -14.20521 -14.16001 -14.01296 -13.93816 -13.58839 -13.36466 -13.04654 -12.94224 -12.70344 -12.47016 -12.31354 -12.18153 -11.86517 -11.70036 -11.28311 -10.94975 -10.84307 -10.73756 -10.56801 -10.40762 -10.18355 -10.15901 -10.08944 -9.85555 -9.71944 -9.58139 -9.39082 -8.99005 -8.83762 -8.38594 -6.91294 -5.71303 -3.00247 1.34425 1.65106 2.41994 3.04548 3.41944 3.47344 3.52597 3.54478 3.96238 4.28410 4.40813 4.50578 4.63432 4.69100 4.92075 4.95397 5.04653 5.16071 5.35417 5.39064 5.42766 5.45827 5.54653 5.62168 5.65465 5.69825 5.81511 5.86703 5.95110 5.97949 6.00897 6.13338 6.16406 6.25184 6.33770 6.46279 6.49592 6.59080 6.64907 6.66948 6.70165 6.91693 7.13819 7.45942 7.52599 7.70283 7.74985 8.33506 8.46797 9.58209 10.15139 10.49813 11.51164 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015793 B = 0.002947 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.473931 B = 9499.758848 C =10977.770907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.014 4.014 3 N -0.378 5.378 4 H 0.449 0.551 5 N -0.241 5.241 6 C -0.018 4.018 7 C 0.608 3.392 8 O -0.523 6.523 9 N -0.609 5.609 10 C 0.115 3.885 11 C -0.108 4.108 12 H 0.084 0.916 13 C -0.099 4.099 14 C -0.114 4.114 15 C -0.138 4.138 16 C 0.196 3.804 17 H 0.051 0.949 18 N -0.722 5.722 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.904 3.096 24 H -0.291 1.291 25 H -0.282 1.282 26 H -0.292 1.292 27 C -0.103 4.103 28 H 0.078 0.922 29 C 0.128 3.872 30 C 0.046 3.954 31 O -0.451 6.451 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.646 16.196 2.902 27.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.139 4.139 3 N -0.095 5.095 4 H 0.294 0.706 5 N -0.078 5.078 6 C -0.179 4.179 7 C 0.394 3.606 8 O -0.398 6.398 9 N -0.343 5.343 10 C -0.008 4.008 11 C -0.128 4.128 12 H 0.102 0.898 13 C -0.137 4.137 14 C -0.153 4.153 15 C -0.178 4.178 16 C 0.085 3.915 17 H 0.069 0.931 18 N -0.362 5.362 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.208 1.208 26 H -0.218 1.218 27 C -0.123 4.123 28 H 0.096 0.904 29 C 0.007 3.993 30 C -0.010 4.010 31 O -0.256 6.256 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -21.946 16.294 2.415 27.440 hybrid contribution 0.133 -0.819 0.646 1.052 sum -21.813 15.475 3.061 26.919 Atomic orbital electron populations 1.20278 0.86028 1.03794 1.03535 1.21548 0.95372 0.87462 1.09566 1.43126 1.03029 1.09178 1.54178 0.70616 1.73744 1.01138 1.14221 1.18694 1.22431 0.95355 0.89894 1.10254 1.16401 0.80567 0.86037 0.77613 1.90851 1.85990 1.12441 1.50469 1.49034 1.05428 1.08045 1.71756 1.22182 0.97095 0.80353 1.01123 1.22129 0.93525 0.96490 1.00630 0.89779 1.21296 0.95637 0.95920 1.00870 1.21541 0.95243 0.98446 1.00030 1.22321 0.99734 0.94613 1.01174 1.19944 0.88061 0.87479 0.95970 0.93075 1.42407 1.48704 1.30125 1.14967 1.19213 1.15217 1.07138 0.95361 0.91244 1.24728 1.00658 0.98987 0.96468 1.69659 1.45748 1.28152 1.14388 0.86229 0.81326 0.79280 0.79590 1.21846 1.20802 1.21821 1.22179 0.95459 0.93928 1.00774 0.90397 1.21630 0.79260 0.95189 1.03260 1.17798 0.89003 0.85161 1.09004 1.84915 1.88688 1.19096 1.32941 0.90175 0.89547 0.91032 0.89332 0.91445 0.91698 0.92183 0.92790 0.92617 0.92057 0.92735 0.78194 0.93531 0.90716 0.90617 0.75852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.44 36.01 0.38 0.03 16 2 C -0.01 -0.11 7.27 -81.70 -0.59 -0.71 16 3 N -0.38 -2.87 6.87 33.71 0.23 -2.64 16 4 H 0.45 1.51 8.96 -190.44 -1.71 -0.19 16 5 N -0.24 -2.72 9.35 33.45 0.31 -2.40 16 6 C -0.02 -0.25 6.98 -82.70 -0.58 -0.83 16 7 C 0.61 10.65 7.86 -12.47 -0.10 10.55 16 8 O -0.52 -10.96 16.87 3.09 0.05 -10.91 16 9 N -0.61 -9.88 3.38 -172.08 -0.58 -10.46 16 10 C 0.12 1.48 5.79 -2.81 -0.02 1.47 16 11 C -0.11 -1.42 2.50 -89.90 -0.22 -1.64 16 12 H 0.08 1.14 8.01 -51.93 -0.42 0.72 16 13 C -0.10 -1.14 5.71 -27.01 -0.15 -1.29 16 14 C -0.11 -1.48 5.83 -26.55 -0.15 -1.64 16 15 C -0.14 -2.35 5.47 -26.53 -0.15 -2.49 16 16 C 0.20 3.77 2.52 -68.28 -0.17 3.59 16 17 H 0.05 1.02 7.98 -51.93 -0.41 0.61 16 18 N -0.72 -17.77 5.05 -53.77 -0.27 -18.04 16 19 C -0.24 -6.56 9.95 -15.06 -0.15 -6.71 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 23 Si 0.90 22.68 29.55 -169.99 -5.02 17.66 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 C -0.10 -1.70 1.83 -90.36 -0.17 -1.87 16 28 H 0.08 1.30 7.92 -51.93 -0.41 0.89 16 29 C 0.13 2.31 6.51 -3.42 -0.02 2.29 16 30 C 0.05 0.57 7.28 -39.12 -0.28 0.28 16 31 O -0.45 -5.54 13.20 -22.20 -0.29 -5.83 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.09 1.05 6.25 -51.93 -0.32 0.72 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.74 7.98 -51.92 -0.41 0.33 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.38 10.17 7.81 -40.82 -0.32 9.85 16 44 H 0.25 7.56 8.31 -40.82 -0.34 7.23 16 45 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.08 1.51 8.08 -51.93 -0.42 1.09 16 47 H 0.39 3.10 9.06 45.56 0.41 3.51 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -35.80 379.70 -9.39 -45.20 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -7.79 Total: 8.80 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -2.48 Total: 0.59 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: 0.42 Total: -61.22 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.24 Total: -16.74 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.80 -9.39 -45.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992702790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.995 kcal (2) G-P(sol) polarization free energy of solvation -35.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds