Wall clock time and date at job start Tue Mar 31 2020 19:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 110.88326 * 2 1 4 4 C 1.55128 * 111.19428 * 236.07062 * 2 1 3 5 5 N 1.47428 * 104.72015 * 279.18857 * 4 2 1 6 6 C 1.34776 * 125.64624 * 155.81489 * 5 4 2 7 7 O 1.21666 * 120.00115 * 359.72357 * 6 5 4 8 8 C 1.46928 * 119.99891 * 179.71538 * 6 5 4 9 9 C 1.41703 * 126.56134 * 0.02562 * 8 6 5 10 10 N 1.30559 * 108.19326 * 179.97438 * 9 8 6 11 11 N 1.39354 * 109.06185 * 359.97367 * 10 9 8 12 12 C 1.35155 * 108.46435 * 0.06928 * 11 10 9 13 13 O 1.35582 * 123.90115 * 179.79769 * 12 11 10 14 14 C 1.43535 * 114.96993 * 344.50817 * 13 12 11 15 15 C 1.53257 * 109.22848 * 46.91617 * 14 13 12 16 16 C 1.46794 * 127.97736 * 180.12280 * 11 10 9 17 17 C 1.47025 * 108.70191 * 335.55598 * 5 4 2 18 18 C 1.54319 * 107.27445 * 1.28547 * 17 5 4 19 19 H 1.08994 * 110.72070 * 140.55824 * 18 17 5 20 20 N 1.46502 * 110.71944 * 263.65605 * 18 17 5 21 21 C 1.36930 * 119.99893 * 273.54158 * 20 18 17 22 22 H 1.08005 * 120.00035 * 0.02562 * 21 20 18 23 23 C 1.38811 * 120.00379 * 180.02562 * 21 20 18 24 24 N 1.31625 * 119.99737 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00430 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47277 * 60.00278 * 25 23 21 27 27 H 1.48506 * 109.47293 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47185 * 300.00226 * 25 23 21 29 29 H 1.09003 * 109.47285 * 296.11635 * 1 2 3 30 30 H 1.08994 * 109.47272 * 56.12050 * 1 2 3 31 31 H 1.09004 * 109.46617 * 176.12137 * 1 2 3 32 32 H 1.08996 * 109.46845 * 183.87633 * 3 2 1 33 33 H 1.08996 * 109.47176 * 303.87813 * 3 2 1 34 34 H 1.09006 * 109.47028 * 63.88151 * 3 2 1 35 35 H 1.08993 * 110.49882 * 160.35099 * 4 2 1 36 36 H 1.09002 * 110.34317 * 37.95015 * 4 2 1 37 37 H 1.07999 * 125.90235 * 359.97438 * 9 8 6 38 38 H 1.09002 * 109.51971 * 286.97381 * 14 13 12 39 39 H 1.09004 * 109.51776 * 166.85471 * 14 13 12 40 40 H 1.09003 * 109.50520 * 55.78165 * 15 14 13 41 41 H 1.09001 * 109.50652 * 175.87191 * 15 14 13 42 42 H 1.09007 * 109.75741 * 43.32316 * 16 11 10 43 43 H 1.09001 * 109.80147 * 282.59664 * 16 11 10 44 44 H 1.09000 * 109.88040 * 120.70390 * 17 5 4 45 45 H 1.08999 * 109.87841 * 241.71151 * 17 5 4 46 46 H 0.97002 * 119.99974 * 93.54448 * 20 18 17 47 47 H 0.97000 * 120.00155 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0909 -0.8073 -1.2001 5 7 2.0140 -2.2161 -0.7725 6 6 1.9472 -3.2834 -1.5928 7 8 1.9422 -3.1242 -2.7990 8 6 1.8807 -4.6392 -1.0305 9 6 1.8774 -4.9836 0.3441 10 7 1.8082 -6.2840 0.4382 11 7 1.7637 -6.8313 -0.8425 12 6 1.8094 -5.8227 -1.7409 13 8 1.7884 -6.0049 -3.0843 14 6 2.0620 -7.3455 -3.5182 15 6 1.2313 -8.3258 -2.6829 16 6 1.6803 -8.2483 -1.2169 17 6 2.0286 -2.2643 0.6969 18 6 2.0861 -0.8075 1.2026 19 1 1.4524 -0.6785 2.0799 20 7 3.4662 -0.4163 1.5004 21 6 4.0022 -0.6811 2.7323 22 1 3.4076 -1.1787 3.4843 23 6 5.3096 -0.3101 3.0148 24 7 6.0340 0.2967 2.0986 25 14 6.0410 -0.6720 4.6951 26 1 6.0236 -2.1370 4.9375 27 1 7.4409 -0.1785 4.7423 28 1 5.2399 0.0124 5.7414 29 1 -0.3634 0.4524 0.9228 30 1 -0.3633 0.5728 -0.8531 31 1 -0.3633 -1.0254 -0.0695 32 1 3.1629 1.4035 -0.0695 33 1 1.6698 1.9732 -0.8532 34 1 1.7823 1.9303 0.9228 35 1 3.1253 -0.5271 -1.3985 36 1 1.4765 -0.6456 -2.0858 37 1 1.9241 -4.2903 1.1708 38 1 3.1221 -7.5619 -3.3862 39 1 1.7975 -7.4487 -4.5706 40 1 0.1761 -8.0620 -2.7549 41 1 1.3795 -9.3389 -3.0567 42 1 0.9536 -8.7551 -0.5817 43 1 2.6576 -8.7178 -1.1055 44 1 1.1219 -2.7475 1.0609 45 1 2.9049 -2.8135 1.0410 46 1 4.0003 0.0303 0.8249 47 1 6.9478 0.5557 2.2958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996009931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:00 Heat of formation + Delta-G solvation = 36.628752 kcal Electronic energy + Delta-G solvation = -30046.186900 eV Core-core repulsion = 26039.040170 eV Total energy + Delta-G solvation = -4007.146730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.95828 -39.74863 -38.66240 -37.49786 -34.88922 -33.83757 -33.13069 -31.08922 -30.70122 -29.76093 -27.92065 -26.76577 -26.64513 -26.05265 -23.97606 -23.48991 -22.38394 -21.05563 -20.16096 -19.53504 -18.69853 -17.53235 -17.19487 -16.92543 -16.46706 -15.76622 -15.47175 -15.14291 -14.93590 -14.86652 -14.55049 -14.39572 -13.97670 -13.96995 -13.55324 -13.17605 -12.88356 -12.79885 -12.49299 -12.34528 -12.06747 -11.91487 -11.78254 -11.68967 -11.54390 -11.46855 -11.40136 -10.94041 -10.87879 -10.79368 -10.48740 -10.32959 -10.22658 -9.76647 -9.61775 -9.41462 -9.30702 -8.92994 -8.47086 -7.98416 -7.00515 -5.78967 -3.08587 1.55913 1.99009 2.28055 2.81485 3.43671 3.48429 3.49330 3.49779 3.80678 3.82816 3.99834 4.37516 4.44512 4.56536 4.75792 4.79542 4.86102 4.97496 5.06373 5.18199 5.19952 5.27474 5.33953 5.40953 5.49007 5.53233 5.69815 5.76892 5.83437 5.92105 5.99784 6.09130 6.20056 6.29997 6.31028 6.34814 6.40602 6.46768 6.49631 6.65810 6.82704 6.87424 7.00101 7.10276 7.52654 7.67907 8.09916 8.38981 8.74174 9.50902 10.06533 10.41263 11.43106 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012425 B = 0.003648 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.068220 B = 7674.466179 C = 9082.558489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 C -0.125 4.125 4 C 0.125 3.875 5 N -0.601 5.601 6 C 0.609 3.391 7 O -0.556 6.556 8 C -0.293 4.293 9 C 0.097 3.903 10 N -0.288 5.288 11 N -0.401 5.401 12 C 0.331 3.669 13 O -0.263 6.263 14 C 0.042 3.958 15 C -0.177 4.177 16 C 0.128 3.872 17 C 0.065 3.935 18 C 0.178 3.822 19 H 0.070 0.930 20 N -0.712 5.712 21 C -0.246 4.246 22 H 0.072 0.928 23 C -0.008 4.008 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.210 0.790 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.387 0.613 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.035 -14.596 -8.710 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 C -0.183 4.183 4 C 0.003 3.997 5 N -0.334 5.334 6 C 0.399 3.601 7 O -0.436 6.436 8 C -0.308 4.308 9 C -0.091 4.091 10 N -0.110 5.110 11 N -0.195 5.195 12 C 0.158 3.842 13 O -0.167 6.167 14 C -0.033 4.033 15 C -0.215 4.215 16 C 0.008 3.992 17 C -0.061 4.061 18 C 0.066 3.934 19 H 0.088 0.912 20 N -0.353 5.353 21 C -0.377 4.377 22 H 0.090 0.910 23 C -0.204 4.204 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.212 1.212 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.227 0.773 38 H 0.093 0.907 39 H 0.140 0.860 40 H 0.108 0.892 41 H 0.130 0.870 42 H 0.122 0.878 43 H 0.109 0.891 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.223 0.777 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.043 -15.584 -8.713 21.536 hybrid contribution 0.835 0.107 0.263 0.882 sum -11.208 -15.477 -8.450 20.894 Atomic orbital electron populations 1.21673 0.93996 1.01534 1.01464 1.22043 0.95257 0.96009 0.95761 1.21572 1.02078 0.93654 1.00960 1.22264 1.00873 0.79754 0.96850 1.48042 1.72330 1.05708 1.07284 1.16515 0.76225 0.82220 0.85112 1.90764 1.52785 1.86044 1.14016 1.19089 1.27666 0.91774 0.92264 1.24905 0.95180 0.92599 0.96428 1.77120 1.26780 1.10197 0.96883 1.49004 1.60059 1.06144 1.04302 1.19697 0.94421 0.88936 0.81114 1.86788 1.85500 1.29956 1.14462 1.23228 1.00018 0.79683 1.00375 1.22673 1.02256 1.02642 0.93943 1.21951 1.04007 0.77449 0.95803 1.23524 1.00370 1.02782 0.79400 1.21237 0.88644 0.89196 0.94307 0.91210 1.42443 1.08281 1.69981 1.14566 1.19177 0.95522 1.32469 0.90488 0.91015 1.24729 0.96853 1.01037 0.97804 1.69649 1.09453 1.45299 1.33256 0.86299 0.78216 0.77889 0.83933 1.21228 1.21801 1.21234 0.92385 0.92878 0.92773 0.91229 0.93673 0.92146 0.91361 0.91261 0.77346 0.90685 0.86003 0.89173 0.87039 0.87776 0.89102 0.92513 0.90170 0.77722 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.58 37.16 0.32 -1.41 16 2 C -0.09 -1.42 0.84 -152.24 -0.13 -1.55 16 3 C -0.12 -2.00 8.22 37.16 0.31 -1.70 16 4 C 0.12 2.19 5.83 -2.41 -0.01 2.17 16 5 N -0.60 -10.90 3.31 -171.83 -0.57 -11.47 16 6 C 0.61 11.89 7.83 -12.74 -0.10 11.79 16 7 O -0.56 -12.34 16.78 2.84 0.05 -12.30 16 8 C -0.29 -5.10 6.10 -105.06 -0.64 -5.74 16 9 C 0.10 1.52 10.45 -16.77 -0.18 1.34 16 10 N -0.29 -4.38 12.54 30.97 0.39 -3.99 16 11 N -0.40 -5.29 4.04 -60.43 -0.24 -5.54 16 12 C 0.33 5.14 7.50 -16.09 -0.12 5.02 16 13 O -0.26 -3.75 10.19 -20.82 -0.21 -3.96 16 14 C 0.04 0.34 7.01 37.29 0.26 0.60 16 15 C -0.18 -0.97 6.17 -26.33 -0.16 -1.13 16 16 C 0.13 0.99 7.41 -3.61 -0.03 0.96 16 17 C 0.07 1.12 4.40 -3.06 -0.01 1.11 16 18 C 0.18 3.26 2.86 -66.10 -0.19 3.08 16 19 H 0.07 1.25 8.02 -51.93 -0.42 0.83 16 20 N -0.71 -16.47 4.62 -51.65 -0.24 -16.71 16 21 C -0.25 -6.36 9.98 -15.06 -0.15 -6.51 16 22 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 24 N -0.93 -27.13 13.06 55.49 0.72 -26.41 16 25 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.73 7.91 -51.93 -0.41 0.32 16 32 H 0.07 1.29 6.39 -51.93 -0.33 0.96 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.30 7.99 -51.93 -0.41 0.89 16 36 H 0.07 1.18 7.95 -51.93 -0.41 0.77 16 37 H 0.21 3.00 4.48 -52.49 -0.24 2.77 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.11 0.23 8.14 -51.93 -0.42 -0.20 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.83 6.83 -51.93 -0.35 0.48 16 45 H 0.08 1.52 6.89 -51.93 -0.36 1.17 16 46 H 0.39 9.69 6.12 -40.82 -0.25 9.44 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -34.46 374.22 -7.37 -41.84 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.96 Total: 8.48 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -0.93 Total: 7.72 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: 0.06 Total: -64.11 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.16 Total: -16.25 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.46 -7.37 -41.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996009931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.465 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds