Wall clock time and date at job start Tue Mar 31 2020 19:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 110.29377 * 2 1 4 4 C 1.54007 * 110.32390 * 122.13695 * 2 1 3 5 5 N 1.47485 * 107.24937 * 120.09575 * 4 2 1 6 6 C 1.34777 * 127.03293 * 154.61161 * 5 4 2 7 7 O 1.21677 * 119.99837 * 353.30936 * 6 5 4 8 8 C 1.46764 * 119.99687 * 173.30646 * 6 5 4 9 9 C 1.36938 * 126.94076 * 351.95165 * 8 6 5 10 10 N 1.33569 * 107.86441 * 179.97438 * 9 8 6 11 11 C 1.30242 * 109.65074 * 359.97438 * 10 9 8 12 12 N 1.35183 * 108.97376 * 359.79825 * 11 10 9 13 13 C 1.46506 * 123.69241 * 179.49815 * 12 11 10 14 14 C 1.53469 * 108.19596 * 344.29923 * 13 12 11 15 15 O 1.43043 * 109.60760 * 47.91620 * 14 13 12 16 16 C 1.43427 * 114.05500 * 290.03691 * 15 14 13 17 17 C 1.48385 * 105.79492 * 334.78536 * 5 4 2 18 18 C 1.54620 * 110.32659 * 237.75186 * 2 1 3 19 19 H 1.09001 * 110.73802 * 144.62500 * 18 2 1 20 20 N 1.46503 * 110.73599 * 21.29899 * 18 2 1 21 21 C 1.36943 * 119.99872 * 154.99743 * 20 18 2 22 22 H 1.08002 * 119.99813 * 0.02562 * 21 20 18 23 23 C 1.38804 * 120.00310 * 179.97438 * 21 20 18 24 24 N 1.31629 * 119.99817 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00269 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46908 * 60.00165 * 25 23 21 27 27 H 1.48494 * 109.47017 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47148 * 300.00488 * 25 23 21 29 29 H 1.09001 * 109.46827 * 299.32458 * 1 2 3 30 30 H 1.09001 * 109.46734 * 59.31558 * 1 2 3 31 31 H 1.08991 * 109.47579 * 179.31823 * 1 2 3 32 32 H 1.08997 * 109.46597 * 180.67715 * 3 2 1 33 33 H 1.09000 * 109.46688 * 300.67899 * 3 2 1 34 34 H 1.08996 * 109.46647 * 60.67992 * 3 2 1 35 35 H 1.08997 * 109.91122 * 239.55828 * 4 2 1 36 36 H 1.09007 * 109.91189 * 0.64247 * 4 2 1 37 37 H 1.07997 * 126.07022 * 359.97438 * 9 8 6 38 38 H 1.09006 * 109.89704 * 224.50567 * 13 12 11 39 39 H 1.09007 * 109.53977 * 103.89055 * 13 12 11 40 40 H 1.08992 * 109.45087 * 287.87284 * 14 13 12 41 41 H 1.09000 * 109.44826 * 167.95613 * 14 13 12 42 42 H 1.08999 * 109.79014 * 290.04941 * 16 15 14 43 43 H 1.09005 * 109.78755 * 169.21359 * 16 15 14 44 44 H 1.08995 * 110.51824 * 280.62595 * 17 5 4 45 45 H 1.09000 * 110.83354 * 157.65136 * 17 5 4 46 46 H 0.96998 * 120.00299 * 334.99795 * 20 18 2 47 47 H 0.96996 * 119.99446 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0607 1.4350 0.0000 4 6 2.0650 -0.7682 1.2229 5 7 2.8792 -1.8878 0.7142 6 6 3.8885 -2.5130 1.3522 7 8 4.2914 -2.0863 2.4181 8 6 4.5014 -3.7084 0.7612 9 6 4.0680 -4.3962 -0.3407 10 7 4.9054 -5.4171 -0.5420 11 6 5.8360 -5.4065 0.3691 12 7 5.6277 -4.3590 1.1979 13 6 6.4820 -4.0496 2.3471 14 6 7.3402 -5.2847 2.6527 15 8 7.9291 -5.7711 1.4433 16 6 6.9921 -6.3655 0.5346 17 6 2.3603 -2.1797 -0.6450 18 6 2.0671 -0.7737 -1.2263 19 1 2.9806 -0.3136 -1.6031 20 7 1.0503 -0.8489 -2.2782 21 6 1.4274 -1.0095 -3.5849 22 1 2.4745 -1.0811 -3.8398 23 6 0.4641 -1.0813 -4.5816 24 7 -0.8121 -0.9946 -4.2708 25 14 0.9786 -1.2997 -6.3640 26 1 1.7389 -2.5671 -6.5080 27 1 -0.2297 -1.3461 -7.2258 28 1 1.8358 -0.1589 -6.7750 29 1 -0.3633 0.5033 0.8960 30 1 -0.3633 0.5244 -0.8838 31 1 -0.3634 -1.0275 -0.0122 32 1 3.1505 1.4193 -0.0121 33 1 1.6949 1.9576 -0.8838 34 1 1.7147 1.9503 0.8960 35 1 2.6808 -0.1093 1.8350 36 1 1.2329 -1.1525 1.8130 37 1 3.2027 -4.1559 -0.9406 38 1 5.8657 -3.8064 3.2127 39 1 7.1264 -3.2043 2.1053 40 1 6.7142 -6.0624 3.0899 41 1 8.1273 -5.0145 3.3566 42 1 6.6323 -7.3106 0.9413 43 1 7.4708 -6.5363 -0.4297 44 1 1.4458 -2.7698 -0.5862 45 1 3.1111 -2.6947 -1.2442 46 1 0.1099 -0.7850 -2.0493 47 1 -1.4852 -1.0444 -4.9674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995936143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:52 Heat of formation + Delta-G solvation = -0.595936 kcal Electronic energy + Delta-G solvation = -29905.440239 eV Core-core repulsion = 25896.679326 eV Total energy + Delta-G solvation = -4008.760914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.71383 -41.25700 -39.44240 -39.20072 -35.97970 -35.28447 -34.73968 -32.71376 -31.91061 -30.99438 -29.27808 -28.30989 -28.29004 -26.46893 -25.87129 -24.88775 -24.09485 -22.71997 -21.44428 -20.33762 -19.94031 -19.21247 -18.56221 -18.06880 -17.70827 -17.22404 -16.94660 -16.43170 -16.28442 -16.19710 -15.95242 -15.64557 -15.39248 -15.29599 -14.88228 -14.57138 -14.44729 -14.39359 -14.18789 -13.87775 -13.32779 -13.17421 -12.98547 -12.89867 -12.80709 -12.70803 -12.53505 -12.34163 -12.10019 -12.09067 -11.90720 -11.74757 -11.51112 -11.35088 -11.20442 -11.09450 -10.91473 -10.83626 -9.94813 -9.63875 -8.98311 -7.92593 -5.20819 0.04836 1.12008 1.51380 1.52308 1.54709 1.58076 1.94011 2.07656 2.58202 2.59296 2.92961 3.14909 3.37419 3.39041 3.65262 3.72027 3.82169 3.87116 3.88795 3.98590 4.08824 4.18524 4.26574 4.30019 4.41282 4.45219 4.46914 4.54073 4.60984 4.63913 4.75899 4.78622 4.80963 4.86319 4.97261 5.02690 5.11424 5.17704 5.26848 5.31778 5.41509 5.50840 5.57683 5.66561 5.86506 6.28472 6.30569 6.63520 6.88341 7.38561 8.09798 8.36027 9.29831 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012655 B = 0.003533 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.102429 B = 7923.776438 C = 9687.621979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.080 4.080 3 C -0.127 4.127 4 C 0.125 3.875 5 N -0.600 5.600 6 C 0.610 3.390 7 O -0.576 6.576 8 C -0.086 4.086 9 C 0.022 3.978 10 N -0.505 5.505 11 C 0.188 3.812 12 N -0.428 5.428 13 C 0.065 3.935 14 C 0.051 3.949 15 O -0.379 6.379 16 C 0.150 3.850 17 C 0.072 3.928 18 C 0.174 3.826 19 H 0.055 0.945 20 N -0.719 5.719 21 C -0.244 4.244 22 H 0.073 0.927 23 C -0.062 4.062 24 N -0.963 5.963 25 Si 0.963 3.037 26 H -0.280 1.280 27 H -0.297 1.297 28 H -0.281 1.281 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.193 0.807 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.154 0.846 42 H 0.115 0.885 43 H 0.144 0.856 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.386 0.614 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.723 -6.708 16.526 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.082 4.082 3 C -0.184 4.184 4 C 0.003 3.997 5 N -0.331 5.331 6 C 0.400 3.600 7 O -0.458 6.458 8 C -0.203 4.203 9 C -0.132 4.132 10 N -0.225 5.225 11 C -0.075 4.075 12 N -0.109 5.109 13 C -0.056 4.056 14 C -0.025 4.025 15 O -0.296 6.296 16 C 0.072 3.928 17 C -0.053 4.053 18 C 0.063 3.937 19 H 0.073 0.927 20 N -0.361 5.361 21 C -0.376 4.376 22 H 0.091 0.909 23 C -0.256 4.256 24 N -0.613 5.613 25 Si 0.793 3.207 26 H -0.206 1.206 27 H -0.223 1.223 28 H -0.208 1.208 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.210 0.790 38 H 0.128 0.872 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.172 0.828 42 H 0.133 0.867 43 H 0.162 0.838 44 H 0.094 0.906 45 H 0.103 0.897 46 H 0.222 0.778 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 14.337 -7.005 16.476 22.936 hybrid contribution -0.894 0.692 -0.716 1.338 sum 13.443 -6.313 15.760 21.655 Atomic orbital electron populations 1.21676 0.92985 1.01785 1.02167 1.21675 0.96803 0.96166 0.93527 1.21757 1.00320 0.93920 1.02397 1.22262 0.94168 0.87281 0.96010 1.48366 1.32332 1.34283 1.18103 1.16336 0.78764 0.81485 0.83408 1.90737 1.63848 1.67738 1.23503 1.20476 0.95439 1.01461 1.02892 1.23592 1.01006 0.92753 0.95851 1.69822 1.05296 1.22810 1.24530 1.25048 1.00397 0.92574 0.89520 1.45244 1.19973 1.21722 1.24010 1.23099 0.93305 1.01809 0.87373 1.23277 0.98831 0.93103 0.87305 1.88164 1.33168 1.78364 1.29871 1.21652 0.83052 0.91215 0.96834 1.23929 0.99086 1.01274 0.81050 1.21371 0.92264 0.92012 0.88094 0.92687 1.42645 1.05065 1.86482 1.01861 1.19543 0.92535 1.40721 0.84809 0.90923 1.25385 0.95326 1.03452 1.01394 1.69775 0.99761 1.58737 1.32987 0.85374 0.76415 0.78089 0.80848 1.20629 1.22313 1.20757 0.90298 0.93110 0.93152 0.92930 0.93180 0.90445 0.89962 0.90114 0.79049 0.87233 0.88874 0.90024 0.82803 0.86702 0.83848 0.90588 0.89715 0.77769 0.93975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 7.02 71.98 0.51 -3.32 16 2 C -0.08 -2.38 0.95 -51.29 -0.05 -2.43 16 3 C -0.13 -3.41 8.23 71.98 0.59 -2.82 16 4 C 0.12 3.46 6.31 86.53 0.55 4.01 16 5 N -0.60 -18.71 3.30 -813.30 -2.69 -21.39 16 6 C 0.61 20.07 7.85 86.47 0.68 20.75 16 7 O -0.58 -20.30 15.84 -4.28 -0.07 -20.37 16 8 C -0.09 -2.69 6.88 40.23 0.28 -2.41 16 9 C 0.02 0.69 10.22 84.12 0.86 1.55 16 10 N -0.51 -15.63 11.19 -186.48 -2.09 -17.72 16 11 C 0.19 4.74 7.78 138.29 1.08 5.81 16 12 N -0.43 -11.31 3.16 -500.84 -1.59 -12.89 16 13 C 0.07 1.24 6.55 86.54 0.57 1.81 16 14 C 0.05 0.59 6.83 72.14 0.49 1.08 16 15 O -0.38 -5.84 10.79 -148.98 -1.61 -7.45 16 16 C 0.15 2.34 7.29 71.37 0.52 2.86 16 17 C 0.07 2.41 5.32 86.68 0.46 2.87 16 18 C 0.17 6.40 3.16 46.21 0.15 6.54 16 19 H 0.06 2.15 7.82 -2.39 -0.02 2.13 16 20 N -0.72 -33.06 4.97 -317.19 -1.58 -34.64 16 21 C -0.24 -12.77 9.96 84.03 0.84 -11.93 16 22 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 23 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 24 N -0.96 -55.96 13.06 21.65 0.28 -55.67 16 25 Si 0.96 44.85 29.55 68.60 2.03 46.87 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 27 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 28 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.05 1.79 7.00 -2.39 -0.02 1.78 16 31 H 0.05 1.57 7.95 -2.39 -0.02 1.55 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 2.21 7.54 -2.39 -0.02 2.19 16 36 H 0.08 2.05 7.68 -2.38 -0.02 2.03 16 37 H 0.19 6.11 5.05 -2.91 -0.01 6.10 16 38 H 0.11 2.15 7.38 -2.38 -0.02 2.13 16 39 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.08 0.74 8.10 -2.39 -0.02 0.73 16 41 H 0.15 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.14 1.85 8.14 -2.38 -0.02 1.83 16 44 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.08 2.91 5.02 -2.39 -0.01 2.89 16 46 H 0.39 18.68 5.13 -92.71 -0.48 18.20 16 47 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -68.89 371.10 1.20 -67.69 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: 0.52 Total: 34.15 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 7.98 Total: 21.41 kcal Atomic # 7 Polarization: -134.66 SS G_CDS: -7.65 Total: -142.32 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -1.67 Total: -27.81 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -68.89 1.20 -67.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995936143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.096 kcal (2) G-P(sol) polarization free energy of solvation -68.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds