Wall clock time and date at job start Tue Mar 31 2020 18:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.35838 * 126.45968 * 2 1 4 4 H 0.97001 * 124.91667 * 0.02562 * 3 2 1 5 5 N 1.28460 * 110.16792 * 179.97438 * 3 2 1 6 6 C 1.31927 * 110.21028 * 0.02562 * 5 3 2 7 7 C 1.47524 * 126.46270 * 179.97438 * 6 5 3 8 8 O 1.21592 * 120.00281 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99458 * 0.02562 * 7 6 5 10 10 C 1.48662 * 125.78657 * 359.97438 * 9 7 6 11 11 C 1.53065 * 103.44376 * 155.64247 * 10 9 7 12 12 H 1.08997 * 111.35607 * 284.01593 * 11 10 9 13 13 C 1.51610 * 116.67886 * 155.89137 * 11 10 9 14 14 C 1.53810 * 107.02411 * 183.74150 * 13 11 10 15 15 C 1.52527 * 111.70509 * 57.53608 * 14 13 11 16 16 C 1.53848 * 111.65867 * 305.95389 * 15 14 13 17 17 H 1.08998 * 110.00784 * 297.78050 * 16 15 14 18 18 N 1.46496 * 109.93955 * 176.58046 * 16 15 14 19 19 C 1.36945 * 119.99718 * 87.40547 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48499 * 109.46981 * 150.00382 * 23 21 19 27 27 C 1.51439 * 107.03693 * 57.19793 * 16 15 14 28 28 H 1.09004 * 109.87637 * 54.19624 * 27 16 15 29 29 C 1.48246 * 125.78023 * 180.02562 * 9 7 6 30 30 C 1.35783 * 126.46238 * 180.29484 * 2 1 3 31 31 O 1.36086 * 127.26577 * 0.02562 * 30 2 1 32 32 H 1.08998 * 109.46698 * 89.97848 * 1 2 3 33 33 H 1.08997 * 109.47048 * 209.97632 * 1 2 3 34 34 H 1.09002 * 109.46909 * 329.97666 * 1 2 3 35 35 H 1.08996 * 110.62569 * 37.15594 * 10 9 7 36 36 H 1.09001 * 110.76308 * 274.19612 * 10 9 7 37 37 H 1.09009 * 109.94358 * 303.12090 * 13 11 10 38 38 H 1.08995 * 109.94796 * 64.27389 * 13 11 10 39 39 H 1.09007 * 109.03725 * 178.10567 * 14 13 11 40 40 H 1.08997 * 109.03506 * 296.96362 * 14 13 11 41 41 H 1.08997 * 109.04532 * 185.39305 * 15 14 13 42 42 H 1.08999 * 109.04293 * 66.51618 * 15 14 13 43 43 H 0.96996 * 120.00499 * 267.40278 * 18 16 15 44 44 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 45 45 H 1.09000 * 110.17243 * 57.69495 * 29 9 7 46 46 H 1.09003 * 110.17132 * 295.89544 * 29 9 7 47 47 H 0.96695 * 113.99966 * 270.12899 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0044 2.0117 0.0004 5 7 3.5472 0.7321 0.0005 6 6 3.6374 -0.5840 0.0004 7 6 4.8810 -1.3777 0.0003 8 8 4.8271 -2.5924 -0.0003 9 7 6.0769 -0.7561 0.0010 10 6 6.2922 0.7148 0.0012 11 6 7.6853 0.8705 0.6159 12 1 7.6611 0.7255 1.6959 13 6 8.4460 2.1347 0.2668 14 6 9.8353 2.0182 0.9165 15 6 10.5746 0.7694 0.4470 16 6 9.7358 -0.5021 0.6632 17 1 9.5404 -0.6436 1.7261 18 7 10.4454 -1.6659 0.1265 19 6 11.3399 -2.3441 0.9110 20 1 11.5224 -2.0206 1.9251 21 6 12.0118 -3.4472 0.4027 22 7 11.7896 -3.8412 -0.8334 23 14 13.2325 -4.3719 1.4725 24 1 14.5847 -3.7818 1.3039 25 1 12.8212 -4.2683 2.8957 26 1 13.2619 -5.8005 1.0685 27 6 8.4312 -0.3046 -0.0800 28 1 8.6323 -0.0519 -1.1211 29 6 7.4006 -1.4236 0.0005 30 6 2.3139 -1.0920 -0.0056 31 8 1.9326 -2.3983 -0.0128 32 1 -0.3632 0.0004 -1.0277 33 1 -0.3633 -0.8902 0.5134 34 1 -0.3633 0.8898 0.5142 35 1 5.5430 1.2124 0.6170 36 1 6.2748 1.1081 -1.0152 37 1 8.5475 2.2207 -0.8151 38 1 7.9216 3.0050 0.6611 39 1 10.4239 2.8982 0.6573 40 1 9.7189 1.9763 1.9994 41 1 11.5078 0.6785 1.0027 42 1 10.8025 0.8689 -0.6143 43 1 10.2816 -1.9563 -0.7843 44 1 12.2595 -4.6118 -1.1886 45 1 7.4902 -2.0802 -0.8649 46 1 7.5350 -1.9926 0.9204 47 1 1.8202 -2.7801 0.8684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992702790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:06 Heat of formation + Delta-G solvation = -17.203158 kcal Electronic energy + Delta-G solvation = -29420.803607 eV Core-core repulsion = 25411.322550 eV Total energy + Delta-G solvation = -4009.481057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.75631 -41.48198 -39.70772 -38.21058 -36.91902 -35.58972 -33.78010 -33.27056 -32.27240 -31.39965 -30.51241 -28.18726 -27.68588 -26.61070 -25.45648 -23.99136 -22.37722 -22.06288 -21.55328 -21.04720 -20.24869 -19.28779 -19.13668 -18.15375 -17.70893 -17.20100 -16.92474 -16.68354 -16.32704 -15.75388 -15.56631 -15.29280 -15.18294 -15.10526 -14.75909 -14.73345 -14.10918 -13.91179 -13.71997 -13.61515 -13.48871 -13.29725 -13.23846 -12.90804 -12.81820 -12.75124 -12.39277 -12.21433 -12.01510 -11.88081 -11.72026 -11.56463 -11.48384 -11.26867 -11.08526 -10.85241 -10.82924 -10.45530 -9.80713 -9.68548 -8.98209 -7.92630 -5.20569 0.36476 0.84627 1.45412 1.47449 1.55473 1.63858 1.96471 2.18971 2.56254 3.01045 3.32451 3.40199 3.60971 3.66925 3.70108 3.76089 3.92873 4.09220 4.23440 4.26362 4.37970 4.44834 4.50711 4.56502 4.63296 4.67370 4.70093 4.74264 4.78313 4.82581 4.87460 4.93050 4.97243 5.10618 5.15371 5.23595 5.29300 5.33317 5.39471 5.43017 5.51926 5.53407 5.70854 6.01827 6.29328 6.40596 6.67966 6.78114 7.02996 7.35161 8.11925 8.34313 9.30953 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015793 B = 0.002947 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.473931 B = 9499.758848 C =10977.770907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.015 3.985 3 N -0.350 5.350 4 H 0.470 0.530 5 N -0.236 5.236 6 C -0.054 4.054 7 C 0.600 3.400 8 O -0.575 6.575 9 N -0.609 5.609 10 C 0.121 3.879 11 C -0.092 4.092 12 H 0.084 0.916 13 C -0.091 4.091 14 C -0.108 4.108 15 C -0.128 4.128 16 C 0.191 3.809 17 H 0.042 0.958 18 N -0.736 5.736 19 C -0.233 4.233 20 H 0.075 0.925 21 C -0.078 4.078 22 N -0.971 5.971 23 Si 0.969 3.031 24 H -0.286 1.286 25 H -0.270 1.270 26 H -0.299 1.299 27 C -0.098 4.098 28 H 0.077 0.923 29 C 0.133 3.867 30 C 0.013 3.987 31 O -0.470 6.470 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.044 0.956 43 H 0.371 0.629 44 H 0.249 0.751 45 H 0.043 0.957 46 H 0.047 0.953 47 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.902 20.238 3.994 32.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 N -0.071 5.071 4 H 0.321 0.679 5 N -0.076 5.076 6 C -0.213 4.213 7 C 0.388 3.612 8 O -0.453 6.453 9 N -0.342 5.342 10 C 0.000 4.000 11 C -0.111 4.111 12 H 0.102 0.898 13 C -0.129 4.129 14 C -0.146 4.146 15 C -0.168 4.168 16 C 0.083 3.917 17 H 0.060 0.940 18 N -0.375 5.375 19 C -0.365 4.365 20 H 0.093 0.907 21 C -0.270 4.270 22 N -0.622 5.622 23 Si 0.798 3.202 24 H -0.213 1.213 25 H -0.195 1.195 26 H -0.226 1.226 27 C -0.118 4.118 28 H 0.096 0.904 29 C 0.011 3.989 30 C -0.043 4.043 31 O -0.277 6.277 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.202 0.798 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -24.219 20.445 3.551 31.894 hybrid contribution 0.700 -2.000 0.336 2.145 sum -23.520 18.445 3.887 30.141 Atomic orbital electron populations 1.20488 0.82712 1.05677 1.04690 1.21976 0.96892 0.85988 1.06316 1.43274 1.01912 1.10342 1.51546 0.67910 1.73602 1.02853 1.12588 1.18512 1.22007 0.94450 0.91027 1.13840 1.16993 0.81779 0.85921 0.76496 1.90799 1.86925 1.14782 1.52842 1.49115 1.04338 1.09488 1.71265 1.22353 0.97292 0.78117 1.02270 1.22140 0.93040 0.95752 1.00201 0.89777 1.21303 0.94353 0.95892 1.01353 1.21488 0.95978 0.96550 1.00568 1.22132 0.98896 0.95352 1.00437 1.20175 0.89252 0.86829 0.95477 0.93967 1.42621 1.48825 1.31812 1.14203 1.19592 1.14530 1.06736 0.95640 0.90728 1.25525 1.03211 1.00484 0.97805 1.69825 1.47378 1.28772 1.16216 0.85203 0.79188 0.77347 0.78448 1.21281 1.19526 1.22598 1.22007 0.93988 0.94985 1.00844 0.90438 1.21356 0.81585 0.95615 1.00393 1.18152 0.89081 0.85999 1.11061 1.84859 1.88621 1.19844 1.34413 0.89193 0.89142 0.87718 0.87346 0.90184 0.91142 0.88456 0.90580 0.91788 0.94080 0.93675 0.79756 0.94232 0.93849 0.93413 0.74428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.44 71.24 0.74 0.37 16 2 C 0.02 0.21 7.27 41.37 0.30 0.51 16 3 N -0.35 -4.02 6.87 -47.26 -0.32 -4.35 16 4 H 0.47 0.89 8.96 -219.99 -1.97 -1.08 16 5 N -0.24 -4.76 9.35 -48.09 -0.45 -5.21 16 6 C -0.05 -1.51 6.98 42.45 0.30 -1.22 16 7 C 0.60 21.99 7.86 86.69 0.68 22.68 16 8 O -0.58 -26.00 16.87 -1.91 -0.03 -26.03 16 9 N -0.61 -20.38 3.38 -816.61 -2.76 -23.14 16 10 C 0.12 2.89 5.79 85.98 0.50 3.39 16 11 C -0.09 -2.22 2.50 -10.33 -0.03 -2.25 16 12 H 0.08 2.09 8.01 -2.39 -0.02 2.07 16 13 C -0.09 -1.73 5.71 30.41 0.17 -1.55 16 14 C -0.11 -2.46 5.83 30.71 0.18 -2.28 16 15 C -0.13 -4.28 5.47 30.72 0.17 -4.11 16 16 C 0.19 7.52 2.52 44.77 0.11 7.63 16 17 H 0.04 1.73 7.98 -2.39 -0.02 1.71 16 18 N -0.74 -37.87 5.05 -324.03 -1.64 -39.51 16 19 C -0.23 -13.23 9.95 84.03 0.84 -12.40 16 20 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 22 N -0.97 -61.73 13.06 21.65 0.28 -61.45 16 23 Si 0.97 47.87 29.55 68.60 2.03 49.90 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 25 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 27 C -0.10 -3.30 1.83 -10.63 -0.02 -3.32 16 28 H 0.08 2.63 7.92 -2.39 -0.02 2.61 16 29 C 0.13 5.17 6.51 85.82 0.56 5.73 16 30 C 0.01 0.31 7.28 22.57 0.16 0.47 16 31 O -0.47 -11.80 13.20 -92.43 -1.22 -13.02 16 32 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.11 2.23 6.25 -2.39 -0.01 2.21 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.33 7.98 -2.38 -0.02 1.31 16 38 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.37 20.83 7.81 -92.71 -0.72 20.10 16 44 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 45 H 0.04 1.91 8.14 -2.39 -0.02 1.90 16 46 H 0.05 2.08 8.08 -2.39 -0.02 2.06 16 47 H 0.40 6.77 9.06 -74.06 -0.67 6.10 16 Total: -1.00 -84.12 379.70 -1.32 -85.44 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: -2.34 Total: 27.89 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 5.13 Total: 9.48 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -4.89 Total: -133.66 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -1.25 Total: -39.05 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -84.12 -1.32 -85.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992702790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.241 kcal (2) G-P(sol) polarization free energy of solvation -84.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds