Wall clock time and date at job start Tue Mar 31 2020 19:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34265 * 125.38807 * 2 1 4 4 C 1.38211 * 108.39110 * 180.02562 * 3 2 1 5 5 C 1.47394 * 126.46034 * 179.97438 * 4 3 2 6 6 N 1.34785 * 119.99789 * 359.74123 * 5 4 3 7 7 O 1.21608 * 120.00378 * 180.02562 * 5 4 3 8 8 C 1.41298 * 107.07671 * 0.22379 * 4 3 2 9 9 C 1.36350 * 107.01169 * 359.63613 * 8 4 3 10 10 C 1.46814 * 125.84927 * 180.13494 * 9 8 4 11 11 O 1.21683 * 119.99967 * 174.04210 * 10 9 8 12 12 N 1.34769 * 120.00124 * 354.03740 * 10 9 8 13 13 C 1.47028 * 125.64984 * 4.72144 * 12 10 9 14 14 C 1.54318 * 107.27302 * 181.02092 * 13 12 10 15 15 H 1.08992 * 110.72177 * 263.82874 * 14 13 12 16 16 N 1.46498 * 110.71791 * 140.55411 * 14 13 12 17 17 C 1.36937 * 120.00409 * 86.45518 * 16 14 13 18 18 H 1.08005 * 119.99472 * 359.97438 * 17 16 14 19 19 C 1.38804 * 120.00679 * 179.97438 * 17 16 14 20 20 N 1.31622 * 119.99777 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00433 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46849 * 90.00128 * 21 19 17 23 23 H 1.48492 * 109.47472 * 210.00159 * 21 19 17 24 24 H 1.48500 * 109.47043 * 330.00518 * 21 19 17 25 25 C 1.55161 * 102.94348 * 22.19399 * 14 13 12 26 26 C 1.52999 * 111.00507 * 82.57134 * 25 14 13 27 27 C 1.52999 * 111.00316 * 206.38641 * 25 14 13 28 28 C 1.47426 * 125.64998 * 184.40989 * 12 10 9 29 29 H 1.09001 * 109.47046 * 95.68286 * 1 2 3 30 30 H 1.09004 * 109.47006 * 215.68234 * 1 2 3 31 31 H 1.09004 * 109.47247 * 335.67891 * 1 2 3 32 32 H 1.08000 * 125.80358 * 359.96099 * 3 2 1 33 33 H 0.97000 * 119.99611 * 180.27828 * 6 5 4 34 34 H 0.96998 * 119.99650 * 0.28728 * 6 5 4 35 35 H 1.07997 * 126.49533 * 179.77529 * 8 4 3 36 36 H 1.09005 * 109.87688 * 300.43956 * 13 12 10 37 37 H 1.08999 * 109.88195 * 61.59806 * 13 12 10 38 38 H 0.97003 * 119.99881 * 266.44933 * 16 14 13 39 39 H 0.96998 * 119.99863 * 179.97438 * 20 19 17 40 40 H 1.08995 * 109.47238 * 60.00074 * 26 25 14 41 41 H 1.08996 * 109.46984 * 180.02562 * 26 25 14 42 42 H 1.08999 * 109.46793 * 299.99859 * 26 25 14 43 43 H 1.09002 * 109.47086 * 59.99605 * 27 25 14 44 44 H 1.08997 * 109.47196 * 179.97438 * 27 25 14 45 45 H 1.09003 * 109.47093 * 299.99644 * 27 25 14 46 46 H 1.08998 * 110.36703 * 274.74840 * 28 12 10 47 47 H 1.08998 * 110.36376 * 37.07337 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2426 1.0946 0.0000 4 6 3.5643 0.6906 -0.0006 5 6 4.7485 1.5682 -0.0013 6 7 4.5949 2.9072 -0.0067 7 8 5.8641 1.0842 -0.0023 8 6 3.5663 -0.7224 -0.0062 9 6 2.2630 -1.1232 -0.0006 10 6 1.7909 -2.5133 -0.0007 11 8 0.6034 -2.7526 0.1141 12 7 2.6728 -3.5244 -0.1280 13 6 4.1357 -3.3847 -0.1760 14 6 4.7255 -4.7996 -0.3538 15 1 5.0175 -5.2195 0.6087 16 7 5.8630 -4.7747 -1.2766 17 6 7.1196 -4.4992 -0.8073 18 1 7.2720 -4.3000 0.2433 19 6 8.1976 -4.4761 -1.6814 20 7 8.0118 -4.7184 -2.9618 21 14 9.9116 -4.0996 -1.0412 22 1 10.5801 -5.3645 -0.6433 23 1 10.7034 -3.4354 -2.1074 24 1 9.8136 -3.1999 0.1361 25 6 3.5414 -5.5956 -0.9636 26 6 3.4558 -5.3790 -2.4757 27 6 3.6530 -7.0850 -0.6314 28 6 2.3308 -4.9544 -0.2357 29 1 -0.3633 -0.1018 -1.0226 30 1 -0.3633 -0.8348 0.5995 31 1 -0.3634 0.9365 0.4233 32 1 1.8944 2.1169 -0.0006 33 1 5.3742 3.4848 -0.0113 34 1 3.7050 3.2933 -0.0059 35 1 4.4354 -1.3635 -0.0115 36 1 4.4204 -2.7556 -1.0194 37 1 4.4969 -2.9467 0.7544 38 1 5.7261 -4.9533 -2.2202 39 1 8.7650 -4.7019 -3.5727 40 1 4.3808 -5.7152 -2.9439 41 1 2.6172 -5.9478 -2.8773 42 1 3.3079 -4.3191 -2.6830 43 1 3.6431 -7.2176 0.4505 44 1 2.8105 -7.6193 -1.0703 45 1 4.5848 -7.4790 -1.0372 46 1 2.2067 -5.3905 0.7556 47 1 1.4227 -5.0839 -0.8244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996013058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:42 Heat of formation + Delta-G solvation = 2.749430 kcal Electronic energy + Delta-G solvation = -29943.242750 eV Core-core repulsion = 25934.626903 eV Total energy + Delta-G solvation = -4008.615848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.73208 -39.78293 -38.78303 -37.68155 -34.28046 -33.66289 -33.47603 -32.57094 -30.79512 -29.70442 -27.68551 -27.01809 -26.94846 -26.11376 -24.08510 -23.09779 -22.22120 -20.86314 -19.98626 -19.14154 -18.66874 -17.48184 -17.19251 -16.82466 -16.08490 -16.00116 -15.87996 -15.45244 -15.07910 -14.53878 -14.32585 -14.03435 -13.92524 -13.82056 -13.60157 -13.44215 -13.00883 -12.77289 -12.59648 -12.49660 -12.38864 -12.27420 -12.03286 -11.85715 -11.50918 -11.09151 -10.97518 -10.82136 -10.53290 -10.40210 -10.15831 -10.02061 -9.89330 -9.78678 -9.65483 -9.58415 -8.91585 -8.88089 -8.53584 -8.24333 -7.01555 -5.77492 -3.07642 1.41753 1.86235 2.43046 3.28702 3.34171 3.48170 3.54833 3.57005 3.65172 3.68006 4.51717 4.56294 4.59967 4.64611 4.94770 5.02361 5.07549 5.09772 5.19594 5.20879 5.40814 5.54230 5.62248 5.72903 5.78289 5.82331 5.83304 5.96171 6.02478 6.04615 6.14574 6.25313 6.34759 6.36657 6.40584 6.49031 6.62374 6.66621 6.74292 6.77247 6.81417 6.92130 6.95938 7.39767 7.70576 7.74582 8.26990 8.40774 8.41523 9.53503 10.05817 10.40660 11.44624 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008777 B = 0.004849 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.385160 B = 5773.419906 C = 8535.245126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.399 5.399 3 C 0.057 3.943 4 C -0.235 4.235 5 C 0.590 3.410 6 N -0.859 5.859 7 O -0.533 6.533 8 C -0.082 4.082 9 C -0.052 4.052 10 C 0.600 3.400 11 O -0.566 6.566 12 N -0.595 5.595 13 C 0.063 3.937 14 C 0.180 3.820 15 H 0.067 0.933 16 N -0.710 5.710 17 C -0.247 4.247 18 H 0.072 0.928 19 C -0.005 4.005 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.279 1.279 25 C -0.086 4.086 26 C -0.133 4.133 27 C -0.129 4.129 28 C 0.123 3.877 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.176 0.824 33 H 0.402 0.598 34 H 0.395 0.605 35 H 0.175 0.825 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.390 0.610 39 H 0.256 0.744 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.699 10.396 5.569 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.071 5.071 3 C -0.084 4.084 4 C -0.246 4.246 5 C 0.377 3.623 6 N -0.423 5.423 7 O -0.409 6.409 8 C -0.107 4.107 9 C -0.162 4.162 10 C 0.390 3.610 11 O -0.448 6.448 12 N -0.326 5.326 13 C -0.063 4.063 14 C 0.068 3.932 15 H 0.085 0.915 16 N -0.352 5.352 17 C -0.378 4.378 18 H 0.090 0.910 19 C -0.202 4.202 20 N -0.578 5.578 21 Si 0.736 3.264 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.204 1.204 25 C -0.088 4.088 26 C -0.190 4.190 27 C -0.186 4.186 28 C 0.000 4.000 29 H 0.097 0.903 30 H 0.124 0.876 31 H 0.102 0.898 32 H 0.193 0.807 33 H 0.232 0.768 34 H 0.223 0.777 35 H 0.192 0.808 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.227 0.773 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.911 9.777 5.694 20.347 hybrid contribution 0.767 0.993 -0.035 1.255 sum -16.144 10.770 5.659 20.215 Atomic orbital electron populations 1.22349 0.75668 1.05011 1.04607 1.43529 1.07165 1.04853 1.51530 1.22309 0.89898 0.91745 1.04471 1.19593 0.91583 0.94569 1.18823 1.17449 0.88075 0.81757 0.75039 1.43678 1.11881 1.07089 1.79652 1.90898 1.25739 1.74993 1.49279 1.22097 0.96079 0.94204 0.98292 1.19678 0.89972 0.87667 1.18925 1.16529 0.84735 0.82767 0.76945 1.90730 1.15844 1.84988 1.53206 1.48093 1.07961 1.06298 1.70268 1.23803 0.77239 1.03424 1.01811 1.21239 0.87284 0.90123 0.94604 0.91486 1.42528 1.02006 1.83466 1.07181 1.19247 0.84355 1.40619 0.93564 0.90962 1.24714 0.98058 1.02007 0.95406 1.69652 1.30528 1.55625 1.01990 0.86209 0.84544 0.77770 0.77841 1.21770 1.21772 1.20449 1.22035 0.94724 0.95824 0.96183 1.21650 1.01987 1.01563 0.93797 1.21645 1.02231 0.93690 1.01066 1.22381 0.98242 0.79263 1.00111 0.90294 0.87632 0.89754 0.80720 0.76756 0.77741 0.80825 0.89798 0.91520 0.77296 0.93427 0.90759 0.93324 0.92744 0.92772 0.93107 0.91217 0.91375 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 10.45 59.85 0.63 1.18 16 2 N -0.40 -4.74 3.12 -120.12 -0.38 -5.11 16 3 C 0.06 0.58 10.87 -16.50 -0.18 0.40 16 4 C -0.24 -3.28 6.13 -105.02 -0.64 -3.92 16 5 C 0.59 8.59 8.09 -12.53 -0.10 8.49 16 6 N -0.86 -7.58 8.86 30.43 0.27 -7.31 16 7 O -0.53 -10.66 17.76 5.27 0.09 -10.57 16 8 C -0.08 -1.33 9.08 -39.10 -0.35 -1.69 16 9 C -0.05 -0.79 6.80 -82.41 -0.56 -1.35 16 10 C 0.60 10.03 7.81 -12.80 -0.10 9.93 16 11 O -0.57 -10.03 14.98 5.20 0.08 -9.95 16 12 N -0.60 -9.74 3.31 -171.87 -0.57 -10.31 16 13 C 0.06 1.12 4.41 -3.06 -0.01 1.10 16 14 C 0.18 3.38 2.85 -66.10 -0.19 3.19 16 15 H 0.07 1.27 8.02 -51.93 -0.42 0.85 16 16 N -0.71 -16.71 5.08 -51.66 -0.26 -16.97 16 17 C -0.25 -6.61 9.98 -15.06 -0.15 -6.76 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 20 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 21 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 C -0.09 -1.35 0.87 -152.24 -0.13 -1.48 16 26 C -0.13 -2.15 7.94 37.16 0.30 -1.86 16 27 C -0.13 -1.80 8.68 37.16 0.32 -1.48 16 28 C 0.12 1.82 5.83 -2.41 -0.01 1.81 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.11 1.11 6.46 -51.93 -0.34 0.78 16 31 H 0.08 0.42 8.11 -51.93 -0.42 0.00 16 32 H 0.18 0.86 7.44 -52.49 -0.39 0.47 16 33 H 0.40 3.12 8.93 -40.82 -0.36 2.76 16 34 H 0.39 1.98 7.74 -40.82 -0.32 1.67 16 35 H 0.17 3.16 4.34 -52.49 -0.23 2.93 16 36 H 0.08 1.67 6.64 -51.93 -0.34 1.32 16 37 H 0.07 1.18 7.07 -51.93 -0.37 0.81 16 38 H 0.39 9.69 5.26 -40.82 -0.21 9.48 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.07 1.36 6.34 -51.93 -0.33 1.03 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.94 7.91 -51.93 -0.41 0.53 16 43 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.07 0.94 7.99 -51.93 -0.41 0.52 16 47 H 0.07 1.09 8.00 -51.93 -0.42 0.67 16 LS Contribution 379.33 15.07 5.72 5.72 Total: -1.00 -35.41 379.33 -7.26 -42.67 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -6.62 Total: 13.78 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -1.29 Total: 7.31 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -0.21 Total: -66.48 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.17 Total: -20.52 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.41 -7.26 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996013058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.422 kcal (2) G-P(sol) polarization free energy of solvation -35.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds