Wall clock time and date at job start Tue Mar 31 2020 19:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34265 * 125.38807 * 2 1 4 4 C 1.38211 * 108.39110 * 180.02562 * 3 2 1 5 5 C 1.47394 * 126.46034 * 179.97438 * 4 3 2 6 6 N 1.34785 * 119.99789 * 359.74123 * 5 4 3 7 7 O 1.21608 * 120.00378 * 180.02562 * 5 4 3 8 8 C 1.41298 * 107.07671 * 0.22379 * 4 3 2 9 9 C 1.36350 * 107.01169 * 359.63613 * 8 4 3 10 10 C 1.46814 * 125.84927 * 180.13494 * 9 8 4 11 11 O 1.21683 * 119.99967 * 174.04210 * 10 9 8 12 12 N 1.34769 * 120.00124 * 354.03740 * 10 9 8 13 13 C 1.47028 * 125.64984 * 4.72144 * 12 10 9 14 14 C 1.54318 * 107.27302 * 181.02092 * 13 12 10 15 15 H 1.08992 * 110.72177 * 263.82874 * 14 13 12 16 16 N 1.46498 * 110.71791 * 140.55411 * 14 13 12 17 17 C 1.36937 * 120.00409 * 86.45518 * 16 14 13 18 18 H 1.08005 * 119.99472 * 359.97438 * 17 16 14 19 19 C 1.38804 * 120.00679 * 179.97438 * 17 16 14 20 20 N 1.31622 * 119.99777 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00433 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46849 * 90.00128 * 21 19 17 23 23 H 1.48492 * 109.47472 * 210.00159 * 21 19 17 24 24 H 1.48500 * 109.47043 * 330.00518 * 21 19 17 25 25 C 1.55161 * 102.94348 * 22.19399 * 14 13 12 26 26 C 1.52999 * 111.00507 * 82.57134 * 25 14 13 27 27 C 1.52999 * 111.00316 * 206.38641 * 25 14 13 28 28 C 1.47426 * 125.64998 * 184.40989 * 12 10 9 29 29 H 1.09001 * 109.47046 * 95.68286 * 1 2 3 30 30 H 1.09004 * 109.47006 * 215.68234 * 1 2 3 31 31 H 1.09004 * 109.47247 * 335.67891 * 1 2 3 32 32 H 1.08000 * 125.80358 * 359.96099 * 3 2 1 33 33 H 0.97000 * 119.99611 * 180.27828 * 6 5 4 34 34 H 0.96998 * 119.99650 * 0.28728 * 6 5 4 35 35 H 1.07997 * 126.49533 * 179.77529 * 8 4 3 36 36 H 1.09005 * 109.87688 * 300.43956 * 13 12 10 37 37 H 1.08999 * 109.88195 * 61.59806 * 13 12 10 38 38 H 0.97003 * 119.99881 * 266.44933 * 16 14 13 39 39 H 0.96998 * 119.99863 * 179.97438 * 20 19 17 40 40 H 1.08995 * 109.47238 * 60.00074 * 26 25 14 41 41 H 1.08996 * 109.46984 * 180.02562 * 26 25 14 42 42 H 1.08999 * 109.46793 * 299.99859 * 26 25 14 43 43 H 1.09002 * 109.47086 * 59.99605 * 27 25 14 44 44 H 1.08997 * 109.47196 * 179.97438 * 27 25 14 45 45 H 1.09003 * 109.47093 * 299.99644 * 27 25 14 46 46 H 1.08998 * 110.36703 * 274.74840 * 28 12 10 47 47 H 1.08998 * 110.36376 * 37.07337 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2426 1.0946 0.0000 4 6 3.5643 0.6906 -0.0006 5 6 4.7485 1.5682 -0.0013 6 7 4.5949 2.9072 -0.0067 7 8 5.8641 1.0842 -0.0023 8 6 3.5663 -0.7224 -0.0062 9 6 2.2630 -1.1232 -0.0006 10 6 1.7909 -2.5133 -0.0007 11 8 0.6034 -2.7526 0.1141 12 7 2.6728 -3.5244 -0.1280 13 6 4.1357 -3.3847 -0.1760 14 6 4.7255 -4.7996 -0.3538 15 1 5.0175 -5.2195 0.6087 16 7 5.8630 -4.7747 -1.2766 17 6 7.1196 -4.4992 -0.8073 18 1 7.2720 -4.3000 0.2433 19 6 8.1976 -4.4761 -1.6814 20 7 8.0118 -4.7184 -2.9618 21 14 9.9116 -4.0996 -1.0412 22 1 10.5801 -5.3645 -0.6433 23 1 10.7034 -3.4354 -2.1074 24 1 9.8136 -3.1999 0.1361 25 6 3.5414 -5.5956 -0.9636 26 6 3.4558 -5.3790 -2.4757 27 6 3.6530 -7.0850 -0.6314 28 6 2.3308 -4.9544 -0.2357 29 1 -0.3633 -0.1018 -1.0226 30 1 -0.3633 -0.8348 0.5995 31 1 -0.3634 0.9365 0.4233 32 1 1.8944 2.1169 -0.0006 33 1 5.3742 3.4848 -0.0113 34 1 3.7050 3.2933 -0.0059 35 1 4.4354 -1.3635 -0.0115 36 1 4.4204 -2.7556 -1.0194 37 1 4.4969 -2.9467 0.7544 38 1 5.7261 -4.9533 -2.2202 39 1 8.7650 -4.7019 -3.5727 40 1 4.3808 -5.7152 -2.9439 41 1 2.6172 -5.9478 -2.8773 42 1 3.3079 -4.3191 -2.6830 43 1 3.6431 -7.2176 0.4505 44 1 2.8105 -7.6193 -1.0703 45 1 4.5848 -7.4790 -1.0372 46 1 2.2067 -5.3905 0.7556 47 1 1.4227 -5.0839 -0.8244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996013058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:41 Heat of formation + Delta-G solvation = -24.701046 kcal Electronic energy + Delta-G solvation = -29944.433092 eV Core-core repulsion = 25934.626903 eV Total energy + Delta-G solvation = -4009.806190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.78414 -41.10886 -39.94156 -39.03369 -35.94115 -34.94382 -34.70467 -33.61858 -32.68232 -30.79371 -29.31917 -28.29651 -27.85444 -27.30196 -25.93790 -24.35796 -23.41979 -22.22412 -21.09656 -20.34052 -19.96096 -19.14990 -18.52639 -17.95623 -17.34271 -17.24948 -16.84764 -16.66334 -16.32720 -16.15785 -15.71896 -15.49125 -15.28469 -15.12570 -14.83971 -14.67934 -14.34889 -14.25119 -13.87856 -13.70552 -13.47706 -13.27878 -13.19172 -13.09914 -12.90909 -12.83358 -12.80455 -12.44322 -12.11415 -12.09137 -11.81390 -11.52252 -11.35121 -11.23209 -11.10583 -10.87428 -10.63932 -9.93065 -9.79707 -9.36976 -9.02568 -7.93643 -5.21581 0.36337 0.75271 1.42691 1.47391 1.50297 1.57561 2.11123 2.14752 2.55301 2.57948 2.74369 3.29261 3.37952 3.66166 3.76269 3.78109 3.83197 3.90432 4.14942 4.19899 4.25861 4.32022 4.37769 4.41335 4.43093 4.61716 4.70776 4.76034 4.78136 4.82236 4.86441 4.98165 5.00984 5.08236 5.10722 5.20052 5.24149 5.42344 5.44635 5.52624 5.55961 5.64828 5.96975 6.10425 6.28532 6.37371 6.60080 6.97495 7.37430 7.47187 8.09218 8.33477 9.29444 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008777 B = 0.004849 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.385160 B = 5773.419906 C = 8535.245126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.396 5.396 3 C 0.108 3.892 4 C -0.270 4.270 5 C 0.587 3.413 6 N -0.828 5.828 7 O -0.604 6.604 8 C -0.105 4.105 9 C -0.076 4.076 10 C 0.598 3.402 11 O -0.576 6.576 12 N -0.597 5.597 13 C 0.085 3.915 14 C 0.171 3.829 15 H 0.069 0.931 16 N -0.719 5.719 17 C -0.239 4.239 18 H 0.075 0.925 19 C -0.065 4.065 20 N -0.965 5.965 21 Si 0.962 3.038 22 H -0.283 1.283 23 H -0.299 1.299 24 H -0.276 1.276 25 C -0.077 4.077 26 C -0.126 4.126 27 C -0.123 4.123 28 C 0.126 3.874 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.241 0.759 33 H 0.410 0.590 34 H 0.418 0.582 35 H 0.141 0.859 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.381 0.619 39 H 0.250 0.750 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.036 0.964 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.047 0.953 46 H 0.086 0.914 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.719 12.273 6.729 24.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.067 5.067 3 C -0.035 4.035 4 C -0.279 4.279 5 C 0.375 3.625 6 N -0.392 5.392 7 O -0.486 6.486 8 C -0.131 4.131 9 C -0.187 4.187 10 C 0.389 3.611 11 O -0.459 6.459 12 N -0.328 5.328 13 C -0.041 4.041 14 C 0.060 3.940 15 H 0.087 0.913 16 N -0.360 5.360 17 C -0.371 4.371 18 H 0.092 0.908 19 C -0.258 4.258 20 N -0.615 5.615 21 Si 0.792 3.208 22 H -0.209 1.209 23 H -0.225 1.225 24 H -0.202 1.202 25 C -0.078 4.078 26 C -0.183 4.183 27 C -0.181 4.181 28 C 0.004 3.996 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.152 0.848 32 H 0.257 0.743 33 H 0.242 0.758 34 H 0.250 0.750 35 H 0.158 0.842 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.217 0.783 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.066 0.934 46 H 0.104 0.896 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.025 11.692 6.897 24.193 hybrid contribution 1.548 0.525 -0.353 1.672 sum -18.477 12.218 6.544 23.097 Atomic orbital electron populations 1.22609 0.73304 1.06865 1.05104 1.43826 1.08482 1.04054 1.50317 1.23142 0.87793 0.93588 0.99008 1.19634 0.93394 0.93462 1.21414 1.17650 0.87203 0.83346 0.74311 1.43360 1.13721 1.05069 1.77028 1.90861 1.28204 1.76537 1.53028 1.21921 0.95727 0.95740 0.99676 1.19451 0.90207 0.88157 1.20856 1.16750 0.84526 0.83357 0.76485 1.90714 1.15985 1.85318 1.53909 1.48087 1.07025 1.07193 1.70537 1.23289 0.78491 1.01850 1.00429 1.21450 0.87213 0.91237 0.94061 0.91318 1.42616 1.02430 1.83493 1.07494 1.19581 0.85681 1.38289 0.93576 0.90751 1.25394 1.01274 1.03408 0.95739 1.69787 1.30906 1.57906 1.02931 0.85306 0.80899 0.77636 0.76974 1.20942 1.22540 1.20171 1.21982 0.93389 0.96815 0.95622 1.21573 1.01757 1.00713 0.94284 1.21612 1.02221 0.92102 1.02161 1.22462 0.97796 0.78295 1.01061 0.89651 0.89677 0.84835 0.74303 0.75804 0.74992 0.84173 0.92544 0.92035 0.78263 0.94079 0.93290 0.90466 0.94521 0.91310 0.90421 0.93409 0.89588 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.81 10.45 127.77 1.33 2.15 16 2 N -0.40 -8.25 3.12 -533.95 -1.67 -9.92 16 3 C 0.11 1.74 10.87 84.31 0.92 2.65 16 4 C -0.27 -7.28 6.13 -20.12 -0.12 -7.40 16 5 C 0.59 16.94 8.09 86.65 0.70 17.64 16 6 N -0.83 -12.51 8.86 -175.90 -1.56 -14.07 16 7 O -0.60 -25.43 17.76 -4.06 -0.07 -25.50 16 8 C -0.10 -3.56 9.08 22.58 0.20 -3.36 16 9 C -0.08 -2.32 6.80 40.01 0.27 -2.04 16 10 C 0.60 19.89 7.81 86.49 0.68 20.57 16 11 O -0.58 -19.84 14.98 -4.29 -0.06 -19.90 16 12 N -0.60 -19.78 3.31 -815.89 -2.70 -22.49 16 13 C 0.09 3.22 4.41 86.73 0.38 3.60 16 14 C 0.17 6.64 2.85 46.18 0.13 6.77 16 15 H 0.07 2.64 8.02 -2.39 -0.02 2.62 16 16 N -0.72 -35.44 5.08 -317.34 -1.61 -37.05 16 17 C -0.24 -13.30 9.98 84.03 0.84 -12.46 16 18 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 20 N -0.96 -59.39 13.06 21.65 0.28 -59.11 16 21 Si 0.96 47.84 29.55 68.60 2.03 49.86 16 22 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 23 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 24 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 25 C -0.08 -2.39 0.87 -50.71 -0.04 -2.43 16 26 C -0.13 -4.15 7.94 71.98 0.57 -3.58 16 27 C -0.12 -3.29 8.68 71.98 0.62 -2.66 16 28 C 0.13 3.59 5.83 86.93 0.51 4.10 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.58 6.46 -2.38 -0.02 1.56 16 31 H 0.13 0.50 8.11 -2.38 -0.02 0.48 16 32 H 0.24 0.54 7.44 -2.91 -0.02 0.52 16 33 H 0.41 5.51 8.93 -92.71 -0.83 4.69 16 34 H 0.42 2.28 7.74 -92.71 -0.72 1.56 16 35 H 0.14 5.64 4.34 -2.91 -0.01 5.62 16 36 H 0.06 2.45 6.64 -2.38 -0.02 2.43 16 37 H 0.06 2.34 7.07 -2.39 -0.02 2.33 16 38 H 0.38 20.03 5.26 -92.71 -0.49 19.54 16 39 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 40 H 0.05 1.87 6.34 -2.39 -0.02 1.86 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.04 1.31 7.91 -2.39 -0.02 1.29 16 43 H 0.07 1.63 8.07 -2.39 -0.02 1.61 16 44 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.09 2.19 7.99 -2.39 -0.02 2.17 16 47 H 0.08 2.29 8.00 -2.39 -0.02 2.27 16 Total: -1.00 -83.97 379.33 1.10 -82.87 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: -1.00 Total: 35.09 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 7.46 Total: 20.21 kcal Atomic # 7 Polarization: -135.37 SS G_CDS: -7.26 Total: -142.63 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -0.14 Total: -45.41 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.86 kcal Total: -83.97 1.10 -82.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996013058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.173 kcal (2) G-P(sol) polarization free energy of solvation -83.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds