Wall clock time and date at job start Tue Mar 31 2020 19:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 110.88326 * 2 1 4 4 C 1.55128 * 111.19428 * 236.07062 * 2 1 3 5 5 N 1.47428 * 104.72015 * 279.18857 * 4 2 1 6 6 C 1.34776 * 125.64624 * 155.81489 * 5 4 2 7 7 O 1.21666 * 120.00115 * 359.72357 * 6 5 4 8 8 C 1.46928 * 119.99891 * 179.71538 * 6 5 4 9 9 C 1.41703 * 126.56134 * 0.02562 * 8 6 5 10 10 N 1.30559 * 108.19326 * 179.97438 * 9 8 6 11 11 N 1.39354 * 109.06185 * 359.97367 * 10 9 8 12 12 C 1.35155 * 108.46435 * 0.06928 * 11 10 9 13 13 O 1.35582 * 123.90115 * 179.79769 * 12 11 10 14 14 C 1.43535 * 114.96993 * 344.50817 * 13 12 11 15 15 C 1.53257 * 109.22848 * 46.91617 * 14 13 12 16 16 C 1.46794 * 127.97736 * 180.12280 * 11 10 9 17 17 C 1.47025 * 108.70191 * 335.55598 * 5 4 2 18 18 C 1.54319 * 107.27445 * 1.28547 * 17 5 4 19 19 H 1.08994 * 110.72070 * 140.55824 * 18 17 5 20 20 N 1.46502 * 110.71944 * 263.65605 * 18 17 5 21 21 C 1.36930 * 119.99893 * 273.54158 * 20 18 17 22 22 H 1.08005 * 120.00035 * 0.02562 * 21 20 18 23 23 C 1.38811 * 120.00379 * 180.02562 * 21 20 18 24 24 N 1.31625 * 119.99737 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00430 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47277 * 60.00278 * 25 23 21 27 27 H 1.48506 * 109.47293 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47185 * 300.00226 * 25 23 21 29 29 H 1.09003 * 109.47285 * 296.11635 * 1 2 3 30 30 H 1.08994 * 109.47272 * 56.12050 * 1 2 3 31 31 H 1.09004 * 109.46617 * 176.12137 * 1 2 3 32 32 H 1.08996 * 109.46845 * 183.87633 * 3 2 1 33 33 H 1.08996 * 109.47176 * 303.87813 * 3 2 1 34 34 H 1.09006 * 109.47028 * 63.88151 * 3 2 1 35 35 H 1.08993 * 110.49882 * 160.35099 * 4 2 1 36 36 H 1.09002 * 110.34317 * 37.95015 * 4 2 1 37 37 H 1.07999 * 125.90235 * 359.97438 * 9 8 6 38 38 H 1.09002 * 109.51971 * 286.97381 * 14 13 12 39 39 H 1.09004 * 109.51776 * 166.85471 * 14 13 12 40 40 H 1.09003 * 109.50520 * 55.78165 * 15 14 13 41 41 H 1.09001 * 109.50652 * 175.87191 * 15 14 13 42 42 H 1.09007 * 109.75741 * 43.32316 * 16 11 10 43 43 H 1.09001 * 109.80147 * 282.59664 * 16 11 10 44 44 H 1.09000 * 109.88040 * 120.70390 * 17 5 4 45 45 H 1.08999 * 109.87841 * 241.71151 * 17 5 4 46 46 H 0.97002 * 119.99974 * 93.54448 * 20 18 17 47 47 H 0.97000 * 120.00155 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0909 -0.8073 -1.2001 5 7 2.0140 -2.2161 -0.7725 6 6 1.9472 -3.2834 -1.5928 7 8 1.9422 -3.1242 -2.7990 8 6 1.8807 -4.6392 -1.0305 9 6 1.8774 -4.9836 0.3441 10 7 1.8082 -6.2840 0.4382 11 7 1.7637 -6.8313 -0.8425 12 6 1.8094 -5.8227 -1.7409 13 8 1.7884 -6.0049 -3.0843 14 6 2.0620 -7.3455 -3.5182 15 6 1.2313 -8.3258 -2.6829 16 6 1.6803 -8.2483 -1.2169 17 6 2.0286 -2.2643 0.6969 18 6 2.0861 -0.8075 1.2026 19 1 1.4524 -0.6785 2.0799 20 7 3.4662 -0.4163 1.5004 21 6 4.0022 -0.6811 2.7323 22 1 3.4076 -1.1787 3.4843 23 6 5.3096 -0.3101 3.0148 24 7 6.0340 0.2967 2.0986 25 14 6.0410 -0.6720 4.6951 26 1 6.0236 -2.1370 4.9375 27 1 7.4409 -0.1785 4.7423 28 1 5.2399 0.0124 5.7414 29 1 -0.3634 0.4524 0.9228 30 1 -0.3633 0.5728 -0.8531 31 1 -0.3633 -1.0254 -0.0695 32 1 3.1629 1.4035 -0.0695 33 1 1.6698 1.9732 -0.8532 34 1 1.7823 1.9303 0.9228 35 1 3.1253 -0.5271 -1.3985 36 1 1.4765 -0.6456 -2.0858 37 1 1.9241 -4.2903 1.1708 38 1 3.1221 -7.5619 -3.3862 39 1 1.7975 -7.4487 -4.5706 40 1 0.1761 -8.0620 -2.7549 41 1 1.3795 -9.3389 -3.0567 42 1 0.9536 -8.7551 -0.5817 43 1 2.6576 -8.7178 -1.1055 44 1 1.1219 -2.7475 1.0609 45 1 2.9049 -2.8135 1.0410 46 1 4.0003 0.0303 0.8249 47 1 6.9478 0.5557 2.2958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996009931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:59 Heat of formation + Delta-G solvation = 11.833304 kcal Electronic energy + Delta-G solvation = -30047.262111 eV Core-core repulsion = 26039.040170 eV Total energy + Delta-G solvation = -4008.221941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.01595 -41.14916 -39.67262 -38.99396 -35.70931 -35.64789 -34.55176 -32.56518 -31.97764 -30.93594 -29.45615 -27.97684 -27.76478 -27.11745 -25.76452 -24.45669 -23.77890 -22.41314 -21.08811 -20.66908 -20.14909 -19.03110 -18.61469 -18.09180 -17.52659 -17.08693 -16.77079 -16.37408 -16.09837 -15.87819 -15.85596 -15.65454 -15.45202 -15.18555 -14.97643 -14.49610 -14.32453 -14.11172 -13.69343 -13.44471 -13.23306 -13.18814 -12.96057 -12.76783 -12.73599 -12.70543 -12.60364 -12.57770 -12.17627 -12.14651 -12.03211 -11.86537 -11.71944 -11.39855 -11.22405 -10.94961 -10.80632 -10.32106 -9.77547 -9.38105 -8.94314 -7.86500 -5.14311 0.40724 1.03142 1.05373 1.53206 1.54952 1.60301 1.95515 2.12355 2.40217 2.62207 3.11628 3.44741 3.46571 3.48127 3.68382 3.86324 3.86995 3.94095 3.95821 4.04769 4.10094 4.18939 4.23844 4.37519 4.47078 4.51116 4.52036 4.55398 4.68689 4.70210 4.84950 4.86575 4.93803 4.95098 5.04536 5.07213 5.14039 5.16907 5.28327 5.36296 5.42971 5.48389 5.60343 5.66469 6.12518 6.34390 6.39141 6.64186 7.26090 7.42287 8.16947 8.40095 9.36766 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012425 B = 0.003648 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.068220 B = 7674.466179 C = 9082.558489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 C -0.119 4.119 4 C 0.124 3.876 5 N -0.601 5.601 6 C 0.604 3.396 7 O -0.594 6.594 8 C -0.332 4.332 9 C 0.096 3.904 10 N -0.298 5.298 11 N -0.391 5.391 12 C 0.334 3.666 13 O -0.291 6.291 14 C 0.026 3.974 15 C -0.162 4.162 16 C 0.112 3.888 17 C 0.076 3.924 18 C 0.170 3.830 19 H 0.084 0.916 20 N -0.722 5.722 21 C -0.233 4.233 22 H 0.085 0.915 23 C -0.073 4.073 24 N -0.970 5.970 25 Si 0.966 3.034 26 H -0.280 1.280 27 H -0.304 1.304 28 H -0.276 1.276 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.216 0.784 38 H 0.081 0.919 39 H 0.148 0.852 40 H 0.086 0.914 41 H 0.157 0.843 42 H 0.123 0.877 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.374 0.626 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.143 -16.917 -8.373 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.077 4.077 3 C -0.177 4.177 4 C 0.001 3.999 5 N -0.333 5.333 6 C 0.396 3.604 7 O -0.477 6.477 8 C -0.347 4.347 9 C -0.092 4.092 10 N -0.120 5.120 11 N -0.185 5.185 12 C 0.159 3.841 13 O -0.195 6.195 14 C -0.047 4.047 15 C -0.200 4.200 16 C -0.007 4.007 17 C -0.049 4.049 18 C 0.060 3.940 19 H 0.102 0.898 20 N -0.362 5.362 21 C -0.365 4.365 22 H 0.103 0.897 23 C -0.265 4.265 24 N -0.621 5.621 25 Si 0.796 3.204 26 H -0.206 1.206 27 H -0.231 1.231 28 H -0.202 1.202 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.232 0.768 38 H 0.100 0.900 39 H 0.166 0.834 40 H 0.105 0.895 41 H 0.175 0.825 42 H 0.141 0.859 43 H 0.127 0.873 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.208 0.792 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.211 -17.957 -8.353 24.376 hybrid contribution 1.432 0.679 0.030 1.585 sum -12.779 -17.278 -8.323 23.046 Atomic orbital electron populations 1.21634 0.91219 1.02084 1.03021 1.22001 0.97149 0.95146 0.93420 1.21503 1.00081 0.94086 1.02018 1.22262 0.99650 0.80000 0.97957 1.48096 1.71844 1.05717 1.07598 1.16897 0.75534 0.83219 0.84779 1.90719 1.54797 1.86693 1.15471 1.19095 1.30632 0.91456 0.93482 1.24895 0.95340 0.93014 0.95909 1.77034 1.26816 1.09875 0.98270 1.49409 1.58336 1.07672 1.03081 1.19720 0.93274 0.89103 0.82045 1.86766 1.85205 1.33887 1.13664 1.23740 1.01162 0.77636 1.02211 1.22691 1.01243 1.04220 0.91885 1.22567 1.05869 0.74599 0.97616 1.23369 1.01036 1.01699 0.78845 1.21500 0.86468 0.90154 0.95857 0.89839 1.42609 1.10078 1.69993 1.13521 1.19629 0.95384 1.30072 0.91404 0.89713 1.25457 0.97769 1.02335 1.00933 1.69819 1.09295 1.47803 1.35145 0.85320 0.76752 0.77775 0.80551 1.20642 1.23112 1.20217 0.90837 0.91337 0.92739 0.94396 0.91193 0.92178 0.93910 0.90761 0.76838 0.90024 0.83448 0.89516 0.82519 0.85871 0.87251 0.89308 0.92173 0.79196 0.94391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.97 8.58 71.98 0.62 -2.35 16 2 C -0.08 -2.35 0.84 -50.71 -0.04 -2.40 16 3 C -0.12 -3.78 8.22 71.98 0.59 -3.19 16 4 C 0.12 4.41 5.83 86.93 0.51 4.92 16 5 N -0.60 -22.11 3.31 -815.77 -2.70 -24.81 16 6 C 0.60 24.18 7.83 86.52 0.68 24.85 16 7 O -0.59 -27.25 16.78 -1.97 -0.03 -27.28 16 8 C -0.33 -11.66 6.10 -20.15 -0.12 -11.79 16 9 C 0.10 2.99 10.45 85.74 0.90 3.88 16 10 N -0.30 -8.72 12.54 -55.94 -0.70 -9.42 16 11 N -0.39 -9.69 4.04 -456.50 -1.84 -11.54 16 12 C 0.33 10.23 7.50 84.18 0.63 10.86 16 13 O -0.29 -8.13 10.19 -86.63 -0.88 -9.02 16 14 C 0.03 0.36 7.01 72.07 0.51 0.86 16 15 C -0.16 -1.20 6.17 30.85 0.19 -1.01 16 16 C 0.11 1.37 7.41 86.50 0.64 2.01 16 17 C 0.08 2.57 4.40 86.73 0.38 2.95 16 18 C 0.17 6.13 2.86 46.18 0.13 6.26 16 19 H 0.08 2.82 8.02 -2.39 -0.02 2.80 16 20 N -0.72 -33.90 4.62 -317.34 -1.47 -35.37 16 21 C -0.23 -12.09 9.98 84.03 0.84 -11.25 16 22 H 0.09 4.09 7.83 -2.91 -0.02 4.07 16 23 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 24 N -0.97 -58.53 13.06 21.65 0.28 -58.25 16 25 Si 0.97 45.15 29.55 68.60 2.03 47.18 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 27 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 28 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.34 7.91 -2.38 -0.02 1.32 16 32 H 0.04 1.44 6.39 -2.39 -0.02 1.43 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.04 1.73 7.99 -2.39 -0.02 1.71 16 36 H 0.07 2.55 7.95 -2.39 -0.02 2.54 16 37 H 0.22 6.07 4.48 -2.91 -0.01 6.06 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.15 1.18 8.14 -2.38 -0.02 1.17 16 40 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.16 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.12 1.09 8.14 -2.38 -0.02 1.08 16 43 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.09 2.46 6.83 -2.39 -0.02 2.45 16 45 H 0.06 2.31 6.89 -2.39 -0.02 2.29 16 46 H 0.37 19.49 6.12 -92.71 -0.57 18.93 16 47 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -78.04 374.22 2.02 -76.02 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.43 Total: 31.45 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 6.91 Total: 21.05 kcal Atomic # 7 Polarization: -132.95 SS G_CDS: -6.43 Total: -139.38 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.92 Total: -36.30 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -78.04 2.02 -76.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996009931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.851 kcal (2) G-P(sol) polarization free energy of solvation -78.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds